NO04G04350, NO04G04350 (gene) Nannochloropsis oceanica

Overview
NameNO04G04350
Unique NameNO04G04350
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1483
Alignment locationchr4:1176964..1178446 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1176964..1178446 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04350 vs. NCBI_GenBank
Match: EWM28816.1 (hypothetical protein Naga_100002g161 [Nannochloropsis gaditana])

HSP 1 Score: 183.7 bits (465), Expect = 3.600e-43
Identity = 100/127 (78.74%), Postives = 114/127 (89.76%), Query Frame = 0 
Query:    1 MARAVLFVALVLAVFAALASAFMTPAPISLRTASQQLTQQKGRVAGNVVMACRFNAKREKRKRNGENARKYRMKNTGPKYLAIKTRKRASKAEYSKRLEQYETDFTAQIYQMQDVDAMLAAATDGTD 128
            M+RA   VAL+LAV   +++AFMTPAP++LRT SQQ+ QQKGR AGNVVMACRFNAKREKRKRNGENARKYRMKNTGPKYL IKTRKRASKAEYSKRLEQYE DFTAQI+Q+QD+D++LA A+DG D
Sbjct:    1 MSRAFFLVALLLAVCVTVSTAFMTPAPLALRTGSQQV-QQKGRAAGNVVMACRFNAKREKRKRNGENARKYRMKNTGPKYLIIKTRKRASKAEYSKRLEQYEMDFTAQIFQVQDIDSLLAGASDGGD 126
The following BLAST results are available for this feature:
BLAST of NO04G04350 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28816.13.600e-4378.74hypothetical protein Naga_100002g161 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009354NSK009354Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04350.1NO04G04350.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668892gene_2222Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g161gene1780Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04350.1NO04G04350.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04350 ID=NO04G04350|Name=NO04G04350|organism=Nannochloropsis oceanica|type=gene|length=1483bp
TGACACTGCCATCTCCCTGCCTGTGTGAAATGTGGCTCGGAAGTGAGAGA
ATGAAAGGAAAGCCAGTCGGCAGAGGCCAGGGACAGGTGCAAGTCAATTA
AGGGAGAAGGCAGCAAATCGACTGAGTCGTAGCGGGGAGGCTCTCCGGAT
CGATATCGTTCGGATAAGTGAAAATCAAAGACCCCAAAAAGCTTGAATGT
CGCACAGCGTAGACACTCGAGAAGGTGATGCCTATACTGTATGAAGGTTC
GTGAGGTGGCGAGGTTTATGTAGCGCATGGCGCATTAGAGAGAGGCCGAG
GGCACGCTCGGTGAGTATCATGTGATTTCGCACAAAGTCCAATAGCGGCT
GAGGCTCTTGCCCACACGCCAACCACGCCCACGCCTAGGGCACGGCAACT
AGAAGATAAAGCCCTCCTCGCACATTATAGCAACTTCCACGTCAAGACCT
TGTAGTGCCCGTATTGCATAGTGTGGCGGGGAGGGATGTACGATGGCCTC
ATGACAATAGATCAGATTGGCTCTCAGCCACACACCCCCACTCCATTGCT
ATCTTCCGTGCCTTGTTGCACCTCTCGCTCATCCATCTTCCCCCTCTCTT
TCCCAAACCTACACCAAACATGCAATACACAGCGCCATGGCACGAGCCGT
TCTCTTCGTAGCCCTTGTCCTGGCTGTCTTTGCCGCCTTGGCTTCGgtac
gttgtctgcgtgaaagggtgggaggcagggggagagggtcatcgctctag
acgaatgagaagcagatcgactgcatctacaacaaagtctgtccacactc
actcctcgtctctccaaaaatctatcttgcacagGCGTTCATGACTCCGG
CGCCGATTTCTCTCCGCACAGgtgggatgggcgggaagatagggggaggg
atgggtaggagagagggagggacaggtggatgacgatggggactgagatg
gacggattgagccaattcttattccctcccttcttttctttttcaaaaca
gCTTCACAGCAATTGACACAACAGAAGGGACGTGTGGCGGGGAACGTGGT
GATGGCTTGCCGGTTCAACGCGAAGCGTGAGAAGAGGAAGCGTAATGGGG
AGAACGCCCGCAAGTATCGTATGAAGgtgaggattttacgaaggaggatc
gggggtgaaggaggatcgtaaagaggaggatgcaggaaagctaaagaggt
tcgatataaatcgtatgagccgacgacatgaatcttcgttcccttaattt
ctctctcatcttccctccctccctcttcctcagAACACCGGACCTAAATA
CCTGGCGATCAAGACACGCAAGCGTGCCTCCAAGGCCGAGTATAGCAAGC
GTCTGGAGCAATATGAAACTGATTTTACGGCACAGATTTATCAGATGCAA
GACGTGGATGCAATGCTGGCGGCCGCGACGGACGGGACAGATGACGCATA
AGCAAGAGAATCGGAGGGAGGGAGAGAGGGAGG
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protein sequence of NO04G04350.1

>NO04G04350.1-protein ID=NO04G04350.1-protein|Name=NO04G04350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MARAVLFVALVLAVFAALASAFMTPAPISLRTASQQLTQQKGRVAGNVVM
ACRFNAKREKRKRNGENARKYRMKNTGPKYLAIKTRKRASKAEYSKRLEQ
YETDFTAQIYQMQDVDAMLAAATDGTDDA*
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Synonyms
Publications