NO04G04330, NO04G04330 (gene) Nannochloropsis oceanica

Overview
NameNO04G04330
Unique NameNO04G04330
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2709
Alignment locationchr4:1169811..1172519 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1169811..1172519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04330 vs. NCBI_GenBank
Match: EWM28784.1 (hypothetical protein Naga_100002g155 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 2.400e-35
Identity = 177/353 (50.14%), Postives = 207/353 (58.64%), Query Frame = 0 
Query:  189 DKQENPFVLVFTKKARALKKKLDRIKGLEEARDAPPKEKGGMKVELDEAQQALVASKDSLQKSLVETEGYKTLMVQVAKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPVGLSSNQITRLLRVVHVYRAYLEMGTAADQLAGVDFFAKTLLGQTCPPEASFDDKMQHAVKWAGLYLEATE---GEEGKKKG-----ELEKMEFMPGMSLRRLEEHLKQLTSRLS-----PXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEMVVPPNEDEMRQHLALQAVLQQR 529
            +K+E+PFVLV TKK RALKKKLDRIK LEEARD   K        L+E Q ALVASK+ LQ+SL ETEG K  +++VA            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                          P+ L   Q+ RL RV+HVYR+ LEM T A+QL G+D FAK LLGQ  P EASFD K++HAVKWAG YL AT    G    + G     E +++EF PGM++  +E HLK L  R S                                            E+V  PN++E+RQHLALQA+LQ+R
Sbjct:  147 EKEESPFVLVLTKKTRALKKKLDRIKALEEARDDQKK-----AAILNEEQMALVASKEGLQRSLHETEGVKAALMEVA------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERQKAAVHVAREEAARASDAAAAATPPLHLIMEQVERLFRVIHVYRSCLEMNTPANQLLGLDVFAKVLLGQASPSEASFDAKLEHAVKWAGHYLIATSLPPGPGATEAGLVVQEEAKRLEFAPGMTVGAMEAHLKHLLGRFSQPKPASVPAFPPSPASGPPVPVQAMAGLSIKEENGSPRRKEASWELVEAPNQEEVRQHLALQAILQKR 482
The following BLAST results are available for this feature:
BLAST of NO04G04330 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28784.12.400e-3550.14hypothetical protein Naga_100002g155 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04330.1NO04G04330.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04330.1NO04G04330.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04330 ID=NO04G04330|Name=NO04G04330|organism=Nannochloropsis oceanica|type=gene|length=2709bp
ATGAGCATAGAGGACCATCCCCTCCACCACCACCAGCAGCAGCAGCACCA
GCAGCAGAAGAAGAAGAAGCATCAGCAGCACCAGCAGCAGCACCTGCAGC
ACCAGCAGCACCAGCAGCACCAGCAGCAGCAGCACCAGCAGCAGCAGCAG
CACCAGCAGCAGCAGCACCAGCAGCAGCAGCACCAGCAGAAGAAGAAGAA
GAAGGCTGCCGTGGATACTGATGGTGCAGCTGGAACGGGTGGTGCCGTGC
CGGCGGGCCTGAAGAAGGGAGGGCAGCAGCAGCAGCAGCAGCAACGACCT
CAAGGCGGCTCCTCTCTTGCCGTAGCTGCTGTCACTCCTGGTGTAGCAGC
TACACCAGCTCCTTCCGCACCTGGTGTCAAGCAGCAGGAGCTGCAGAAAG
CCAAGAAGCAGAAGCCCAAGGCCCAGCAGCAGAAACAGCAGAAGCAAGAG
CAGCAGGCGTACAAGCAGCAACAAGAGGGAGAAGCCCTCGAGGACAGTAC
TGGCAGTGCTGCCACCACTGGTGCTGCTGCGGCGGCGGCAGTGGCAGCGG
CAACTGCCATTCGTGACAAGCAAGAGAACCCCTTCGTTTTGGTGTTCACA
AAGAAGGCTCGGGCCTTGAAAAAGAAACTGGACAGGATTAAGGGCTTGGA
GGAAGCTCGAGATGCCCCCCCGAAGGAGAAGGGTGGGATGAAGGTGGAAT
TGGACGAGGCGCAACAGGCATTGGTGGCGTCGAAGGACTCGTTGCAAAAG
AGCTTGGTGGAGACAGAGGGGTACAAGACTCTGATGGTGCAGGTAGCAAA
GGAGGAAGAGGGCAAGCTTCGCGCTCGGCAGGCAGAGGAAGAGAAGGAAG
CCGCAGCAGAGGTTGCTCGGATGAAAAAGCAACAGCAGCAGGAACGCAAA
CAGCAGCAACAGCAGCAACAGCAGCAACAGCAACAAGAACGGAAGCTCCA
GCTACAGGTACAGCAACAGCAAAAAGAAATCGAGCAACACAAAGCCGCCC
TCGCCACCGCCAAGGCCGACGCCGCCGCTGCGACTGCTACTGCTGCTGCC
GCTACCGCAACCCCTGCTTCTCCAGTGGGCCTGTCCTCTAACCAGATCAC
GCGGTTGTTGCGTGTCGTGCATGTGTACCGGGCGTACCTAGAAATGGGTA
CAGCAGCGGACCAGCTGGCCGGAGTAGATTTTTTCGCCAAGACCTTACTA
GGACAAACGTGCCCGCCCGAGGCATCCTTCGACGATAAAATGCAACACGC
CGTGAAGTGGGCGGGGTTGTACCTCGAGGCAACCGAGGGCGAGGAAGGGA
AGAAGAAAGGGGAATTAGAGAAGATGGAGTTTATGCCTGGCATGAGCCTG
AGGCGTTTGGAGGAACATCTGAAGCAACTTACTAGTCGGCTTTCCCCCCC
CAAGCCCACCCCTCCTCCCTCCCTCCCTCCTCCTGCTCCTACACCACTGC
GGACGTTGGAGGGGGAGAAAGAGGGCACAGCAGCAGCAGCAGCAGCAGCA
GCAGCGTCGTGGGAGATGGTAGTCCCCCCGAACGAAGACGAGATGAGGCA
GCACCTGGCTTTGCAAGCCGTTCTGCAGCAGCGACACGGCCTCCAGCAGC
ACCAGCACCAGCACCAGCAGCAGCCGCAACGAGGGCAAGAGCTGAGCAGC
CGCGATGAGATTCACCCTGTGGCTTCTTTCGGCCTTTCTCCGCAGCAGCA
GCAGCAGCAGAATGGGAAGCTTGGTGAGGCCTACCCCATCAAAGAGAGCA
GCAGCAGTAGCAGTAGCAACGACAAAAACAAAAACAAAAGCACGAAGTCC
CGTGGTCCCCCTTCCCAGCGCCACGCCCCGTCTACCCCAGGTGCTACCGC
TGCTGCTGCTGCTACTGTAGCGGCGGCTCCTCCAGGATTAAGCTTCACTG
CAGCCGTGAGTCAGGGGATGGGAAGCAAGCAGGAAGGGACAGGCCTATAC
CCGAAGACCGCTGCGGGGACTGGCCCGGAGACTGGCAACAAGGGGGTTGC
TACTTCCAGAGAAGGTGGAGGAGTATGGCGGAATAATCGACGTGGTGGTG
GTGGAGAGCAGCAGCAGCAGCAGCAACGCAATGGGCGAGGGAACCGTCGA
GGTGGTGGTAGCGGTGGTGGTGGGGGAGGAGGAGGAGGAGGTGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCAGGGTATAGC
GGTGGCCCTGGTGCAGGAGGGGGGGACCTTTTCCCGTCATCCTCCTCCCT
CTGTTTCGCATGGGACAAGCGCCGCCGTTGGTAGTCACTAGGGAAGGGAG
AGAGGGAGCAAGGGAGGGATAGACAGAAGTGAAACAATACAATAGTGTGC
AAAAGCAGCAACAAGAACCAATAAAAGGAGCAGCAGTAGAAGCAGTAGCA
GTAGTAGTAGCAGCAGCAGCACTAAGAGCAGTAGTAATATAATTCAGATC
AGATATGTCAAACTTATACGTTTAAGGGGGGGGGGGAAGGAGGGAGGACG
ACCGGTCGAGCAAGGATAGCGTTCCGTTGGCAAAGCGAGGAAGATGCGCA
CAACGCAGCGGATCTTCCAGAGCAATAAGAGTGACGGTATAAAAAAAAGG
AGAGAAGGAAGGAGGTAAGGTGGGGGCGAGTCTCTTTGTTGTTGGAATCA
CCCAAGGAGTACACCGCCATTTACAACACAAGAATAAAAAGAATGACAAG
AAAGACACT
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protein sequence of NO04G04330.1

>NO04G04330.1-protein ID=NO04G04330.1-protein|Name=NO04G04330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp
MSIEDHPLHHHQQQQHQQQKKKKHQQHQQQHLQHQQHQQHQQQQHQQQQQ
HQQQQHQQQQHQQKKKKKAAVDTDGAAGTGGAVPAGLKKGGQQQQQQQRP
QGGSSLAVAAVTPGVAATPAPSAPGVKQQELQKAKKQKPKAQQQKQQKQE
QQAYKQQQEGEALEDSTGSAATTGAAAAAAVAAATAIRDKQENPFVLVFT
KKARALKKKLDRIKGLEEARDAPPKEKGGMKVELDEAQQALVASKDSLQK
SLVETEGYKTLMVQVAKEEEGKLRARQAEEEKEAAAEVARMKKQQQQERK
QQQQQQQQQQQQERKLQLQVQQQQKEIEQHKAALATAKADAAAATATAAA
ATATPASPVGLSSNQITRLLRVVHVYRAYLEMGTAADQLAGVDFFAKTLL
GQTCPPEASFDDKMQHAVKWAGLYLEATEGEEGKKKGELEKMEFMPGMSL
RRLEEHLKQLTSRLSPPKPTPPPSLPPPAPTPLRTLEGEKEGTAAAAAAA
AASWEMVVPPNEDEMRQHLALQAVLQQRHGLQQHQHQHQQQPQRGQELSS
RDEIHPVASFGLSPQQQQQQNGKLGEAYPIKESSSSSSSNDKNKNKSTKS
RGPPSQRHAPSTPGATAAAAATVAAAPPGLSFTAAVSQGMGSKQEGTGLY
PKTAAGTGPETGNKGVATSREGGGVWRNNRRGGGGEQQQQQQRNGRGNRR
GGGSGGGGGGGGGGGGGGGGGGGGGGGGGGRV*
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Synonyms
Publications