NO04G04290, NO04G04290 (gene) Nannochloropsis oceanica

Overview
NameNO04G04290
Unique NameNO04G04290
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2029
Alignment locationchr4:1159893..1161921 +

Link to JBrowse

Properties
Property NameValue
DescriptionCellulase 2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1159893..1161921 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798hydrolase activity, acting on glycosyl bonds
GO:0016787hydrolase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0008152metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR017853Glycoside_hydrolase_SF
IPR001547Glyco_hydro_5
Homology
BLAST of NO04G04290 vs. NCBI_GenBank
Match: EWM26490.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 345.5 bits (885), Expect = 3.200e-91
Identity = 173/390 (44.36%), Postives = 232/390 (59.49%), Query Frame = 0
Query:  145 WESVQGEVRFNGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGV-----------SNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDG-EKFVYKPGAYANRECDPRWRL 523
            W S  GE+  NG P+H+KGV++FGFET   V HGL   T      FLR E FN +RLP S A AL  +   + +  +   L   T  +L+  +I +A   GI+++LDMHR  E+   ELWY  +YS D + + W+ LL+AF  RWN+  +DL NEPHG A W SG    DWN AAE +   L + HP+Y GL FVEG             NN     +WG +LEGV   P+D+  +      N+R+VYSPH YGP    QPYF+A ++P N+P IW   + F+E+ T  AVV+GEWGG Y NQ K++ D FA +L++ C+ D  +W LNPNS DTGGLLD D+ TP   +L +L  VQP P+ +   G +++   PGAYAN +CD   RL
Sbjct:   71 WTSEGGEILLNGQPFHLKGVSYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSTALALEPNKKVNANTIEKE-LHDLTALELIGNIIDKAAEYGILIMLDMHRLNEDFIPELWYDDKYSMDDVKEAWDNLLTAFGDRWNLFAIDLKNEPHGVATWGSGKATTDWNTAAEELATYLYKKHPQYKGLVFVEGTQLASAKHHKLDKNNK----WWGGDLEGVQEFPIDLGSDAL----NKRLVYSPHVYGPDAFVQPYFEAKNFPDNMPDIWKKQWAFVEEQTDRAVVVGEWGGRYENQDKIWQDSFAKFLVDECLEDTFYWCLNPNSGDTGGLLDYDFLTPMPKKLALLAKVQPHPTFITVKGSDQYCISPGAYANPKCDKGRRL 451          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: EWM20925.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 310.1 bits (793), Expect = 1.500e-80
Identity = 156/359 (43.45%), Postives = 209/359 (58.22%), Query Frame = 0
Query:  145 WESVQGEVRFNGLPYHIKGVNWFGFETDTRVFHGL---DVHTLGFYLDFLRAEDFNLLRLPISLAAALNLD-SYPSYHYFQ-DPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKF-ELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRL 498
            W S +  V  N   + IKG+NWFGFET  +  HGL      TL  YLD L    FN +RLP S+  AL LD +YP   + Q D  L   T  Q+++ ++ EAG RG+MV+LD HR   +    +LWY + Y   ++L  W+ +L+ FK  WN+  +DL NEPHG   W SG+   DW  A+E +   +  AHP++ GLFFV G+     +  +WG N   V   P+DV   G     NRRVVY+PH YGP V  Q YF +  +P NLP +WD  +GFL      AVV+ EWGGF   +   + +  A YL E+ M+DN +W LNPNS DTGG+L +DW+T    +LK+L+ VQP PSRL
Sbjct:   18 WTSERRMVLVNNRQFRIKGINWFGFETPDKCVHGLWGGLSKTLTDYLDLLAFHGFNAIRLPFSVKLALALDTTYPEPGFVQADASLSSLTSGQIMDKLVEEAGKRGMMVMLDQHRLDPDRGISDLWYDEGYEEPVILRSWDIMLARFKTHWNVFALDLKNEPHGPCSWGSGEALTDWKAASERIIRHIAAAHPDFRGLFFVSGIWGGGGH--WWGGNFRRVREHPVDVGSTGL----NRRVVYTPHVYGPDVFPQSYFSSWSFPDNLPAVWDLHWGFLSGVLETAVVVSEWGGFCRGKDAKWQERIARYLREKGMADNFYWCLNPNSGDTGGILLDDWSTMHEQKLKLLRDVQPEPSRL 370          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: EWM26893.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 304.3 bits (778), Expect = 8.100e-79
Identity = 158/380 (41.58%), Postives = 218/380 (57.37%), Query Frame = 0
Query:  145 WESVQGEVRFNGLPYHIKGVNWFGFET-DTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDA-PDYPRNLPKIWDALFGFLEQATGNAVVIGEWGG---FYHN-QTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANRECDP 519
            W     E+R NG  +H+KG++WFG E  D+ +  GL+   L   L FL   +FN +R+P S   AL+ D+     YF+D  +   + RQ L   I  A    I+V+LD HR  + E  ELWY++EY+ + +L  W+ LL   KH WN+  +DL NEPHGAA W SG+   DWN AAE +   L+  HPE+ GL FVEG+         +    E +   P+D    GK P  N R+VYSPH YGPSV    +F    ++P +    W+  +GF+E+ TG+A V+GEWGG    YHN +  ++ D FA YL+E+CMSD   W LNP S DTGG+L  +W      +L +   VQP PS L+ +G+ F  +PG YAN +CDP
Sbjct:   69 WTGTNKELRVNGKTFHLKGLSWFGLEVGDSNMLLGLNNRGLDEILQFLVDNNFNAIRVPFSTKWALDYDT-GVRGYFRDGDINQLSRRQFLNKFIERAADFKILVMLDSHRLNDQEIPELWYSQEYTQEDMLAAWDILLGDLKHHWNLFAIDLKNEPHGAATWGSGNAATDWNTAAEKIGKHLLTKHPEFKGLVFVEGLG--------YSIEFEKIKTHPIDF---GK-PEFNERLVYSPHQYGPSVTGDLHFAGYVNFPASQLSEWERCWGFIEEKTGHACVLGEWGGKYDSYHNDKDMVWQDRFAKYLVEKCMSDQFVWDLNPESGDTGGVLKANWWDAEEKKLALYDTVQPHPSWLWKEGDTFYLEPGEYANPKCDP 435          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: EWM23139.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 284.6 bits (727), Expect = 6.600e-73
Identity = 152/385 (39.48%), Postives = 214/385 (55.58%), Query Frame = 0
Query:  143 PLWESVQGEVRFNGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLA-AALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMH-RARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSN---NYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSV-DQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDE--FALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRL---FFDGEKFVYKPGAYANREC 517
            P + S  G V  NG P ++KG+NW+GFE +  V  GL V +   ++ FL +  FN LRLP SL   A  LDS  +  Y     +RG T  Q+++ +   A A+GI+++LD+H  + E    +LWY +     ++LD W  LL  F  RWN++G+DL NEPHG A W  G P  DWN  A     TL    P++ G+FFVEG+     N P+  +WG NLEGV + P+         + +RRVVYSPH YGP V  +  YF    +P N+P IWD  FG++E++TG AVV+GEWGG      K   ++   A +L+  C+ DN +W LNP +   GGLL  D+    ++ L++L  VQP P+        G+      GA+AN  C
Sbjct:  175 PKYTSENGSVMLNGNPLYLKGLNWYGFEGELFVLDGLAVWSPERFMSFLASHRFNALRLPFSLEWLARGLDSPLANIYVVQEDMRGLTQGQVMDRIFDAAAAQGILILLDLHVISVEKGITDLWYDETADGALVLDLWTLLLRRFAGRWNLLGIDLKNEPHGIASWGHGHPKTDWNAFATKSIQTLATRVPDFHGVFFVEGIERPRWNSPHAYWWGGNLEGVRKYPISTGSE----DLDRRVVYSPHIYGPEVFPRHRYFQDSRFPDNMPGIWDHQFGWIEKSTGRAVVLGEWGGSIVGDRKAAANQQKLAEWLVHACIPDNFWWCLNPATEFNGGLLARDYQAVDKNVLQMLHYVQPKPTTFHGGIGAGDPLCVVDGAFANVRC 555          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: AFA52581.1 (putative endogluconase [Vaucheria litorea])

HSP 1 Score: 282.3 bits (721), Expect = 3.300e-72
Identity = 145/393 (36.90%), Postives = 216/393 (54.96%), Query Frame = 0
Query:  144 LWESVQGEVRFNGLPYHIKGVNWFGFETDTRVFHGL--DVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVS---NNYPY-------ICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRR-----HRLKVLQIVQPSPSRLF---FDGEKFVYKPGAYANREC 517
            +W   QG +  NG+P+ +KG NWFGF T   + HGL  DV T+   LDFL A DFN LR+P+SL+ A  LD+      +Q            +E ++ +A  RG++V+ D H+  + E  ELWY+  Y  +  ++GW  ++  F    N MG+DL NEPH +A W  G    DWN+ AE +   +++  P Y  L FVEG+S   ++ PY         FWG+N  G+     D   +   P  N+ +VYSPH YGP +    YF+A D+P N+P+IW+   GF+E  TG AV+IGEWGG    +  +  +++  Y+L+ C+S + +W + PNS D GGLL   W  P+       +L ++   QP+PS LF     G+++    GA+A+  C
Sbjct:   43 VWSVFQGNILLNGVPFRLKGANWFGFNTSLNILHGLWGDV-TMDEVLDFLAANDFNGLRIPLSLSLA--LDNQTKISQYQCVECTSDLSWDAIERLMDKAAERGLLVLFDFHKLADGESTELWYSDNYPEEKFIEGWVNIIEKFGSWPNFMGIDLFNEPHISATWGKG-LETDWNKGAERIVQGIVEQIPTYNKLIFVEGISSGGSSTPYDEDDPANDQFWGSNFFGL----YDAEVDFGTPELNKLLVYSPHIYGPDLYDHDYFNASDFPDNMPEIWEKQIGFIESLTGKAVIIGEWGGKMEGKDAILQEKWVQYMLDACISGSFYWSVTPNSGDLGGLLTESWDIPQSGDTQFFKLTLIAEAQPTPS-LFTQPISGDQYCLDFGAFADNSC 426          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: PDM84795.1 (hypothetical protein PRIPAC_33818 [Pristionchus pacificus])

HSP 1 Score: 278.9 bits (712), Expect = 3.600e-71
Identity = 140/369 (37.94%), Postives = 208/369 (56.37%), Query Frame = 0
Query:  158 PYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKF-ELWYTKEYSYDMLLDGWNYLLSAFKHR-------WNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYH--NQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANREC 517
            P+ +KG+N+FGFE++T   HG+  + L FYLDF++  +FN +R+P SL    N  S  + +   +P L GKT  QLL+  I  A  RG++++LD HR        ELWY  EY    ++  W  L++ +  R       WN+  +DL NEPH +A W + +   DWN+AAE +  +L      + GLFFVEG+         WG  LE VA+ P++  GN      N RV+YSPH YGPSV  +P F+  D+P NL  I+ A +GF+   TG+ VV+GEWGG     ++   +   +  +L  +C+++N +W LNPNSADTGGLL++DW TP   ++ +    QP+P++      +     GA+    C
Sbjct:   22 PFVLKGINYFGFESETYTPHGIWSYDLNFYLDFIKNNNFNAIRVPFSLEMVKNNPSNLNINCGSNPGLCGKTALQLLDAFIDRAAERGLLIMLDNHRITPGGGISELWYNNEYPESQVISLWQSLITRYSDRQVQLKWIWNVFAIDLKNEPHDSASWGNSNAATDWNKAAERIINSL----SSFPGLFFVEGIE--------WGNRLENVAQFPINT-GNASL---NNRVIYSPHCYGPSVYDRPEFNTQDFPNNLDGIYMAKYGFIVNQTGHPVVVGEWGGRAEVGSRDMAWNQWYVEWLRSKCITNNFYWCLNPNSADTGGLLEDDWLTPTPRKINLTNRAQPNPTKFQPQNGQICITAGAFPEAHC 374          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: ADV58314.1 (cellulase 2, partial [Pristionchus pacificus] >ADV58323.1 cellulase 2, partial [Pristionchus pacificus] >ADV58325.1 cellulase 2, partial [Pristionchus pacificus] >ADV58327.1 cellulase 2, partial [Pristionchus pacificus] >ADV58331.1 cellulase 2, partial [Pristionchus pacificus] >ADV58334.1 cellulase 2, partial [Pristionchus pacificus])

HSP 1 Score: 278.5 bits (711), Expect = 4.800e-71
Identity = 144/365 (39.45%), Postives = 206/365 (56.44%), Query Frame = 0
Query:  155 NGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKF-ELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTK--LFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANREC 517
            NG P  +KG+N+FGFET+T   HG+  + L FYLDF++  +FN +R+P SL    N  S  + +   +P L GKT  QLL++ I  A  RG++++LD HR        ELWY  EY         +   +    RWN+  +DL NEPH +A W + +   DWN+AAE +  +L      + GLFFVEG+         WG  LE VA+ P++  GN   P+ N RVVYSPH YGPSV  +P F+ PD+P NL  I+   +GF+   TG  VV+GEWGG     +K   +   +  +L  +C+++N +W LNPNSADTGGLL++DW TP   ++ +    QP+P++      +     GA+    C
Sbjct:    4 NGQPLVLKGINYFGFETETYTPHGIWSYDLNFYLDFIKNNNFNAIRVPFSLEMVKNNPSNLNINCATNPGLCGKTALQLLDVFIDRAAERGLLIMLDNHRITPGGGISELWYNNEYPE-------SQKFTKTHCRWNVFAIDLKNEPHDSASWGNSNAATDWNKAAERIINSL----SSFLGLFFVEGIE--------WGNRLENVAQFPINT-GN---PSVNNRVVYSPHCYGPSVYDRPEFNTPDFPNNLDGIYMVKYGFIVNQTGQPVVVGEWGGRAEVGSKDMTWNQWYVEWLRSKCITNNFYWCLNPNSADTGGLLEDDWLTPIPRKINLTNRAQPNPTKFQAQNGQICITAGAFPEAHC 345          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: ADV58320.1 (cellulase 2, partial [Pristionchus pacificus])

HSP 1 Score: 278.1 bits (710), Expect = 6.200e-71
Identity = 144/365 (39.45%), Postives = 205/365 (56.16%), Query Frame = 0
Query:  155 NGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKF-ELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTK--LFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANREC 517
            NG P  +KG+N+FGFET+T   HG+  + L FYLDF++  +FN +R+P SL    N  S  + +   +P L GKT  QLL++ I  A  RG++++LD HR        ELWY  EY         +   +    RWN+  +DL NEPH +A W + +   DWN+AAE +  +L      + GLFFVEG+         WG  LE VA+ P++  GN   P+ N RVVYSPH YGPSV  +P F+ PD+P NL  I+   +GF+   TG  VV+GEWGG     +K   +   +  +L  +C+++N +W LNPNSADTGGLL+ DW TP   ++ +    QP+P++      +     GA+    C
Sbjct:    4 NGQPLVLKGINYFGFETETYTPHGIWSYDLNFYLDFIKNNNFNAIRVPFSLEMVKNNPSNLNINCATNPGLCGKTALQLLDVFIDRAAERGLLIMLDNHRITPGGGISELWYNNEYPE-------SQKFTKTHCRWNVFAIDLKNEPHDSASWGNSNAATDWNKAAERIINSL----SSFLGLFFVEGIE--------WGNRLENVAQFPINT-GN---PSVNNRVVYSPHCYGPSVYDRPEFNTPDFPNNLDGIYMVKYGFIVNLTGQPVVVGEWGGRAEVGSKDMTWNQWYVEWLRSKCITNNFYWCLNPNSADTGGLLEGDWLTPIPRKINLTNRAQPNPTKFQAQNGQICITAGAFPEAHC 345          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: ADV58317.1 (cellulase 2, partial [Pristionchus pacificus] >ADV58318.1 cellulase 2, partial [Pristionchus pacificus] >ADV58332.1 cellulase 2, partial [Pristionchus pacificus])

HSP 1 Score: 277.7 bits (709), Expect = 8.100e-71
Identity = 143/365 (39.18%), Postives = 206/365 (56.44%), Query Frame = 0
Query:  155 NGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKF-ELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYH--NQTKLFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANREC 517
            NG P  +KG+N+FGFET+T   HG+  + L FYLDF++  +FN +R+P SL    N  S  + +   +P L GKT  QLL++ I  A  RG++++LD HR        ELWY  EY         +   +    RWN+  +DL NEPH +A W + +   DWN+AAE +  +L      + GLFFVEG+         WG  LE VA+ P++  GN   P+ N RVVYSPH YGPSV  +P F+ PD+P NL  I+   +GF+   TG  VV+GEWGG     ++   +   +  +L  +C+++N +W LNPNSADTGGLL++DW TP   ++ +    QP+P++      +     GA+    C
Sbjct:    4 NGQPLVLKGINYFGFETETYTPHGIWSYDLNFYLDFIKNNNFNAIRVPFSLEMVKNNPSNLNINCATNPGLCGKTALQLLDVFIDRAAERGLLIMLDNHRITPGGGISELWYNNEYPE-------SQKFTKTHCRWNVFAIDLKNEPHDSASWGNSNAATDWNKAAERIINSL----SSFLGLFFVEGIE--------WGNRLENVAQFPINT-GN---PSLNNRVVYSPHCYGPSVYDRPEFNTPDFPNNLDGIYMVKYGFIVNQTGQPVVVGEWGGRAEVGSRDMTWNQWYVEWLRSKCITNNFYWCLNPNSADTGGLLEDDWLTPIPRKINLTNRAQPNPTKFQAQNGQICITAGAFPEAHC 345          
BLAST of NO04G04290 vs. NCBI_GenBank
Match: ADV58321.1 (cellulase 2, partial [Pristionchus pacificus] >ADV58326.1 cellulase 2, partial [Pristionchus pacificus] >ADV58330.1 cellulase 2, partial [Pristionchus pacificus])

HSP 1 Score: 277.7 bits (709), Expect = 8.100e-71
Identity = 143/365 (39.18%), Postives = 207/365 (56.71%), Query Frame = 0
Query:  155 NGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLRLPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVILDMHRARENEKF-ELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEPHGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYICFWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPDYPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTK--LFIDEFALYLLERCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFDGEKFVYKPGAYANREC 517
            NG P  +KG+N+FGFET+T   HG+  + L FYLDF++  +FN +R+P SL    N  S  + +   +P L GKT  QLL++ I  A  RG++++LD HR        ELWY  +YS        +   +    RWN+  +DL NEPH +A W + +   DWN+AAE +  +L      + GLFFVEG+         WG  LE VA+ P++  GN   P+ N RVVYSPH YGPSV  +P F+ PD+P N+  I+   +GF+   TG  VV+GEWGG     +K   +   +  +L  +C+++N +W LNPNSADTGGLL++DW TP   ++ +    QP+P++      +     GA+    C
Sbjct:    4 NGQPLVLKGINYFGFETETYTPHGIWSYDLNFYLDFIKNNNFNAIRVPFSLEMVKNNPSNLNINCATNPGLCGKTALQLLDVFIDRAAERGLLIMLDNHRITPGGGISELWYNNDYSE-------SQKFTKTHCRWNVFAIDLKNEPHDSASWGNSNAATDWNKAAERIINSL----SSFLGLFFVEGIE--------WGNRLENVAQFPINT-GN---PSLNNRVVYSPHCYGPSVYDRPEFNTPDFPNNVDGIYMVKYGFIVNQTGQPVVVGEWGGRAEVGSKDMTWNQWYVEWLRSKCITNNFYWCLNPNSADTGGLLEDDWLTPIPRKINLTNRAQPNPTKFQAQNGQICITAGAFPEAHC 345          
The following BLAST results are available for this feature:
BLAST of NO04G04290 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM26490.13.200e-9144.36cellulase 2 [Nannochloropsis gaditana][more]
EWM20925.11.500e-8043.45cellulase 2 [Nannochloropsis gaditana][more]
EWM26893.18.100e-7941.58cellulase 2 [Nannochloropsis gaditana][more]
EWM23139.16.600e-7339.48cellulase 2 [Nannochloropsis gaditana][more]
AFA52581.13.300e-7236.90putative endogluconase [Vaucheria litorea][more]
PDM84795.13.600e-7137.94hypothetical protein PRIPAC_33818 [Pristionchus pa... [more]
ADV58314.14.800e-7139.45cellulase 2, partial [Pristionchus pacificus] >ADV... [more]
ADV58320.16.200e-7139.45cellulase 2, partial [Pristionchus pacificus][more]
ADV58317.18.100e-7139.18cellulase 2, partial [Pristionchus pacificus] >ADV... [more]
ADV58321.18.100e-7139.18cellulase 2, partial [Pristionchus pacificus] >ADV... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04290.1NO04G04290.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|551955gene_2216Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04290.1NO04G04290.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04290 ID=NO04G04290|Name=NO04G04290|organism=Nannochloropsis oceanica|type=gene|length=2029bp
GCCTTCGCCCCAGTACCATTAATGCGCACCATTCTAATTTGCCTTCTCTC
TTGATTTCTCCCTTCTCACCAGGACTCTTTCCCCGACACCAGGCGACGCG
AATTCCCTAGTGTACCAACATCCAAGCCATGGCTGTACGTCTTCTCTACG
CTTCGATCGCGGTCCTTCTATTTGTCCTGCCCATCATCGTCCTGTCCGTC
ACACCTATACGTCTGCTCCGAGGCGTGGCACAAGATCCCGACCTCGGTCT
CCTTGACAAGGACCCTGCCATCGAGGACAACGCATTAAATGAATACATCG
ACGATAATAGTAGCATACAATACTACATCGAGCCGGCTGGGATCCTGCAT
AGCAAAGGTGACACTAGCGGCACCGACGACGACGATCACAATGTCACAGG
CGACCCTCTGCGTCCTCTTGAACGAGCAGAGGTCCAACGCGGTCCTATCA
ACGGTGGTGACGACGATTCCAACGAACTCGTAGAGATCTCCATTCCCGCG
GCCGCTCCTATTGATAAGATGCTTAAAGCTATCAATTTCCGCAGGGATGA
CCTGCCACTGTGGGAATCCGTGCAAGGCGAAGTCCGGTTCAATGGGCTCC
CGTACCACATCAAAGGCGTAAATTGGTTTGGTTTTGAGACGGACACACGC
GTATTTCATGGGCTGGATGTACACACTTTGGGATTTTACTTGGATTTTTT
GAGAGCAGAAGATTTTAATCTGCTGCGTTTGCCCATTTCACTGGCAGCGG
CTCTTAATCTGGATTCGTACCCGAGCTATCACTATTTTCAAGATCCGGTC
TTGCGGGGAAAGACGGTGCGCCAGCTGCTAGAGATCGTGATTCATGAGGC
GGGTGCCCGTGGAATTATGGTGATTTTGGACATGCATCGGGCGCGGGAGA
ACGAAAAGTTTGAGCTTTGGTACACGAAGGAGTACTCCTATGACATGTTG
CTGGACGGGTGGAACTACTTGTTAAGCGCATTTAAACATCGGTGGAACAT
CATGGGCGTGGACCTGCTCAACGAGCCCCATGGTGCGGCAAGGTGGGAAT
CAGGAGACCCAGGCATAGATTGGAACCGCGCAGCAGAGAATATGACTATG
ACTCTGATGCAGGCGCATCCGGAGTACACCGGGCTCTTCTTCGTTGAAGG
AGTTTCGAACAACTACCCATACATTTGCTTCTGGGGTGCCAATCTAGAAG
GCGTGGCTCGGAGGCCTTTGGATGTGCGTGGGAACGGTAAATTTCCCAAT
GGGAACAGGCGCGTCGTATACTCTCCGCATACATACGGGCCGTCGGTGGA
CCAGCAGCCGTATTTTGACGCTCCCGACTATCCGCGCAATCTGCCGAAAA
TTTGGGACGCTTTGTTTGGTTTTTTGGAGCAGGCTACGGGGAATGCTGTG
GTCATAGGCGAGTGGGGTGGCTTTTATCACAACCAAACAAAGCTCTTTAT
CGACGAGTTTGCCCTGTACCTGCTTGAGCGGTGCATGTCGGACAACATTT
TCTGGGTGCTGAATCCGAATgtaagtttctgggcgagggaggtttggtag
gaattatgaacactaagtatttttgtgtgcatttgtcacgcgtatgacaa
cttttgcatgcatgtacagAGCGCTGACACGGGAGGCCTACTCGACAACG
ACTGGACTACGCCTAGGCGCCACCGTCTCAAGGTTTTACAGATCGTGCAG
CCTTCCCCGTCCCGGCTCTTTTTCGATGGCGAAAAGTTTGTTTACAAGCC
AGGGGCTTATGCAAACCGTGAGTGCGACCCACGCTGGAGGCTCTGGCTGG
AGCAGGAGCGGCAACGGTTGCATGAGGGTGGGTATGACGTGGAGTGGGAG
GAGGAAGGATTCACACCACTGGTGCAAAGCATGAGGCACTCACAGGAGCA
GAACATGAGAGAGCAGAAGGCGGATATTGTGAGGGAATGGGCTGCACAAG
AGGACATCTGAGAGATTAATTATCATGCGACACAAAAGATTTAAAATCGA
AGAAGCAAAACTGGTAAAGAAACAAAACG
back to top

protein sequence of NO04G04290.1

>NO04G04290.1-protein ID=NO04G04290.1-protein|Name=NO04G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MAVRLLYASIAVLLFVLPIIVLSVTPIRLLRGVAQDPDLGLLDKDPAIED
NALNEYIDDNSSIQYYIEPAGILHSKGDTSGTDDDDHNVTGDPLRPLERA
EVQRGPINGGDDDSNELVEISIPAAAPIDKMLKAINFRRDDLPLWESVQG
EVRFNGLPYHIKGVNWFGFETDTRVFHGLDVHTLGFYLDFLRAEDFNLLR
LPISLAAALNLDSYPSYHYFQDPVLRGKTVRQLLEIVIHEAGARGIMVIL
DMHRARENEKFELWYTKEYSYDMLLDGWNYLLSAFKHRWNIMGVDLLNEP
HGAARWESGDPGIDWNRAAENMTMTLMQAHPEYTGLFFVEGVSNNYPYIC
FWGANLEGVARRPLDVRGNGKFPNGNRRVVYSPHTYGPSVDQQPYFDAPD
YPRNLPKIWDALFGFLEQATGNAVVIGEWGGFYHNQTKLFIDEFALYLLE
RCMSDNIFWVLNPNSADTGGLLDNDWTTPRRHRLKVLQIVQPSPSRLFFD
GEKFVYKPGAYANRECDPRWRLWLEQERQRLHEGGYDVEWEEEGFTPLVQ
SMRHSQEQNMREQKADIVREWAAQEDI*
back to top
Synonyms
Publications