NO04G04220, NO04G04220 (gene) Nannochloropsis oceanica

Overview
NameNO04G04220
Unique NameNO04G04220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1965
Alignment locationchr4:1148265..1150229 +

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Properties
Property NameValue
DescriptionIron-sulphur cluster biosynthesis family protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1148265..1150229 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO04G04220 vs. NCBI_GenBank
Match: EWM28772.1 (hypothetical protein Naga_100002g154 [Nannochloropsis gaditana])

HSP 1 Score: 420.6 bits (1080), Expect = 8.800e-114
Identity = 314/644 (48.76%), Postives = 376/644 (58.39%), Query Frame = 0
Query:   22 DHFQLDKDGIPNEGVLQAIEALGYTCAVHDVVAHCGLPRDLVEAEMMALLRASSGFFEI-TSASANDEI--MKYXXXXXXXXXXXXXXXXXFAANVFSTDHIRYVFPPGLRSFLRRRFVLIRMREAGAKVWGMAFAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHRHDSGLDALRVFHRPRRXXXXXXXXXXXXXXXXXXXXXXXXXNYNPFLFGLDPQLQAQRLREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTFLEALFSLLFGDGSPGPSQNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVDPEKLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMREGSKRSTLLVPTVVGREGEREGWEEEGEEAAAALLREERG--KGELVVEMTKID------QGGEKVPHMKEEEDGKGGDERFSXXXXXXXXXXXXXXXXXXXXXXXXXGYLIERRYVFSRAPLHLLQLSGALGLINLVGAIWASEQWVQFTEPASTVLYVVGKALLCYAALYLLLPLTRLVIISIWNRGIVRRNAVRKGLWREWKQAQMGEQGEGEGRGGREGVLYAKMEYAYKCRMEVG 655
            D  +LD+DG+PNEGVLQAIE LG+TC+VHDVVA CGLP+DLVEAEM A LR S+GFFE+  S SAND++  +K                  + ANVFSTD++RYV+P GLRS LRRRFVL+R+REAG +V  +AF             XXXXXXXXXXXXXXXXXXX                   XXXXXXXXXXXXXXXXXXXXXXXXXNYNPFLFG DPQ+QAQR RE                                                                       XXXXX    MTF+E++FSLLFGDG PGPSQ+++WQ +AKLIH + G+VLPEE+A  L  VDP  LD SM PVCARFGG+PVRC+DG+  R+CGY+YDFA MR+  + STLL  T +  + E  G   +GE  A ALL  E G   G+ VVEMT++D      + G +    ++E+DG       S                         GYL E RYVFSRAPLHLLQ +GALG INLVGA+W S QW+ F EP ST LY VG+ LL YA LY+ LPL RL  I++WNRGI +RN VRK LW+ WK A  GE             +Y KM+YA++ RME+G
Sbjct:   25 DSHRLDQDGVPNEGVLQAIEYLGHTCSVHDVVARCGLPQDLVEAEMAAFLRVSNGFFEVLASPSANDDVFEVKNSDDQQANAQHLQRRDVEYVANVFSTDNVRYVYPSGLRSLLRRRFVLMRLREAGVRVLHVAF---KVVRISFGILXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYNPFLFGRDPQMQAQRWRE-------------QQTRRRRVLGAMDEEGGRAREAGEGGDPSPGSRRRTASSASLYRLPRAPLEGTEGGGEXXXXXVDVDMTFVESVFSLLFGDGPPGPSQSRQWQTLAKLIHERGGIVLPEEIALWLRGVDPNGLDRSMFPVCARFGGQPVRCIDGETRRDCGYIYDFAGMRDKGRHSTLLSSTALREDVEEGG---KGEMEARALLAPEGGGKGGQAVVEMTRVDMTTDAAEAGIQETLSEDEDDGCSRSTGSS-----------------SSSWWDGEGYLEEGRYVFSRAPLHLLQCAGALGFINLVGAVWVSNQWILFPEPGSTALYAVGRILLWYAVLYVSLPLIRLATIAVWNRGISQRNQVRKALWKAWKAA--GEDSSSS--------VYLKMQYAHRVRMELG 622          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_015147624.1 (hypothetical protein [Oscillatoria acuminata] >AFY80976.1 hypothetical protein Oscil6304_1262 [Oscillatoria acuminata PCC 6304])

HSP 1 Score: 77.0 bits (188), Expect = 2.400e-10
Identity = 43/109 (39.45%), Postives = 63/109 (57.80%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVD---PEKLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMREG-SKRSTLLVP 434
            M FLE++FS LFGDG+P  + + +RWQA+A  I    G V+ E++AP L D+      + +  MLPV  RF GRP    DG++      +Y F  ++    +R+TL VP
Sbjct:  176 MNFLESVFSFLFGDGNPNANLEERRWQAIAATIRNNQGAVVAEQIAPYLDDLGTGYSNEYEDYMLPVLTRFNGRPEVSPDGQI------VYHFPELQTTVQQRNTLAVP 278          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: OJJ26431.1 (hypothetical protein BI308_06135 [Roseofilum reptotaenium AO1-A])

HSP 1 Score: 76.6 bits (187), Expect = 3.100e-10
Identity = 40/97 (41.24%), Postives = 57/97 (58.76%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVD---PEKLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMR 423
            M FLEA+FS LFGDG+P    + +RWQA+A  I +Q GVV+ E++AP L D+      + +  +LP+  RF GRP    +G      G LY F  ++
Sbjct:  172 MNFLEAIFSFLFGDGNPNAHLEQRRWQAIAATIRSQQGVVVAEQIAPYLDDLGKGYDREYENYLLPILVRFNGRPEVTPEG------GILYQFPDLQ 262          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_017288556.1 (hypothetical protein [Leptolyngbya boryana] >BAS56854.1 hypothetical protein LBWT_27810 [Leptolyngbya boryana IAM M-101] >BAS63202.1 hypothetical protein LBDG_27810 [Leptolyngbya boryana dg5] >BAY56959.1 hypothetical protein NIES2135_38210 [Leptolyngbya boryana NIES-2135])

HSP 1 Score: 75.1 bits (183), Expect = 9.000e-10
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDV---DPEKLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMR 423
            + FLE+++S LFGDG+P    +N+RWQA+A  I    G V+ E++AP L D+     ++ +  MLPV ARF GRP    +G+      ++Y F  ++
Sbjct:  164 LNFLESIYSFLFGDGNPNADLENRRWQAIAATIQTHQGAVISEQIAPYLDDLGTQSEQEYEQYMLPVLARFDGRPEVSPEGQ------FIYQFPSLQ 254          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_073070171.1 (hypothetical protein [Phormidesmis priestleyi])

HSP 1 Score: 75.1 bits (183), Expect = 9.000e-10
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVD---PEKLDTSMLPVCARFGGRPVRCVDGKM 409
            + FLEA+FS LFGDG+P    + +RWQA+A +I    G V+ E+VAP L DV     ++ +  MLPV ARF GRP    +G++
Sbjct:  175 INFLEAVFSFLFGDGNPNADLEERRWQAIATVIRNNRGAVIAEQVAPFLDDVGTGYDQEYEQYMLPVLARFNGRPEVSPEGQI 257          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_106253966.1 (hypothetical protein [Phormidesmis priestleyi] >PSB20721.1 hypothetical protein C7B65_07355 [Phormidesmis priestleyi ULC007])

HSP 1 Score: 75.1 bits (183), Expect = 9.000e-10
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVD---PEKLDTSMLPVCARFGGRPVRCVDGKM 409
            + FLEA+FS LFGDG+P    + +RWQA+A +I    G V+ E+VAP L DV     ++ +  MLPV ARF GRP    +G++
Sbjct:  171 INFLEAVFSFLFGDGNPNADLEERRWQAIATVIRNNRGAVIAEQVAPFLDDVGTGYDQEYEQYMLPVLARFNGRPEVSPEGQI 253          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_035992782.1 (hypothetical protein [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-9
Identity = 42/114 (36.84%), Postives = 63/114 (55.26%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVDP---EKLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMREGSKRSTLLVPTVVGRE 440
            M  LEA+FS LFGDG+P     ++RWQ++A++I A  GVV+ E++AP L D+      +L+  M+PV +RF G P     G      G +Y F  ++  ++    L P    RE
Sbjct:  175 MNILEAIFSFLFGDGNPNADLDDRRWQSIAQVIQANGGVVVAEQIAPFLNDLGQGWNRELEDFMVPVLSRFNGVPQVSPQG------GIVYQFPELQITAQERRRLSPPQFLRE 282          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_047155658.1 (hypothetical protein [Trichodesmium erythraeum])

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-9
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVDPE---KLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMREGSKR 428
            M FLEA+FS LFGDG+P  +   QRWQA+A +I    G V+ E++AP L D+  E   + +  +LPV  RF GRP    DG++      +Y F  ++  +K+
Sbjct:  186 MNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKEYAVEYEEYILPVLIRFNGRPEVSPDGQI------VYHFPDLQTTAKQ 281          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_011610477.1 (hypothetical protein [Trichodesmium erythraeum] >ABG50084.1 conserved hypothetical protein [Trichodesmium erythraeum IMS101])

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-9
Identity = 41/102 (40.20%), Postives = 60/102 (58.82%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVDPE---KLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMREGSKR 428
            M FLEA+FS LFGDG+P  +   QRWQA+A +I    G V+ E++AP L D+  E   + +  +LPV  RF GRP    DG++      +Y F  ++  +K+
Sbjct:  186 MNFLEAIFSFLFGDGNPNYNLDEQRWQAIATVIKNNQGAVVAEQIAPYLDDLGKEYAVEYEEYILPVLIRFNGRPEVSPDGQI------VYHFPDLQTTAKQ 281          
BLAST of NO04G04220 vs. NCBI_GenBank
Match: WP_073608356.1 (hypothetical protein [Phormidium tenue] >OKH48429.1 hypothetical protein NIES30_10435 [Phormidium tenue NIES-30])

HSP 1 Score: 74.3 bits (181), Expect = 1.500e-9
Identity = 42/118 (35.59%), Postives = 62/118 (52.54%), Query Frame = 0
Query:  330 MTFLEALFSLLFGDGSPGPS-QNQRWQAVAKLIHAQNGVVLPEEVAPLLTDVD---PEKLDTSMLPVCARFGGRPVRCVDGKMGRNCGYLYDFAHMREGSKRSTLLVPTVVGREGERE 444
            M FLEA+FS LFGDG+P      +RWQ++A++I A  G V+ E++ P L D+       L+  M+PV +RF G P     G      G +Y F  ++  +K    + P    RE  R+
Sbjct:  169 MNFLEAVFSFLFGDGNPNDGLDERRWQSIAQVIQANGGAVVAEQITPFLGDLGKGWASDLEDFMVPVLSRFNGLPQVSPQG------GIVYQFPELQVTAKAQRTINPPPFLRESPRK 280          
The following BLAST results are available for this feature:
BLAST of NO04G04220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28772.18.800e-11448.76hypothetical protein Naga_100002g154 [Nannochlorop... [more]
WP_015147624.12.400e-1039.45hypothetical protein [Oscillatoria acuminata] >AFY... [more]
OJJ26431.13.100e-1041.24hypothetical protein BI308_06135 [Roseofilum repto... [more]
WP_017288556.19.000e-1038.14hypothetical protein [Leptolyngbya boryana] >BAS56... [more]
WP_073070171.19.000e-1045.78hypothetical protein [Phormidesmis priestleyi][more]
WP_106253966.19.000e-1045.78hypothetical protein [Phormidesmis priestleyi] >PS... [more]
WP_035992782.11.200e-936.84hypothetical protein [Leptolyngbya sp. KIOST-1][more]
WP_047155658.11.200e-940.20hypothetical protein [Trichodesmium erythraeum][more]
WP_011610477.11.200e-940.20hypothetical protein [Trichodesmium erythraeum] >A... [more]
WP_073608356.11.500e-935.59hypothetical protein [Phormidium tenue] >OKH48429.... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009361NSK009361Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04220.1NO04G04220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628338gene_2209Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g154gene1787Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04220.1NO04G04220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04220 ID=NO04G04220|Name=NO04G04220|organism=Nannochloropsis oceanica|type=gene|length=1965bp
ATGGCGGCAGCCGCGTTGTCACGCCGACACAAGGCATTTAGCGTGTCAGC
AGCAGCCTCAGCTGACCATTTTCAACTCGACAAGGACGGCATTCCAAACG
AAGGCGTGCTCCAAGCCATCGAGGCCCTGGGCTACACCTGCGCTGTGCAT
GATGTGGTAGCTCACTGTGGCCTGCCGCGGGATCTGGTCGAGGCGGAAAT
GATGGCGTTGTTGCGAGCAAGTAGCGGATTTTTTGAAATCACATCTGCCT
CGGCCAATGACGAGATCATGAAGTACCAACAGCAGAAGCACCACCACCAC
CACCAGCACCAGCACAAGGAAGTGGAGTTTGCTGCCAACGTTTTCTCGAC
GGACCATATCCGCTACGTCTTTCCACCAGGTCTGCGCTCCTTTCTGCGAC
GGCGTTTTGTCTTAATCCGAATGCGTGAAGCCGGGGCAAAGGTTTGGGGA
ATGGCCTTTGCCTTTCTGCGTGTCTCTATCGGAGTATTGTTACTATTATC
ATTGCTGGTGATAGTGATCGTCTTGGTGATAGTCGTGGCACGCAGCAGTG
GGGGAGAGCACCGGCACGATTCAGGATTGGATGCTTTGAGAGTGTTTCAT
CGGCCTCGACGGCATTACGTTGGAGGGGGAGGGCTTGGAGGAGCAGGGAA
TGACTGGCGGGACATGTATTACATGTGGTGGTGGTGGAACTATAACCCAT
TTTTGTTTGGATTGGACCCACAGCTTCAAGCGCAGCGCTTGCGAGAGCAA
CAAGCACGGAGGCGGCGGGCGCTCGATGCACTGGATGAGGAGGAGGGAGG
GATGCCCGAGGTGAGGGGAGGCGGAGGGGGAGGGGGGAGAGATGGAAGAG
TATCTGCCGGGACGCGCAGAATTGCGGGATCGTCCTCCTTCTCTTCTTCA
TATCGTTTGGCAGGGCACGAGGAGCAGGATGGTGGGGAACAGCAGCAGGA
GAGAGGGGAGGAGGAGGCGGAAGAAGTGGAGGAGGACATGACGTTTCTAG
AGGCTCTATTTTCTCTTCTATTTGGTGATGGGAGCCCGGGTCCATCCCAG
AATCAACGGTGGCAGGCCGTGGCTAAGCTAATTCACGCACAAAATGGGGT
TGTCTTACCCGAGGAAGTGGCGCCACTGCTGACGGACGTGGACCCTGAGA
AACTGGATACGAGCATGTTGCCTGTGTGTGCCCGTTTTGGAGGGAGGCCC
GTGCGGTGTGTGGATGGGAAGATGGGGAGGAATTGTGGGTACTTGTATGA
TTTTGCACACATGAGGGAGGGATCGAAAAGAAGCACATTGCTGGTGCCGA
CGGTGGTAGGGAGGGAGGGGGAGAGGGAGGGATGGGAGGAAGAGGGGGAG
GAAGCAGCGGCGGCATTGTTGAGAGAGGAAAGAGGGAAGGGAGAGCTGGT
AGTGGAAATGACAAAAATCGACCAAGGAGGGGAGAAAGTACCACATATGA
AAGAGGAGGAGGATGGAAAGGGGGGCGACGAGCGGTTTTCCTGCTCCTCT
TTCTCCTCATCCTCCTCCTCCCCCTCCTCCTCCTCTACATCATCTTTCTC
CTCGTCCTTAATCCCAGGGTATCTAATCGAGCGGCGATATGTCTTTTCTC
GTGCCCCCCTTCACCTCCTTCAACTCTCGGGTGCCTTAGGACTCATCAAT
CTTGTGGGTGCCATCTGGGCAAGCGAGCAATGGGTTCAATTTACGGAGCC
CGCATCCACTGTTCTGTACGTGGTGGGAAAGGCGTTGTTGTGCTACGCAG
CGCTCTATCTGCTGTTGCCCTTGACAAGACTTGTAATAATCTCCATTTGG
AACCGGGGGATTGTCCGGAGGAATGCGGTGAGGAAGGGACTCTGGAGAGA
GTGGAAGCAGGCGCAGATGGGTGAGCAAGGGGAGGGGGAAGGGAGAGGAG
GGAGAGAGGGCGTATTGTACGCGAAGATGGAGTATGCATACAAGTGTCGG
ATGGAAGTGGGGTGA
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protein sequence of NO04G04220.1

>NO04G04220.1-protein ID=NO04G04220.1-protein|Name=NO04G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=655bp
MAAAALSRRHKAFSVSAAASADHFQLDKDGIPNEGVLQAIEALGYTCAVH
DVVAHCGLPRDLVEAEMMALLRASSGFFEITSASANDEIMKYQQQKHHHH
HQHQHKEVEFAANVFSTDHIRYVFPPGLRSFLRRRFVLIRMREAGAKVWG
MAFAFLRVSIGVLLLLSLLVIVIVLVIVVARSSGGEHRHDSGLDALRVFH
RPRRHYVGGGGLGGAGNDWRDMYYMWWWWNYNPFLFGLDPQLQAQRLREQ
QARRRRALDALDEEEGGMPEVRGGGGGGGRDGRVSAGTRRIAGSSSFSSS
YRLAGHEEQDGGEQQQERGEEEAEEVEEDMTFLEALFSLLFGDGSPGPSQ
NQRWQAVAKLIHAQNGVVLPEEVAPLLTDVDPEKLDTSMLPVCARFGGRP
VRCVDGKMGRNCGYLYDFAHMREGSKRSTLLVPTVVGREGEREGWEEEGE
EAAAALLREERGKGELVVEMTKIDQGGEKVPHMKEEEDGKGGDERFSCSS
FSSSSSSPSSSSTSSFSSSLIPGYLIERRYVFSRAPLHLLQLSGALGLIN
LVGAIWASEQWVQFTEPASTVLYVVGKALLCYAALYLLLPLTRLVIISIW
NRGIVRRNAVRKGLWREWKQAQMGEQGEGEGRGGREGVLYAKMEYAYKCR
MEVG*
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Synonyms
Publications