NO04G04210, NO04G04210 (gene) Nannochloropsis oceanica

Overview
NameNO04G04210
Unique NameNO04G04210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1807
Alignment locationchr4:1146356..1148162 +

Link to JBrowse

Properties
Property NameValue
DescriptionRetinol retinaldehyde reductase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1146356..1148162 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036291NAD(P)-bd_dom_sf
IPR002347Glc/ribitol_DH
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO04G04210 vs. NCBI_GenBank
Match: EWM28666.1 (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 588.6 bits (1516), Expect = 1.400e-164
Identity = 285/361 (78.95%), Postives = 319/361 (88.37%), Query Frame = 0
Query:    1 MGLLNLINNIAHIPVFEDVCYYNFFFWAWFWGPLLGGLVFLHDLTTGFFFSIFXVKXXXXXXXXXTGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAKWGQGSAPVGVS 362
            MGL+N  NN+AHIPVFED+CYYNFFFWAWFWGPLLG LVFLHD TTGFFFSIF V+         TGCDTGFGK+LAL L  KGFKVYA+CL Q++AD LKKEC+AL T+ILDVTKEDQVA V A + AA+PQG+FALVNNAGVSRAGLIDWLN+SD+RFCMEVNYF++VSVTKAFLPSLKKSKGR+IMMSSAAGVACGYPVT AYS+SK A+E+F+SALRQELR WGITVSTINPGFHRTEIN NA+  LK TFEKAP+E+QE+YGE+YL A + A TR+TET ALDPKNVIRAY+HA TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGE+ AYYASTT  MRV+RGA+W QG APVG+S
Sbjct:    1 MGLINWANNVAHIPVFEDMCYYNFFFWAWFWGPLLGALVFLHDATTGFFFSIFYVEPSEDKVVVITGCDTGFGKSLALDLGKKGFKVYASCLTQRSADELKKECDALQTIILDVTKEDQVASVAARISAAHPQGIFALVNNAGVSRAGLIDWLNMSDFRFCMEVNYFSVVSVTKAFLPSLKKSKGRIIMMSSAAGVACGYPVTCAYSSSKHALELFASALRQELRTWGITVSTINPGFHRTEINHNAAGALKATFEKAPREIQEEYGEEYLGATAEATTRFTETQALDPKNVIRAYVHAITSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEICAYYASTTSGMRVVRGARWDQGKAPVGMS 361          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: EWM28695.1 (retinol retinaldehyde reductase [Nannochloropsis gaditana])

HSP 1 Score: 374.4 bits (960), Expect = 4.100e-100
Identity = 185/364 (50.82%), Postives = 248/364 (68.13%), Query Frame = 0
Query:    2 GLLNLINNIAHIPVFEDVCYYNFFFWAWFWGPLLGGLVFLHDLTTGFFFSIFXVKXXXXXXXXXTGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRG------AKWGQGSAPVG 360
            G L   NN+ HI + E+  +Y++F  AW  GP +  L+ ++D  +GF F ++ V+         TGCDTGFG++LA+RL  KGF+VYA CL     + +K EC  + T++LDVT E+QV    A VDA NP+GL+ALVNNAGV+++GLIDW  +SD+RFCMEVN+F +VSVTKAFLP +K+ KGR++++SS AGV+CGYP+++ YSASK AVE+F+S+LRQELR WGI VSTINPGFHRTE+N+ A   L+  + K    +Q QYG+ Y       +  +TE    DP NV+RA  HA T TRP++QYRVG+DAK    + QIFPLRVGE + Y  +T  +MR I G      A+  Q  AP G
Sbjct:    3 GCLEFWNNLCHIDLLEEWIWYSYFTGAWLLGPFMAFLIVVYDFCSGFAFPLWHVEPSRDKAIFITGCDTGFGRSLAVRLAQKGFRVYAACLTANGVEEIKAECSTVETMMLDVTDENQVQEAAARVDAENPEGLYALVNNAGVAKSGLIDWFGLSDFRFCMEVNFFGVVSVTKAFLPLIKRCKGRIVVVSSVAGVSCGYPLSAPYSASKHAVELFASSLRQELRAWGIKVSTINPGFHRTEMNKVAVKGLETCWSKVDPVIQAQYGQSYFEGCRDFVKTHTEDVVFDPINVVRAMEHAVTCTRPRIQYRVGLDAKYGLVWTQIFPLRVGEKLIYALTTNKKMRSIVGLPTAPRAEDAQADAPFG 366          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: EWM25060.1 (serine threonine-protein kinase dclk3 [Nannochloropsis gaditana])

HSP 1 Score: 242.7 bits (618), Expect = 1.900e-60
Identity = 137/341 (40.18%), Postives = 208/341 (61.00%), Query Frame = 0
Query:    3 LLNLINNIAHIPVFEDVCYYNFFFWAWFWGPL--LGGLV-FLHDLTTGFFFSIFXVKXXXXXXXXXTGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECE----ALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHATTSTRPKVQYRVGIDAK-GLFPFLQIFPLRVGEVIAY 336
            +LNL+N+I H+P+ +D+ ++ + F     GPL  LG L+ FL  L +G    +  ++         TGCDTGFG  LA+ L  KG++VYA CL Q     LK +      ++ +V++DVTK+  + RVV ++   +P+ LFA+V NAGV R GL+DW  ++ YR  MEVN FAM++  KA LP LK+SKGR++ ++S AG+  G P  SAY+ASK A E FS++LR EL  WGI V T+NP FHRT I+ NA++ +K  ++    + Q +YG +YL A     +  T+    DP++V+   + ATT+  P+ QY VG DA   L P + +    + +++++
Sbjct: 1210 MLNLMNDIMHLPIVDDIAWHLYHFVRLLLGPLWALGLLISFLVKLLSGAL--VTRLEQPKGRAVLITGCDTGFGYDLAIALVKKGWRVYAGCLTQAAVAELKTKAAGSAGSMVSVLMDVTKQADIDRVVEQIAKESPKQLFAVVCNAGVGRGGLVDWTPLATYRAIMEVNLFAMIATCKACLPLLKESKGRIVNVTSMAGIFLGAPCMSAYAASKHAAEAFSTSLRFELEGWGIRVVTVNPSFHRTRISTNAAETVKQAYDDLDAKTQAEYGLEYLRAVQKLTSDQTD-GCWDPRHVVNTLVRATTAVSPRTQYIVGADATFCLLPLMNLPTPDIEKIVSF 1547          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: KXJ19453.1 (17-beta-hydroxysteroid dehydrogenase type 6 [Exaiptasia pallida])

HSP 1 Score: 191.4 bits (485), Expect = 4.900e-45
Identity = 117/275 (42.55%), Postives = 160/275 (58.18%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKEC-EALHTVILDVTKEDQVARVVAEVDAANP--QGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEI--NRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPK--NVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVI 334
            TGCD GFGK  A+RL   GF V ATCL  ++   LK+E    L T  LDVTK DQV  V  +V A  P  +GL+ +VNNAGV+  GL+DW+++  ++   +VN + M+ VTK FLP +KK+KGR++ ++S  G AC  P   AYS SK A E FS ALR+E+  +G+ VS + PGF +T +    N S+  +  + K  +E QE+YGE++       M          P    VI A  HA TSTRP  +Y +G DA  L+ +L   P  VG+ I
Sbjct:   59 TGCDRGFGKMAAIRLDQLGFHVIATCLTDESQKELKEEASNKLTTFKLDVTKCDQVQDVYHKVTALIPRDKGLWGVVNNAGVATVGLVDWVSLETFKRSADVNLWGMIDVTKTFLPLIKKTKGRIVNVTSXGGRAC-LPNAVAYSVSKFAAEAFSDALRREIADFGVKVSIVEPGFFQTPMVTKANLSNAWRDVWNKLDKEKQEEYGEEFYXIQVENMLVGMVDTCCSPSTYKVIDAIEHAVTSTRPNSRYVIGWDANLLWIWLSRLPASVGDFI 332          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: XP_020917493.1 (17-beta-hydroxysteroid dehydrogenase type 6-like [Exaiptasia pallida])

HSP 1 Score: 191.4 bits (485), Expect = 4.900e-45
Identity = 117/275 (42.55%), Postives = 160/275 (58.18%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKEC-EALHTVILDVTKEDQVARVVAEVDAANP--QGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEI--NRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPK--NVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVI 334
            TGCD GFGK  A+RL   GF V ATCL  ++   LK+E    L T  LDVTK DQV  V  +V A  P  +GL+ +VNNAGV+  GL+DW+++  ++   +VN + M+ VTK FLP +KK+KGR++ ++S  G AC  P   AYS SK A E FS ALR+E+  +G+ VS + PGF +T +    N S+  +  + K  +E QE+YGE++       M          P    VI A  HA TSTRP  +Y +G DA  L+ +L   P  VG+ I
Sbjct:   48 TGCDRGFGKMAAIRLDQLGFHVIATCLTDESQKELKEEASNKLTTFKLDVTKCDQVQDVYHKVTALIPRDKGLWGVVNNAGVATVGLVDWVSLETFKRSADVNLWGMIDVTKTFLPLIKKTKGRIVNVTSXGGRAC-LPNAVAYSVSKFAAEAFSDALRREIADFGVKVSIVEPGFFQTPMVTKANLSNAWRDVWNKLDKEKQEEYGEEFYXIQVENMLVGMVDTCCSPSTYKVIDAIEHAVTSTRPNSRYVIGWDANLLWIWLSRLPASVGDFI 321          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: XP_022787995.1 (retinol dehydrogenase 7-like isoform X1 [Stylophora pistillata] >PFX27243.1 Retinol dehydrogenase 3 [Stylophora pistillata])

HSP 1 Score: 184.9 bits (468), Expect = 4.600e-43
Identity = 113/294 (38.44%), Postives = 163/294 (55.44%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECE----ALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEK----APQEVQEQYGEKYLHAASAAMTRYTETNALDP--KNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGA 350
            TGCD+GFG+  ALRL + GF V+ATCL  +  + L   C     ALH  + D  +  +  + VA+    N +GL+ LVNNAG+++ G I+W  I +++   +VN + ++ VTK FLP +KK +GR+I ++S  G  C  P  SAYS SK  VE FS ALR+EL P G+ VS + PGF +T+I     DNLK  +++        ++E+YGEK+   +   M          P    V+ A +H+ TS  PK +Y VG DAK L+ ++   P  VG+ I        E  V  GA
Sbjct:   68 TGCDSGFGRETALRLDSLGFNVFATCLTSEGQENLTAACSKRLTALHLDVTDSKEIKETYKFVAQYLPEN-RGLWGLVNNAGIAKVGPIEWQTIEEFKQIADVNLWGLIDVTKVFLPLIKKERGRIINLASIGGRTC-LPHASAYSISKFGVEAFSDALRRELGPTGVKVSIVEPGFFQTKITN--PDNLKGQWQELWANLNHSLKEEYGEKFYETSVKNMLTGMVDTCASPYLYKVVDAIVHSLTSRYPKTRYMVGWDAKLLWIWISRLPAGVGDAILNLLGDKAEPIVCTGA 357          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: XP_022787997.1 (retinol dehydrogenase 7-like isoform X2 [Stylophora pistillata])

HSP 1 Score: 184.9 bits (468), Expect = 4.600e-43
Identity = 113/294 (38.44%), Postives = 163/294 (55.44%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECE----ALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDNLKLTFEK----APQEVQEQYGEKYLHAASAAMTRYTETNALDP--KNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGA 350
            TGCD+GFG+  ALRL + GF V+ATCL  +  + L   C     ALH  + D  +  +  + VA+    N +GL+ LVNNAG+++ G I+W  I +++   +VN + ++ VTK FLP +KK +GR+I ++S  G  C  P  SAYS SK  VE FS ALR+EL P G+ VS + PGF +T+I     DNLK  +++        ++E+YGEK+   +   M          P    V+ A +H+ TS  PK +Y VG DAK L+ ++   P  VG+ I        E  V  GA
Sbjct:   43 TGCDSGFGRETALRLDSLGFNVFATCLTSEGQENLTAACSKRLTALHLDVTDSKEIKETYKFVAQYLPEN-RGLWGLVNNAGIAKVGPIEWQTIEEFKQIADVNLWGLIDVTKVFLPLIKKERGRIINLASIGGRTC-LPHASAYSISKFGVEAFSDALRRELGPTGVKVSIVEPGFFQTKITN--PDNLKGQWQELWANLNHSLKEEYGEKFYETSVKNMLTGMVDTCASPYLYKVVDAIVHSLTSRYPKTRYMVGWDAKLLWIWISRLPAGVGDAILNLLGDKAEPIVCTGA 332          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: XP_002605547.1 (retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae] >EEN61557.1 retinol dehydrogenase, retinaldehyde reductase [Branchiostoma floridae])

HSP 1 Score: 179.9 bits (455), Expect = 1.500e-41
Identity = 110/275 (40.00%), Postives = 157/275 (57.09%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKEC-EALHTVILDVTKEDQVA---RVVAEVDAANPQGLFALVNNAGVS--RAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEI--NRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEV 333
            TGCDTGFG  L+ RL   G +V+A CL +     L++ C E L  + +DV+  D V    RVV E  A   +GL+ LVNNAG++    G ++W    DY+  + VN   M+ VTK FLP LKKS+GRV+ ++SA G     P    Y+ SK  VE FS  LR+ +R +G+ V  I PGFHRTEI    NA   L  T+++   E + +YGE++L AA  A+    +    DP  V+ A  HA  +TRP+ +Y +G DA+ +F  +   P  +G++
Sbjct:   40 TGCDTGFGNLLSKRLDQLGLRVFAGCLTEAGVAELRQSCSERLQPIRMDVSSSDSVQDAFRVVKE--AVGSKGLWGLVNNAGIAGVAGGPMEWATKEDYQAVLNVNLLGMIDVTKTFLPLLKKSRGRVVNVASAVG-RMAVPHAGPYTVSKYGVEAFSDCLRRAMRYFGVKVHIIEPGFHRTEITNQENALRLLDHTWQRQSPETKTEYGEEFLQAAKDAVVA-ADRFMQDPVAVVDAMEHALCATRPRSRYVIGWDARIMFVPISWLPTDLGDL 310          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: XP_001627771.1 (predicted protein [Nematostella vectensis] >EDO35671.1 predicted protein [Nematostella vectensis])

HSP 1 Score: 179.9 bits (455), Expect = 1.500e-41
Identity = 111/286 (38.81%), Postives = 168/286 (58.74%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKECEA-LHTVILDVTKEDQVAR----VVAEVDAANPQGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEIN--RNASDNLKLTFEKAPQEVQEQYGEK-YLHAASAAMTRYTETNALDPKNVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEM 344
            TGCDTGFG  LA RL   G +V+A CL++     L++ C A L T+ LDVTK+  + +    +  E+ +++   L+A+VNNAG+   G  DW+ +   +   +VN + +++VTKAFLP LKKS GR++ ++S AG   G P  SAYSASK AV+ FS ALR E+RP+G++V  I+PGF +T +    N    L+  +    Q V+++YGE  YL  A   M  +  +N    + V+ A  HA TS  P V+Y++G D K ++ +L + P  + +V    +   P M
Sbjct:   40 TGCDTGFGHQLAKRLDKLGLRVFAGCLSEGGEKNLQQCCSARLTTIRLDVTKQVDIEKTLCLITQEMASSSGSVLWAIVNNAGIGSGGPFDWITVQQMQRVFDVNVWGLLNVTKAFLPLLKKSCGRIVNVASCAGKLPG-PGLSAYSASKYAVQSFSDALRIEMRPFGVSVHIIDPGFFKTNLTDAHNQKRQLEGLWNGLDQRVKDEYGEDFYLKGAIDFMGWFASSNT---EEVVGAMEHAVTSCFPCVRYKLGWDHKLIWQWLAMLPSEIQDVFLGASFPRPAM 321          
BLAST of NO04G04210 vs. NCBI_GenBank
Match: XP_015776114.1 (PREDICTED: retinol dehydrogenase 3-like isoform X1 [Acropora digitifera])

HSP 1 Score: 179.5 bits (454), Expect = 1.900e-41
Identity = 107/275 (38.91%), Postives = 154/275 (56.00%), Query Frame = 0
Query:   66 TGCDTGFGKTLALRLQNKGFKVYATCLNQQNADALKKEC-EALHTVILDVTKEDQVARVVAEVDAANP--QGLFALVNNAGVSRAGLIDWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGYPVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEI--NRNASDNLKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPK--NVIRAYIHATTSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVI 334
            TGCD+GFGK  AL L   GF V+ATCL ++  + L   C E L T+ LDVT   ++   +  V    P   GL+ L+NNAG++R G ++W ++ DY+   +VN + ++ VTK FLP +KK  GR+I ++S AG A   P  S+YS SK  VE FS ALR+EL+  G+ VS I PGF +T I    N     K  + K    ++E+YG  +   + + M +        P    V+ A +HA  S  PK +Y VG DAK L+ ++   P  VG+ +
Sbjct:   74 TGCDSGFGKVTALELDRLGFNVFATCLTKEGQEELNAVCSERLKTIHLDVTDSQEIRDALGFVMQNLPANTGLWGLINNAGIARIGPVEWQSLEDYKRVADVNLWGLIDVTKVFLPLIKKECGRIINLASIAGRA-SLPHASSYSISKFGVEAFSDALRRELKSRGVKVSVIEPGFFKTNITNKENLQGMWKELWAKLDPNLKEEYGYGFYQTSVSNMLKGMVDTCASPHLCKVVDAIVHALASQNPKSRYVVGWDAKLLWIWISWLPAPVGDAL 347          
The following BLAST results are available for this feature:
BLAST of NO04G04210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28666.11.400e-16478.95retinol retinaldehyde reductase [Nannochloropsis g... [more]
EWM28695.14.100e-10050.82retinol retinaldehyde reductase [Nannochloropsis g... [more]
EWM25060.11.900e-6040.18serine threonine-protein kinase dclk3 [Nannochloro... [more]
KXJ19453.14.900e-4542.5517-beta-hydroxysteroid dehydrogenase type 6 [Exaip... [more]
XP_020917493.14.900e-4542.5517-beta-hydroxysteroid dehydrogenase type 6-like [... [more]
XP_022787995.14.600e-4338.44retinol dehydrogenase 7-like isoform X1 [Stylophor... [more]
XP_022787997.14.600e-4338.44retinol dehydrogenase 7-like isoform X2 [Stylophor... [more]
XP_002605547.11.500e-4140.00retinol dehydrogenase, retinaldehyde reductase [Br... [more]
XP_001627771.11.500e-4138.81predicted protein [Nematostella vectensis] >EDO356... [more]
XP_015776114.11.900e-4138.91PREDICTED: retinol dehydrogenase 3-like isoform X1... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04210.1NO04G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04210.1NO04G04210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04210 ID=NO04G04210|Name=NO04G04210|organism=Nannochloropsis oceanica|type=gene|length=1807bp
AACCACAGCATCCCTTCCCAACCTTTTGCTCGACTAGTTCGGTGTACGCA
CGTCCTTTCGAGGGCCCGTTCTACGTCGCCACCAAGCAGCCACCACAACC
AGACAAGCATGGGATTATTGAACTTGATCAACAATATAGCACATATCCCC
GTGTTTGAAGACGTATGCTACTACAACTTCTTCTTCTGGGCCTGGTTTTG
GGGACCTCTCCTCGGCGGCCTCGTCTTCCTGCACGACCTGACCACGGGCT
TCTTCTTCTCGATATTTTACGTCAAGCCTAGCCTGGACAAGGTGATCTTT
ATCACGGGATGTGACACGGGTTTTGGCAAGACCTTGGCTTTGCGCCTGCA
AAACAAAGGCTTCAAGGTTTACGCCACTTGCTTGAACCAGCAAAACGCGG
ACGCGCTCAAGAAGGAGgtgagcttggaacccgaagtggggggggatcct
tcattctctctcttttatcatattgatagctgacatcttctcaaattcta
ctcttccccgtgtcttcctccccctccctccgctcacgtcgattatcttc
cctctttgatcaaccgctccgtccctccctttccccgtttccacgaaata
gTGCGAAGCCTTGCACACCGTCATCCTGGACGTGACGAAGGAGGATCAAG
TCGCTCGAGTGGTCGCGGAAGTGGACGCTGCTAACCCCCAGGGGCTCTTC
GCCCTTGTCAATAACGCAGGGGTGTCTCGCGCGGGACTGATTGATTGGCT
TAACATCTCCGACTATCGGTTTTGCATGGAAGTGAACTACTTCGCCATGG
TCTCGGTAACAAAAGCCTTCCTCCCTTCCTTGAAGAAGAGCAAGGGTCGG
GTGATCATGATGTCCTCTGCTGCGGGCGTGGCGTGTGGATACCCTGTCAC
TAGTGCTTATTCTGCTTCGAAGCGTGCGGTTGAAATCTTCTCCTCGGCCC
TGCGACAGGAACTCCGACCTTGGGGCATCACTGTCTCTACCATCAACCCC
GGCTTTCACAGAACTGAGATCAATCGCAACGCCTCGGATAACTTGAAACT
GACATTTGAGAAAGCCCCGCAAGAGGTTCAGGAGCAGTACGGAGAGAAGT
ACCTGCATGCCGCCTCCGCTGCGATGACCCGCTATACTGAGACCAATGCC
CTGGACCCCAAGAACGTCATTCGGGCCTACATCCACGCCACCACCTCCAC
CCGACCTAAGGTTCAGTACCGTGTCGGTATTGATGCCAAGGGCCTCTTCC
CGTTCTTGCAGATCTTCCCGTTGCGGGTAGGAGAAGTAATAGCTTATTAC
GCGTCGACGACGCCCGAGATGCGTGTAATTCGTGGAGCGAAATGGGGCCA
GGGCTCGGCACCCGTGGGTGTATCCCCTGCGGTGGCAGCGACTCAAAATG
TTTAGAATGAACTTGAAACCAATTGGCGTGATTATATAGACTGTGAAGGG
GGGGAAATATGGGGGACAATAGGATATGAGGTGGTAAGACCCGTAGAGAA
AAGCACGATTGACGAGATCGCGCTTCTTCCACAAGGAAGTGAAGAACATG
CGAAATCGGAGGTGCAATATACGTAACGTGAAGCGATGGAAAGCAACATA
GAGAAAGTTATGTGTGTGAAAAAGGAAGTAATGGAAAGGAGCAGAATCGA
CACTATCCTAAACAAAAAGATAAGAAACGAAGAGGATGAAAAGCGATCGT
AGGAAAGATGCTGCTGTCAGAGAAATATGTTTGTGTTGGGTCAATTGACA
TTCCGAGAGCCATGTAGGAACTCTTCACTTCAAGGCAAAACGGTATACAC
CCCCGTC
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protein sequence of NO04G04210.1

>NO04G04210.1-protein ID=NO04G04210.1-protein|Name=NO04G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=371bp
MGLLNLINNIAHIPVFEDVCYYNFFFWAWFWGPLLGGLVFLHDLTTGFFF
SIFYVKPSLDKVIFITGCDTGFGKTLALRLQNKGFKVYATCLNQQNADAL
KKECEALHTVILDVTKEDQVARVVAEVDAANPQGLFALVNNAGVSRAGLI
DWLNISDYRFCMEVNYFAMVSVTKAFLPSLKKSKGRVIMMSSAAGVACGY
PVTSAYSASKRAVEIFSSALRQELRPWGITVSTINPGFHRTEINRNASDN
LKLTFEKAPQEVQEQYGEKYLHAASAAMTRYTETNALDPKNVIRAYIHAT
TSTRPKVQYRVGIDAKGLFPFLQIFPLRVGEVIAYYASTTPEMRVIRGAK
WGQGSAPVGVSPAVAATQNV*
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Synonyms
Publications