NO04G04170, NO04G04170 (gene) Nannochloropsis oceanica

Overview
NameNO04G04170
Unique NameNO04G04170
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2344
Alignment locationchr4:1138994..1141337 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1138994..1141337 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G04170 vs. NCBI_GenBank
Match: EWM28749.1 (hypothetical protein Naga_100002g148 [Nannochloropsis gaditana])

HSP 1 Score: 437.6 bits (1124), Expect = 8.200e-119
Identity = 255/487 (52.36%), Postives = 300/487 (61.60%), Query Frame = 0 
Query:  276 LITCSPSLLSLHCCALALAHYIPFSSTSSSSLSSPLALDCVIAALSLLEPIWDVSTTLTELTNGPSFGGGLQGWKKPELLLPPTLTDEGRGVILPLTGGEDRAELFEIARGMWVRFREACRGQ-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIQLLTRIRLAWSTARAAHKEKEAAQRLGRAALALVRSGLKLGEVNGEVLGHLLPFCFALMEEYEKEEAQILGYTIWCFAANKTTGTELAWFLPIQMQVFQRGLKVLVKQPSVLRLLLFCTTELLRLXXXXXXXXXXXXXXXXXXXXXXXWRDVVLEHLLAALARASPISCSNDQSIVFALLEGMYRLLPLYKDGFFIVRYLRALIQVLTFTPLEEGDDAVRVVALRTLLLVLGQCQVVIHQHALETLAQVLRLYILLFRQGNNQTEGDKASMALCREVAGMLRVGCKGQARQGLEAFVQGLREEGGYCLELSGIWP 756
            L+  +P LLSLHCCAL+L            ++SSP +LDCV+AALSLLEP W+V  TL ELT  PS G GLQGW+    LLPP  +      I PLT G D   L ++AR MW +F  ACR Q                                               + QLL R+R AWS ARA H++K A  RLGRA LALVRSGL   EVN +VLGHLLP CFALMEEYE+EE Q+LGY  WCFAA+K+ G  L+ FLPIQ+QVF+RGLKVLVK+  VLRLLLFCTTELLRL                       +RD +L+ LLAAL RASP   S D  I FALLEG++RL+PLY   + +VRYLRAL Q L F PLEEGD AVRV ALRT+LLVL QC V+IHQHA ETLAQVLRLY+LL R+G  QTE D    ++CR+VA +LR  C       LE+F++ LREEGGY  EL  IWP
Sbjct:    2 LVARTPGLLSLHCCALSLQRL---------AVSSPSSLDCVLAALSLLEPSWEVDATLIELTARPSLGCGLQGWRMTPELLPP--SGGCTKWIKPLT-GTDNDPLAQLARDMWAQFHRACRVQVQSIPDPQGAQEEKGSRRLRMAGASEVPLSPPIPKTLTASPLRPAPLLAQLLERMRTAWSKARATHEQKAAGLRLGRAGLALVRSGLGADEVNADVLGHLLPLCFALMEEYEQEELQVLGYVTWCFAAHKSRGPALSSFLPIQVQVFRRGLKVLVKRCVVLRLLLFCTTELLRLNLPSATRGERRDPTRDQRDADGDFRDAILQDLLAALTRASP---SKDPRITFALLEGLHRLVPLYSQDYHLVRYLRALTQALMFVPLEEGDAAVRVAALRTILLVLAQCHVMIHQHAFETLAQVLRLYLLLVRRGEKQTEADHIVSSMCRDVANVLREKCPRHTLVNLESFIKTLREEGGYDTELDSIWP 473
The following BLAST results are available for this feature:
BLAST of NO04G04170 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28749.18.200e-11952.36hypothetical protein Naga_100002g148 [Nannochlorop... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009370NSK009370Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G04170.1NO04G04170.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100002g148gene1792Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G04170.1NO04G04170.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G04170 ID=NO04G04170|Name=NO04G04170|organism=Nannochloropsis oceanica|type=gene|length=2344bp
TCAGGATTATGGAAGACATTCTGATTCACGAGGTGAAACAGGGGTCCCAT
CGCTTTCGGCCGCAACAGCATGACGAGCATGAATGGCTTCCGCCCGAGGC
GTTGCGATTGGAACAAGAAGGGGTGGCCGCGGCCGACGCCGAGGCGTCCT
GGCGGGACTTGCAAGAGAAGCAGAGTCGCAAAGAGAAGGAAAGCCATCCG
AAGATATTGCAGCCACGCTACACGCCGAGATTAGCGGCCTTGGTTTTGGA
GTACACTAACTGGGTAGAGCAAGGAGCGTGGGCGAGTGCGCGGACCTGCT
TGGACCACGCCCTGCCTCCTCCTTGCTCGCCCTCCTCCTCATCATCAAGC
AACAGCGACGAAGATGTCATATACGCTTTGCAAGACATAGGCACTGCGCT
ACTCTCCTCAATCAAGAAGCGCCCTGGGTGGGGCATCACCATCGTCAACG
ACGAATCACAATACCACCACCTAGTTATCAAGGGCCACGGCGGCGCAAGC
GCTGCGCCCTCCGTGCTGAAATCCGAGATTTTGTCGCCGTTGTGCGCAGC
AGTAAGAGAAGCCTTAATAAGAAGAAGAAGAACCATTTCCAATACCATGA
AATTGGAAGGGGAGGGAGGAGCGTTGATCTTAGCTCTGGCGATGGAGGGG
GGAAGACTGGATGGCTCGCAGCAGCAGCAACAGCACCAACAGCCCCACGA
GCAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAC
AACAACAACAACAACAAGATGATGGCGACAAAGATGAGCACAGCGGCAAT
CTCGACGAAGACGTCATTCATGCGGCCCTCGCGCTCATCACCTGTTCTCC
GAGCCTGCTCTCCCTCCATTGTTGCGCGCTGGCCCTGGCCCATTACATTC
CCTTTTCCTCCACGTCCTCCTCGTCCTTGTCCTCCCCTCTAGCGTTGGAC
TGTGTAATCGCCGCATTATCACTGCTTGAACCCATTTGGGATGTCAGTAC
AACACTCACCGAACTTACAAATGGCCCCTCGTTTGGTGGAGGGTTACAAG
GGTGGAAAAAGCCAGAGCTGCTTCTTCCTCCCACACTCACGGACGAGGGA
AGAGGGGTCATCCTGCCTTTGACGGGGGGGGAGGATCGTGCAGAGCTTTT
TGAGATAGCTCGTGGAATGTGGGTGCGTTTCCGTGAAGCCTGTCGTGGTC
AAGAAGAAAGACGGGCTGGCGAGAGGAAAAAGGAGGAGACGACGAAAAAC
AAACAAAAGATAATCTCTCTCTCTCCTTCCTCTCCTCCTCCTCATCCTCC
TCCTCCTCCACCTTCCCATCTCGTCATTCAACTCCTCACCCGAATACGCC
TAGCTTGGTCCACCGCTCGAGCCGCGCATAAAGAGAAGGAAGCAGCCCAG
CGCCTCGGGCGCGCTGCCCTCGCTTTGGTACGAAGCGGGTTAAAATTAGG
AGAGGTGAATGGTGAAGTGCTGGGGCATTTGCTTCCGTTCTGTTTTGCTT
TGATGGAGGAGTATGAAAAGGAAGAAGCACAGATTTTGGGGTATACCATT
TGGTGCTTCGCGGCAAATAAGACGACGGGGACAGAGCTTGCATGGTTCTT
ACCGATACAGATGCAGGTTTTTCAGAGGGGATTAAAGGTCTTGGTGAAAC
AGCCGAGTGTGCTCCGACTGCTTTTGTTTTGTACAACGGAGCTGTTAAGG
TTGACATTGGCGGTACAGCAAGAGCAACAGCGAGAAGAGGGGGGGGGGGG
AGGGGGGAAAGGGGGGGCAGGGTGGCGTGATGTAGTCCTTGAACATTTGC
TTGCAGCGTTGGCCCGCGCGTCCCCAATTAGCTGTAGTAATGACCAGAGT
ATTGTGTTTGCCTTGTTGGAAGGGATGTATCGTCTCCTGCCCCTATACAA
AGACGGTTTCTTCATCGTCCGGTACCTACGGGCATTAATCCAGGTCTTGA
CTTTCACGCCCTTGGAAGAAGGAGATGATGCCGTGCGTGTGGTAGCCCTC
CGCACCCTCCTCCTCGTCCTCGGGCAATGCCAAGTTGTGATCCATCAACA
TGCGCTCGAGACGCTTGCGCAAGTGCTGCGACTGTATATCCTCTTGTTTC
GACAAGGAAATAATCAGACGGAGGGGGACAAGGCAAGCATGGCGTTATGT
CGGGAGGTGGCGGGAATGCTAAGGGTGGGGTGTAAGGGGCAGGCACGACA
AGGGCTCGAGGCCTTTGTCCAGGGACTGAGAGAGGAAGGGGGCTACTGCT
TGGAGCTAAGCGGGATCTGGCCAACTGAAAGTAGAAGTGGAATCGTGAAG
GAATTCCCCGAGAATAAAAAAGATAAATGAAATGAACGTGTACA
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protein sequence of NO04G04170.1

>NO04G04170.1-protein ID=NO04G04170.1-protein|Name=NO04G04170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=774bp
MEDILIHEVKQGSHRFRPQQHDEHEWLPPEALRLEQEGVAAADAEASWRD
LQEKQSRKEKESHPKILQPRYTPRLAALVLEYTNWVEQGAWASARTCLDH
ALPPPCSPSSSSSSNSDEDVIYALQDIGTALLSSIKKRPGWGITIVNDES
QYHHLVIKGHGGASAAPSVLKSEILSPLCAAVREALIRRRRTISNTMKLE
GEGGALILALAMEGGRLDGSQQQQQHQQPHEQQQQQQQQQQQQQQQQQQQ
QQQDDGDKDEHSGNLDEDVIHAALALITCSPSLLSLHCCALALAHYIPFS
STSSSSLSSPLALDCVIAALSLLEPIWDVSTTLTELTNGPSFGGGLQGWK
KPELLLPPTLTDEGRGVILPLTGGEDRAELFEIARGMWVRFREACRGQEE
RRAGERKKEETTKNKQKIISLSPSSPPPHPPPPPPSHLVIQLLTRIRLAW
STARAAHKEKEAAQRLGRAALALVRSGLKLGEVNGEVLGHLLPFCFALME
EYEKEEAQILGYTIWCFAANKTTGTELAWFLPIQMQVFQRGLKVLVKQPS
VLRLLLFCTTELLRLTLAVQQEQQREEGGGGGGKGGAGWRDVVLEHLLAA
LARASPISCSNDQSIVFALLEGMYRLLPLYKDGFFIVRYLRALIQVLTFT
PLEEGDDAVRVVALRTLLLVLGQCQVVIHQHALETLAQVLRLYILLFRQG
NNQTEGDKASMALCREVAGMLRVGCKGQARQGLEAFVQGLREEGGYCLEL
SGIWPTESRSGIVKEFPENKKDK*
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Synonyms
Publications