NO04G03960, NO04G03960 (gene) Nannochloropsis oceanica

Overview
NameNO04G03960
Unique NameNO04G03960
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length581
Alignment locationchr4:1064204..1064784 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1064204..1064784 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G03960 vs. NCBI_GenBank
Match: EWM20376.1 (hypothetical protein Naga_101710g2 [Nannochloropsis gaditana])

HSP 1 Score: 88.6 bits (218), Expect = 8.900e-15
Identity = 40/52 (76.92%), Postives = 46/52 (88.46%), Query Frame = 0 
Query:    9 MAAAKPLSGRSLYILNGADKICYDAFYGTRKPAVMYLPCLFYPKHFCMASSI 61
            MAAAKPLSGRSL+I NGAD ICYD FYGTRKPAV+YLPCLFYPK+   A+++
Sbjct:  124 MAAAKPLSGRSLHIQNGADTICYDIFYGTRKPAVIYLPCLFYPKNNAKATNL 175
The following BLAST results are available for this feature:
BLAST of NO04G03960 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20376.18.900e-1576.92hypothetical protein Naga_101710g2 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL082nonsL082Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03960.1NO04G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|660072gene_2179Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03960.1NO04G03960.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03960 ID=NO04G03960|Name=NO04G03960|organism=Nannochloropsis oceanica|type=gene|length=581bp
ATGACAAGGGAGGAAGTTAAGgtatgagaagtggtggttggtttggatgg
tagcgtcggggctatggaactggggagcgtggagaggggcacatgccagt
ttgctttcgaaagtatctcatttcctccttccctcccttctttccctttc
cccttcatttctctatagATGATGGCCGCTGCCAAGCCACTTTCTGGCCG
GTCCCTATACATCCTAAATGGGGCTGACAAGATCTGCTACGACGCGTTTT
ACGGCACCCGCAAACCTGCCGTGATGTACCTGCCCTGCCTCTTCTATCCC
AAGgtaccagcagtccgcataaagacgggcacgtggggaggaggagagga
ggaggagaaggagacgaaggggggaatggggaggaggaggaagagaaatg
gagctgatgaagtgaggaaggaaggtcgaaagagatgaagaatcctattg
ataagagcacaaaaaaccaaaccaagcctccctccgctggaccattctcc
catccttttccacagCACTTTTGCATGGCGTCATCAATATCTCCTTTTGT
CATTGACATGAAACCCACTTCTACTAGTTAG
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protein sequence of NO04G03960.1

>NO04G03960.1-protein ID=NO04G03960.1-protein|Name=NO04G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MTREEVKMMAAAKPLSGRSLYILNGADKICYDAFYGTRKPAVMYLPCLFY
PKHFCMASSISPFVIDMKPTSTS*
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Synonyms
Publications