NO04G03920, NO04G03920 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03920 vs. NCBI_GenBank
Match: EWM28777.1 (transcription regulator [Nannochloropsis gaditana]) HSP 1 Score: 176.8 bits (447), Expect = 4.800e-41 Identity = 95/136 (69.85%), Postives = 111/136 (81.62%), Query Frame = 0 Query: 11 SVLLLFLACFMALTCQGFL----VASPSSSLISFRRTARTSLTAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143 ++LL FLA A +C GF+ SP+ + I A L A+A+G++AG+VGAVESCR+KI+AAL PVEL+VKSSNDDPNGSHIALRV+SAAFEGKNRVQRQQ+VYKAIWEELSGPIHAVDELVCRTPAEE M Sbjct: 11 TILLAFLA---ASSCHGFIRSFGPCSPTVNAIYPATRAIRPLLASAEGSMAGDVGAVESCRLKIEAALQPVELIVKSSNDDPNGSHIALRVVSAAFEGKNRVQRQQIVYKAIWEELSGPIHAVDELVCRTPAEESM 143
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_002177806.1 (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >EEC50620.1 predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 104.0 bits (258), Expect = 4.000e-19 Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0 Query: 44 ARTSLTAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140 AR + T A + V++C+ KIQ ALS ++ V + DDPNGSHI++ V++ AF GK VQRQQ+VYKAIWEEL GP+HAVD ++C+TP E Sbjct: 18 ARNTATRQFSTANGPDTTIVQTCQQKIQDALSATDVKVTGAYDDPNGSHISIEVVAEAFAGKRPVQRQQMVYKAIWEELKGPVHAVDAMICKTPDE 113
BLAST of NO04G03920 vs. NCBI_GenBank
Match: OEU15575.1 (bola-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 103.6 bits (257), Expect = 5.200e-19 Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 0 Query: 49 TAAADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEE 141 TA + A + VE+C KI AL ++ V + DDPNGSHI++ V+S FEGK +QRQQ+VYKAIWEEL GP+HAVD ++C+TP EE Sbjct: 34 TARFMSSSAPDTSVVETCTQKIGDALETTDVKVTGAYDDPNGSHISIEVVSPLFEGKRAMQRQQLVYKAIWEELKGPVHAVDSMICKTPDEE 125
BLAST of NO04G03920 vs. NCBI_GenBank
Match: GAX12158.1 (hypothetical protein FisN_1Hh083 [Fistulifera solaris]) HSP 1 Score: 103.2 bits (256), Expect = 6.800e-19 Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 0 Query: 55 AVAGEVGA--VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140 +V+GE G V+ C+ KIQ AL + V + DDPNGSHI++ V+S+ F GK VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E Sbjct: 42 SVSGEAGTSIVDICQKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFAGKRAVQRQQLVYKAIWEELQGPVHAVDAMVCKTPDE 128
BLAST of NO04G03920 vs. NCBI_GenBank
Match: GAX21254.1 (hypothetical protein FisN_1Lh083 [Fistulifera solaris]) HSP 1 Score: 102.8 bits (255), Expect = 8.800e-19 Identity = 50/87 (57.47%), Postives = 63/87 (72.41%), Query Frame = 0 Query: 55 AVAGEVGA--VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140 +V+GE G V+ C KIQ AL + V + DDPNGSHI++ V+S+ F GK VQRQQ+VYKAIWEEL GP+HAVD +VC+TP E Sbjct: 42 SVSGEAGTSLVDICHKKIQDALQADSVKVTGAYDDPNGSHISIEVVSSMFVGKRAVQRQQLVYKAIWEELQGPVHAVDSMVCKTPDE 128
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_005841507.1 (hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712] >EKX54527.1 hypothetical protein GUITHDRAFT_100004 [Guillardia theta CCMP2712]) HSP 1 Score: 98.6 bits (244), Expect = 1.700e-17 Identity = 47/92 (51.09%), Postives = 62/92 (67.39%), Query Frame = 0 Query: 51 AADGAVAGEVGAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143 + D + E + + KI + L PV+L V + DPNGSH+ + V+S AFEGK VQRQQ+VYK IWEE+ G IHAVD++ C+TPAE GM Sbjct: 2 STDASAPEEDTVMSTIEKKITSELKPVKLEVIPAYGDPNGSHVTINVVSQAFEGKRAVQRQQMVYKVIWEEMQGAIHAVDQMKCQTPAEAGM 93
BLAST of NO04G03920 vs. NCBI_GenBank
Match: OSX73176.1 (hypothetical protein BU14_0371s0009 [Porphyra umbilicalis]) HSP 1 Score: 95.5 bits (236), Expect = 1.400e-16 Identity = 45/71 (63.38%), Postives = 55/71 (77.46%), Query Frame = 0 Query: 69 KIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140 KI A++P LVV S DPNGSH+ + V+S AFEG N V+R ++VY AIWEELSGPIHAVD+LV +TPAE Sbjct: 71 KITEAINPTSLVVTPSYGDPNGSHVTINVVSEAFEGLNVVKRHKLVYGAIWEELSGPIHAVDQLVTQTPAE 141
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_005708898.1 (hypothetical protein Gasu_04670 [Galdieria sulphuraria] >EME32378.1 hypothetical protein Gasu_04670 [Galdieria sulphuraria]) HSP 1 Score: 87.0 bits (214), Expect = 5.000e-14 Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 0 Query: 63 VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAE 140 VE K++ ALSP L V + DDPNGSH+++RV+S FE ++R Q+VYKAIW+EL GP+HAVD + +TP E Sbjct: 9 VERVEQKLREALSPKFLQVTPAFDDPNGSHVSIRVVSEKFENLTSLKRHQLVYKAIWDELQGPVHAVDSIDAKTPKE 85
BLAST of NO04G03920 vs. NCBI_GenBank
Match: PSC76578.1 (chloroplastic mitochondrial [Micractinium conductrix]) HSP 1 Score: 82.0 bits (201), Expect = 1.600e-12 Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 0 Query: 61 GAVESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEELSGPIHAVDELVCRTPAEEGM 143 G +ES R KIQAAL + V+ D G H+ + V+S FEGK+ V RQ++VYKAIWEEL +HAVD +V RTP E GM Sbjct: 57 GLMESMRGKIQAALDAQMVTVEDMQGD--GRHVEIVVVSKEFEGKSAVNRQRMVYKAIWEELQETVHAVDAMVTRTPEEAGM 136
BLAST of NO04G03920 vs. NCBI_GenBank
Match: XP_005762682.1 (hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516] >EOD10253.1 hypothetical protein EMIHUDRAFT_452727 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 81.6 bits (200), Expect = 2.100e-12 Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0 Query: 63 VESCRIKIQAALSPVELVVKSSNDDPNGSHIALRVISAAFEGKNRVQRQQVVYKAIWEEL---SGPIHAVDELVCRTPAE 140 V+ C ++AAL P + V + DDPNGSHI + +S FEGK + RQQ+V+KAIW E+ G +HAVD +V ++P+E Sbjct: 46 VDRCTAALEAALEPTSVKVMGAYDDPNGSHITIECVSPKFEGKRSLARQQMVFKAIWAEMDGQGGTVHAVDTMVLKSPSE 125 The following BLAST results are available for this feature:
BLAST of NO04G03920 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03920 ID=NO04G03920|Name=NO04G03920|organism=Nannochloropsis oceanica|type=gene|length=658bpback to top protein sequence of NO04G03920.1 >NO04G03920.1-protein ID=NO04G03920.1-protein|Name=NO04G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=143bpback to top Synonyms
Publications
|