NO04G03890, NO04G03890 (gene) Nannochloropsis oceanica

Overview
NameNO04G03890
Unique NameNO04G03890
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1310
Alignment locationchr4:1048693..1050002 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1048693..1050002 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G03890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009407NSK009407Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03890.1NO04G03890.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|295639gene_2171Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03890.1NO04G03890.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03890 ID=NO04G03890|Name=NO04G03890|organism=Nannochloropsis oceanica|type=gene|length=1310bp
ATGGTGAAACATCGTCGCCGCTCCTCCAACTCCTCTTCCTCTTCCTCCTC
CTCCTTCAGACAAAAAAGCTTTCCAATTTTGATGGGTAATCCCAAGATGG
CTTGCACCCTGCTTCGCATGCCCGGGGAAGACATGCCTTTGCCGCCCCAA
GAAGTTCCGAGCTACTTCTACAAAGAAGAAGTGATAATCAAGGACGATGA
GGATGAGCAGAGCGAGAAGGATGAGGGAAAGAAGAGTACCCGCGATGGTA
ACAAACGGCGTTACCGACCTCGGCCCACATACAGGTGGGTTTTGGAAGCG
CTCGAGACGCAACTACATGGAACAAGTAGTGCCATCAAAGCGAAAGATGG
CTCTGCATATTTTATTTTACGTGTAGACGAGCAAACTCGCGACATGTGCC
TGGTGCCCTTGACAGAAGTCATCATGCTCAGGCAGACTGCGCGCGATGGA
GAGGACGAGGAAGAGGGGGAGGAAGGGGGGAAGGGAGAAGAGAGACGCAA
GGCAGCCAAGGAATTCATCGAGCATGGCAATCGATTTGATCAGCGAGCAG
AGGCCTGGGCGAAGAGGTATGGGAGGAGATTGGTGGATGTCTTGAATGTA
GGCGGAGGGGACGATACGGAGGACGAAGACGGGGGCGGGGGAGGTGCGAG
GAAGCGGAGGAGGAAGAGTGGGAGGAAGAGGCCGTGGCAACGCACATATC
GCGTGGATGAGGATGCAGATGCAGGAGAAATGGATCATAATCCCTCGACG
AAGGTGGGAACAAGCTACCAGGACGTGTTTGGGTTGATGGAGGGGGGAGG
GAAGAAGGGAGAGGAGAGGGAGGCGTTAGCGGTTGCATTTGAGACTGTTG
ATACGGGGGGGGATgtccctgatggtgcggacgaaggatttggggcgcct
gaatttggagatgagtactgtcaacccgagcacagGGTGGCGGCGAGGGA
GGTGGAGGAGGGTGGGGAATGGAGGGGGGGGAATGGCCGGGGGAGGAGGC
GTTGTATGAGGAGGAGAGTGGGATTGACGGGTATAGAAGCGAAGAGGAGG
AGGAGGAGCAGGAGGAGGAGAAAGAGGAGAGGGGAAAAGAAATTGATGGA
GGGGGCGCGGAGAGGAAGAGCGGAAAGTTCGCGCAAAAAGGGCCGGCAAC
GTTTGAAGTGCGTTTTGCGGGGTTGATGAAAGGGGAGGAGGAGGAGGATC
AATATTTTGGGGATGATGATGATAGCGACGATGGAAGCGGGAGTGAAGGG
GGAAAAAGGAGGGAATGTAAGGAGGAGGTTGAGGAAGGGGAGAAGAGGAA
GGAGGGATGA
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protein sequence of NO04G03890.1

>NO04G03890.1-protein ID=NO04G03890.1-protein|Name=NO04G03890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=413bp
MVKHRRRSSNSSSSSSSSFRQKSFPILMGNPKMACTLLRMPGEDMPLPPQ
EVPSYFYKEEVIIKDDEDEQSEKDEGKKSTRDGNKRRYRPRPTYRWVLEA
LETQLHGTSSAIKAKDGSAYFILRVDEQTRDMCLVPLTEVIMLRQTARDG
EDEEEGEEGGKGEERRKAAKEFIEHGNRFDQRAEAWAKRYGRRLVDVLNV
GGGDDTEDEDGGGGGARKRRRKSGRKRPWQRTYRVDEDADAGEMDHNPST
KVGTSYQDVFGLMEGGGKKGEEREALAVAFETVDTGGDGGGEGGGGGWGM
EGGEWPGEEALYEEESGIDGYRSEEEEEEQEEEKEERGKEIDGGGAERKS
GKFAQKGPATFEVRFAGLMKGEEEEDQYFGDDDDSDDGSGSEGGKRRECK
EEVEEGEKRKEG*
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Synonyms
Publications