NO04G03820, NO04G03820 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03820 vs. NCBI_GenBank
Match: PNH04580.1 (Translocon-associated protein subunit alpha [Tetrabaena socialis]) HSP 1 Score: 83.2 bits (204), Expect = 1.100e-12 Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 0 Query: 81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213 HPLTN+ P+ ++ T + P + P G P + N P ++ + GSLN F ++ NFT + +V P +E++V+Y F P L P +QVA T+FYE D STTFFNQ++ V+ Sbjct: 31 HPLTNL-PASGEIATGVFFPDYPLS-RHFPAGQPVKVVLGVHNDASEPYNVSAIMGSLNNAQQFGTYYWNFTQQLYFQIVEPSKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--DGFKSTTFFNQTVTVI 158
BLAST of NO04G03820 vs. NCBI_GenBank
Match: KXZ50707.1 (hypothetical protein GPECTOR_15g391 [Gonium pectorale]) HSP 1 Score: 81.3 bits (199), Expect = 4.200e-12 Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = 0 Query: 81 HPLTNMQPS--------HPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213 HPL+N+ PS PD T + V+ +G+ +N P ++ + GSLN A FR ++ NFT + VV PG+E++V+Y F P L P +QVA T+FYE + STTFFNQ++ V+ Sbjct: 31 HPLSNLPPSGEISTGFFFPDFPTRQFI---AGQAVKTVLGI--------RNDASEPYNISAIMGSLNNAADFRAYYWNFTQQVYFQVVAPGKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--EGFKSTTFFNQTVTVL 157
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_002956041.1 (hypothetical protein VOLCADRAFT_109993 [Volvox carteri f. nagariensis] >EFJ43001.1 hypothetical protein VOLCADRAFT_109993 [Volvox carteri f. nagariensis]) HSP 1 Score: 79.7 bits (195), Expect = 1.200e-11 Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 0 Query: 81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213 HPLTN+ P+ ++ T + P + G P + +N+ ++ + GSLN FR ++ NFT + +V P +E++V+Y F P L P +QVA T+FYE D STTFFNQ+I V+ Sbjct: 32 HPLTNLPPA-GEISTGYFFPGYPTR--QFIAGEPVKVVLGVRNEASENYNISMIMGSLNNAQEFRAYYWNFTQQLYFQIVEPSKELSVEYTFLPPKDLPPNDYQVALTVFYEAA--DGFKSTTFFNQTITVL 158
BLAST of NO04G03820 vs. NCBI_GenBank
Match: GAX75809.1 (hypothetical protein CEUSTIGMA_g3252.t1 [Chlamydomonas eustigma]) HSP 1 Score: 77.8 bits (190), Expect = 4.600e-11 Identity = 46/137 (33.58%), Postives = 70/137 (51.09%), Query Frame = 0 Query: 77 GQIFHPLTNMQPSHPDVVTHAYADTKPDNIVR-LPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213 G HPL+ + P D++T + PD+ V+ G P S+ N +T + GSLN P F + QNFT + VV G+E+++ Y F P L P F VA T+FY+ + +S TFFNQ++ ++ Sbjct: 20 GSAPHPLSILPPP-GDIITGYFF---PDHSVKHFAAGKPVSVVLGIHNDASELYNITAIMGSLNTPTDFSIFIQNFTQQIYHQVVLSGQEISIDYTFMPDPRLEPRDFVVALTVFYQ-DKTGQFYSNTFFNQTVEII 151
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_005647802.1 (hypothetical protein COCSUDRAFT_53555 [Coccomyxa subellipsoidea C-169] >EIE23258.1 hypothetical protein COCSUDRAFT_53555 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 76.6 bits (187), Expect = 1.000e-10 Identity = 44/132 (33.33%), Postives = 65/132 (49.24%), Query Frame = 0 Query: 81 HPLTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213 HPLT++ + T + P+ + P G N + +T + GSLN F +QNFT +P + VV PGEE ++ Y F+P P FQVA T+FY F++TFFN++I +V Sbjct: 23 HPLTDIPAPLEGLQTVFWLPEYPEK--QFPAGALVEAVVGVHNNAKERVNVTAIVGSLNNAQAFHQFYQNFTYQPQVAVVSPGEEASLSYYFSPDESFPPREFQVALTVFYNTPAGS--FASTFFNETIDIV 150
BLAST of NO04G03820 vs. NCBI_GenBank
Match: OUS48083.1 (translocon-associated complex TRAP, alpha subunit [Ostreococcus tauri]) HSP 1 Score: 73.2 bits (178), Expect = 1.100e-9 Identity = 46/136 (33.82%), Postives = 70/136 (51.47%), Query Frame = 0 Query: 81 HPLTNMQPSHPDVVTHAYADTKPDNI-VRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLL-FVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVVAP 215 H LT++ ++PDV PD + P G + +N G + +TH+AGSLN P+ F + NFTVE L V+ P EE + Y+F+ + Q+A T FY E D ++TT+FN ++ V+ P Sbjct: 28 HLLTDIPAANPDVEA---VSVFPDYVDPAFPGGERVKVLLGLRNAGNEEVKVTHLAGSLNVPSNFNFYVANFTVETLADAVIKPREEASFTYEFSVDPQFAGHSLQLALTAFY--EETDVAYATTYFNSTVPVLDP 158
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_022838951.1 (Translocon-associated protein (TRAP), alpha subunit [Ostreococcus tauri] >CEF97896.1 Translocon-associated protein (TRAP), alpha subunit [Ostreococcus tauri]) HSP 1 Score: 71.6 bits (174), Expect = 3.300e-9 Identity = 45/136 (33.09%), Postives = 69/136 (50.74%), Query Frame = 0 Query: 81 HPLTNMQPSHPDVVTHAYADTKPDNI-VRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLL-FVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVVAP 215 H LT++ ++PDV PD + P G + +N G + +TH+AGSLN P+ F + NFTVE V+ P EE + Y+F+ + Q+A T FY E D ++TT+FN ++ V+ P Sbjct: 28 HLLTDIPAANPDVEA---VSVFPDYVDPAFPGGERVKVLLGLRNAGNEEVKVTHLAGSLNVPSNFNFYVANFTVETFADAVIKPREEASFTYEFSVDPQFAGHSLQLALTAFY--EETDVAYATTYFNSTVPVLDP 158
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_005705917.1 (translocon-associated protein alpha subunit [Galdieria sulphuraria] >EME29397.1 translocon-associated protein alpha subunit [Galdieria sulphuraria]) HSP 1 Score: 70.9 bits (172), Expect = 5.700e-9 Identity = 42/148 (28.38%), Postives = 71/148 (47.97%), Query Frame = 0 Query: 81 HPLTNMQPSHPDV-------VTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDD------------MFSTTFFNQSI 210 HPL+ PS ++ + + +P +V +GV N GP P + + G+L++PA F + QNFT+ + + + PG+E+T Y F P L P + ++ +FY+GE ++ MF TTF+N S+ Sbjct: 52 HPLSRNLPSSSEIEIAYSFSIENEEKSIQPGTLVDCLVGV--------ANGGPFPYRILAIGGALHSPAQFNYYVQNFTLLYVNYTISPGKELTFSYRFQPHMQLEPANYIMSLDLFYDGEPLEEMTKDQERTLSSVMFRTTFYNASL 191
BLAST of NO04G03820 vs. NCBI_GenBank
Match: XP_013902311.1 (Translocon-associated protein subunit alpha [Monoraphidium neglectum] >KIZ03292.1 Translocon-associated protein subunit alpha [Monoraphidium neglectum]) HSP 1 Score: 70.9 bits (172), Expect = 5.700e-9 Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 0 Query: 83 LTNMQPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFL---RPGAFQVAHTIFYEGEGDDDMFSTTFFNQSI 210 L N+ P+ V H Y PD + P G S+ N G P+ L+ + GS+N+P + + QNFT+ + PG E +++Y F L F VA +FYE EG FSTTFFNQ++ Sbjct: 29 LGNLPPAGELSVAH-YFPEHPDK--QFPAGDIISVVVSGHNTGAKPMNLSAIVGSINSPEKYEMFIQNFTIGRYFAPLAPGAEASIEYKFRADPILGSTPAREFIVALHLFYEVEG--SYFSTTFFNQTV 153
BLAST of NO04G03820 vs. NCBI_GenBank
Match: OAO15480.1 (translocon-associated protein alpha subunit [Blastocystis sp. ATCC 50177/Nand II]) HSP 1 Score: 70.9 bits (172), Expect = 5.700e-9 Identity = 43/133 (32.33%), Postives = 68/133 (51.13%), Query Frame = 0 Query: 81 HPLTNM-QPSHPDVVTHAYADTKPDNIVRLPIGVPTSIFCLFQNQGPSPLTLTHVAGSLNAPATFRVHFQNFTVEPLLFVVPPGEEVTVQYDFTPKTFLRPGAFQVAHTIFYEGEGDDDMFSTTFFNQSILVV 213 HPLT++ +PS VT+ + + P+ P + +N G + +T+ GSLN F V+ QNFT + PG E+ Y F ++ P +Q+A T+FY E D D +++TF N++I VV Sbjct: 71 HPLTDIPEPSSDIEVTYKFLSEE------FPVAEPIRVIVNLKNNGVTVYNVTNCMGSLNDVDDFSVYHQNFTERNFNSTLYPGYEMNFLYVFGIYNYMDPAEYQLALTVFY--ETDSDYYASTFLNETIEVV 195 The following BLAST results are available for this feature:
BLAST of NO04G03820 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03820 ID=NO04G03820|Name=NO04G03820|organism=Nannochloropsis oceanica|type=gene|length=1168bpback to top protein sequence of NO04G03820.1 >NO04G03820.1-protein ID=NO04G03820.1-protein|Name=NO04G03820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=218bpback to top Synonyms
Publications
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