NO04G03760, NO04G03760 (gene) Nannochloropsis oceanica

Overview
NameNO04G03760
Unique NameNO04G03760
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1670
Alignment locationchr4:1015050..1016719 +

Link to JBrowse

Properties
Property NameValue
DescriptionEndonuclease/exonuclease/phosphatase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1015050..1016719 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR036691Endo/exonu/phosph_ase_sf
IPR005135Endo/exonuclease/phosphatase
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
Homology
BLAST of NO04G03760 vs. NCBI_GenBank
Match: WP_008323110.1 (endonuclease/exonuclease/phosphatase [Haloferax elongans] >ELZ87700.1 endonuclease/exonuclease/phosphatase family protein [Haloferax elongans ATCC BAA-1513])

HSP 1 Score: 68.2 bits (165), Expect = 8.500e-8
Identity = 63/213 (29.58%), Postives = 86/213 (40.38%), Query Frame = 0
Query:  292 LKGKVKASTVILWRKDRFAVVYEKDAVTRELVPVEMSTTFFQEQRGDWLNLVRPRGYLTARLLFHGMPLYVV-NTHLNLGEQGYRQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDALAEKGCVEPTWSSRNPLTHGVL-RECDHRCDFIFYRGLLGTGGHRMV-NRRCRLALPFWGNTWLSDHFGIVLDLVLEPSMT 502
            L G +      +  +DR A++      + E+  V +  T       +   +   RG   A +   G P + V +THL       R  Q  EL         +G VVV GD N TP  E    L   + LK    + G   PT    + LT G L R  DH    +F RG  GT   R V +   R+  P  G  W SDH G+V++L   P  T
Sbjct:  147 LPGLIDDEETTVTLRDRDAILVRGGVESTEMPNVTLDATLAVPLGEEGETVEISRGVAAAGVSVSGGPTFAVGSTHLERASSEIRTAQATELAAWAD--QRDGRVVVAGDVNATPGDEAYDTLA--SSLKSVTGDVG---PTCCRSSDLTSGDLSRTVDH----VFVRGFDGTDPTRFVTSDDLRIETP-EGERWPSDHAGVVVNLDAVPIET 347          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: CEM02286.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 67.8 bits (164), Expect = 1.100e-7
Identity = 103/428 (24.07%), Postives = 151/428 (35.28%), Query Frame = 0
Query:  133 LKVLNFNVFAGSPVPVLFNSLLPKTESLDGSERLKLQVERIKAMGPDIICLQEACSDGVERHYREALADLYGSFNDTQAP-------EPLGKVLLFFIYLLLSSFLAFCFHCVLDMWDSFSFPSSPLRAKSIQHSDFTHLLLALVLMCKAYIIVSWSMSKCCLIGFLKGKVKASTVILWRKDRFAVVYEKDAVTRELVPVEMSTTFFQEQRGDWLNLV------RPRGYLTARL--LFHGMP-----------------------------LYVVNTHLNLG-EQGYRQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAG-----LKDALAEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYR------------GLLGTGGHRMVNRRCRLALPFWGN--TWLSDHFGIVLDLVL 497
            L+VL  NVF G              + +    RL  Q++ I+    D+I LQE     V++ Y E   D Y   +  Q         +P+  ++  +++ +LSS       C+     + +FP                                W+    CL            ++L R  RFAV         E V ++  T  +Q     +   V      RPRG++ A L    HG+P                             + +  + L +G     R  QV EL R     G    V++C D N   D  E+Q + +  G      KDAL E G  E +WS  NPLT G L E D R D+I YR            G    G H     R   A   + +  + +SDH+GIV D  +
Sbjct:   12 LRVLTLNVFCG--------------KFMMDDSRLSKQIQLIREQNADVISLQECFDVQVQKRYIEGFPD-YTPISAHQLGRHGFSILQPISNLVFKYVWPVLSSVCCVVTCCLPPRVRAIAFP--------------------------------WASCNDCL----------GLLVLVRSSRFAV---------EEVTIQALT--YQTVLYSYFGCVAETCFFRPRGFILATLSQRTHGLPQSLGPLFPASQGPPAPRSSHGEPQHSAMRVKIACSALAIGVAHPNRIYQVRELVRTITGNGCV-PVILCADTNADVDQPEMQEMLQGEGGDGDVWKDALIECGRHECSWSGDNPLTRGWLAEPDQRNDYIVYRQAVPWAESPSPSGKSSRGLHASSVLRLLSASVIFKDRQSIVSDHYGIVADFAI 370          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: WP_100322733.1 (endonuclease [Xanthomonadaceae bacterium NML91-0213] >PJJ99016.1 endonuclease [Xanthomonadaceae bacterium NML91-0213])

HSP 1 Score: 67.0 bits (162), Expect = 1.900e-7
Identity = 52/147 (35.37%), Postives = 70/147 (47.62%), Query Frame = 0
Query:  352 RLLFHGMPLYVVNTHLNLGEQG--YRQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDALAEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDLVL 497
            R+   G  + V NTHL+  + G   R RQ+ ++  H +  G   SV+V GD N   D+ E+  L   AG  DA A       T S+ NP   G  R  DH    +F R   GTG   +  RR  L  P    TW SDHFG+++D  +
Sbjct:  138 RVAVGGQAVDVFNTHLHWTDDGGAIRARQLGDVLAHVERNGPSASVLV-GDLNAEADAPELHALA-TAGFVDAPAMVDPAMTTLSTLNPHYFGHGRRIDH----VFAR---GTGLRPLAARRV-LDEPGADGTWPSDHFGVLVDFAI 274          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: OBJ85082.1 (hypothetical protein A9W97_19990 [Mycobacterium gordonae])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLNLG-EQGY-RQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDAL--AEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+   + G+ R+ QV +L         +   +VCGDFN  P+S EV+ +     L DA   A  G +  TW++ NP T       D R D+IF       G  ++++       P  G  W SDHFG+V  L
Sbjct:   98 IEPRGALTVEVRVRKRLVSVTSTHLSYQFDAGWVREAQVRQLADFVGTGSGDFPPIVCGDFNARPESNEVRHI--SGLLFDAFQEAHPGELGFTWNNTNPYTSQDPTP-DQRIDYIFVGPRTDDGAGKVLDAAVVCDAPRQG-VWPSDHFGVVAQL 249          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: OBK61811.1 (hypothetical protein A5656_01620 [Mycobacterium gordonae])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLNLG-EQGY-RQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDAL--AEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+   + G+ R+ QV +L         +   +VCGDFN  P+S EV+ +     L DA   A  G +  TW++ NP T       D R D+IF       G  R+++       P  G  W SDHFG+V  L
Sbjct:   98 IEPRGALTVDVRVQKRLVSVTSTHLSYQFDAGWVREAQVRQLADFVGTGSGDFPPIVCGDFNARPESTEVRHI--SGLLFDAFQEAHPGELGFTWNNTNPYT-AQDPTPDQRIDYIFVGPRTADGAGRVLDAAVVCNAPRCG-VWPSDHFGVVTQL 249          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: ODR17251.1 (hypothetical protein BHQ23_27015 [Mycobacterium gordonae])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 50/163 (30.67%), Postives = 71/163 (43.56%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLN--LGEQGYRQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLK-------DA--LAEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+    E   R+ QV +L         +   +VCGDFN  P+S EV  +    GL        DA  +A  G +  TW++ NP T       D R D+IF       G  ++++       P  G  W SDHF +V  L
Sbjct:   97 IEPRGALTVDVRVRNRLVSVTSTHLSYRFDEGWVREAQVRQLADFVGTRSGDFPPIVCGDFNACPESTEVLFMGGMHGLDGQSLHLFDAFEVAHPGELGFTWNNTNPYT-AQDPTPDQRIDYIFVGAHTADGAGKVLDAAVVCDAPRRG-VWPSDHFAVVAQL 257          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: WP_082977923.1 (hypothetical protein [Mycobacterium gordonae])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLNLG-EQGY-RQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDAL--AEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+   + G+ R+ QV +L         +   +VCGDFN  P+S EV+ +     L DA   A  G +  TW++ NP T       D R D+IF       G  ++++       P  G  W SDHFG+V  L
Sbjct:  131 IEPRGALTVEVRVRKRLVSVTSTHLSYQFDAGWVREAQVRQLADFVGTGSGDFPPIVCGDFNARPESNEVRHI--SGLLFDAFQEAHPGELGFTWNNTNPYTSQDPTP-DQRIDYIFVGPRTDDGAGKVLDAAVVCDAPRQG-VWPSDHFGVVAQL 282          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: WP_082993986.1 (hypothetical protein [Mycobacterium gordonae])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 51/156 (32.69%), Postives = 73/156 (46.79%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLNLG-EQGY-RQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDAL--AEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+   + G+ R+ QV +L         +   +VCGDFN  P+S EV+ +     L DA   A  G +  TW++ NP T       D R D+IF       G  R+++       P  G  W SDHFG+V  L
Sbjct:  106 IEPRGALTVDVRVQKRLVSVTSTHLSYQFDAGWVREAQVRQLADFVGTGSGDFPPIVCGDFNARPESTEVRHI--SGLLFDAFQEAHPGELGFTWNNTNPYT-AQDPTPDQRIDYIFVGPRTADGAGRVLDAAVVCNAPRCG-VWPSDHFGVVTQL 257          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: WP_083271378.1 (hypothetical protein [Mycobacterium gordonae] >ORV82844.1 hypothetical protein AWC08_28110 [Mycobacterium gordonae])

HSP 1 Score: 66.6 bits (161), Expect = 2.500e-7
Identity = 50/163 (30.67%), Postives = 71/163 (43.56%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLN--LGEQGYRQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLK-------DA--LAEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+    E   R+ QV +L         +   +VCGDFN  P+S EV  +    GL        DA  +A  G +  TW++ NP T       D R D+IF       G  ++++       P  G  W SDHF +V  L
Sbjct:  106 IEPRGALTVDVRVRNRLVSVTSTHLSYRFDEGWVREAQVRQLADFVGTRSGDFPPIVCGDFNACPESTEVLFMGGMHGLDGQSLHLFDAFEVAHPGELGFTWNNTNPYT-AQDPTPDQRIDYIFVGAHTADGAGKVLDAAVVCDAPRRG-VWPSDHFAVVAQL 266          
BLAST of NO04G03760 vs. NCBI_GenBank
Match: PJE24548.1 (endonuclease [Mycobacterium sp.])

HSP 1 Score: 66.2 bits (160), Expect = 3.200e-7
Identity = 50/156 (32.05%), Postives = 73/156 (46.79%), Query Frame = 0
Query:  343 VRPRGYLTARLLFHGMPLYVVNTHLNLG-EQGY-RQRQVEELTRHCQVLGEEGSVVVCGDFNVTPDSEEVQLLCRRAGLKDAL--AEKGCVEPTWSSRNPLTHGVLRECDHRCDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDL 495
            + PRG LT  +      + V +THL+   + G+ R+ QV +L         +   +VCGDFN  P+S EV+ +     L DA   A  G +  TW++ NP T       D R D+IF       G  ++++       P  G  W SDHFG+V  L
Sbjct:   54 IEPRGALTVDVRVRKRLVSVTSTHLSYQFDAGWVREAQVRQLADFVGTGSGDFPPIVCGDFNARPESTEVRHI--SGLLFDAFQEAHPGELGFTWNNTNPYT-AQDPTPDQRIDYIFVGARTADGAGKVLDAAVVCNAPRCG-VWPSDHFGVVAQL 205          
The following BLAST results are available for this feature:
BLAST of NO04G03760 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
WP_008323110.18.500e-829.58endonuclease/exonuclease/phosphatase [Haloferax el... [more]
CEM02286.11.100e-724.07unnamed protein product [Vitrella brassicaformis C... [more]
WP_100322733.11.900e-735.37endonuclease [Xanthomonadaceae bacterium NML91-021... [more]
OBJ85082.12.500e-732.05hypothetical protein A9W97_19990 [Mycobacterium go... [more]
OBK61811.12.500e-732.69hypothetical protein A5656_01620 [Mycobacterium go... [more]
ODR17251.12.500e-730.67hypothetical protein BHQ23_27015 [Mycobacterium go... [more]
WP_082977923.12.500e-732.05hypothetical protein [Mycobacterium gordonae][more]
WP_082993986.12.500e-732.69hypothetical protein [Mycobacterium gordonae][more]
WP_083271378.12.500e-730.67hypothetical protein [Mycobacterium gordonae] >ORV... [more]
PJE24548.13.200e-732.05endonuclease [Mycobacterium sp.][more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009425NSK009425Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03760.1NO04G03760.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563785gene_2159Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g106gene1827Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03760.1NO04G03760.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03760 ID=NO04G03760|Name=NO04G03760|organism=Nannochloropsis oceanica|type=gene|length=1670bp
ATGCCCGCCGCAAGCACCCCGAGCTTTCACCCCATGTCCGCCACCGTCCC
TGCACCTACCAGAAACGCCAAAAAGAATGTCGCCGCCAGCATATCCACAT
GCGGTGATGCCTCTTCGCCGTGTCTTTGCACGCCGACCTTCCTCTTCACA
GCGAATGACGGGGATTCCCCGGTGTCGTGCGGTCCTGCCCCCCTTTTGAG
CACCCTCCCAAACCTCGGCATCTTGCGAAGTCCTAGTTCCTGCAGCACAA
GCAGCACAAGCAGCAGCATGAGCAGTGCCATAAGCGTGGCTAGCAGCATC
AGCGACGAGGACGAGGTCAGGCCTCATGACGACCTTGAGGATGAGGAGGC
AGCAGGGCACAGGAAAGACCACCGAGAAGAAAAGTACAAGTATCACCTCA
AGGTCCTGAATTTCAATGTATTTGCAGGGTCTCCTGTGCCAGTTTTGTTT
AATAGCCTCCTGCCCAAAACGGAGTCGTTGGATGGGTCAGAGAGACTGAA
GCTGCAGGTTGAGCGAATCAAGGCCATGGGCCCTGATATCATTTGCTTGC
AAGAAGCCTGCTCGGACGGGGTAGAAAGgtacgagtcattgattatggag
agccatcaacgttcacggggcgtatatagatttcccagggctgtaatacc
tacgtgccctctctcacaacccttcggatcacatttattcatcttttcac
tcatcttccgctctccccccctccccccgcatgcgttctcagGCATTACC
GTGAAGCACTTGCTGATTTGTACGGTAGCTTTAATGACACACAAGCACCC
GAGCCTCTGGGGAAGGTCCTGCTCTTCTTCATCTACCTCCTCCTCTCCTC
CTTCCTCGCCTTCTGCTTCCATTGCGTTTTGGACATGTGGGACTCTTTCT
CGTTCCCCTCCTCTCCTCTACGGGCTAAAAGCATCCAGCACTCTGACTTC
ACCCATCTCTTGCTCGCATTAGTATTGATGTGCAAGGCATACATAATTGT
CTCGTGGTCTATGAGCAAGTGTTGCCTCATCGGTTTCTTGAAGGGAAAAG
TCAAGGCCTCTACTGTCATTTTATGGAGGAAAGATCGTTTTGCCGTCGTG
TATGAGAAAGACGCAGTGACAAGAGAGCTGGTACCCGTCGAGATGTCCAC
GACCTTTTTCCAGGAACAGAGAGGGGATTGGTTGAACCTTGTGAGGCCGA
GGGGATACTTGACTGCACGGTTGCTCTTTCACGGCATGCCGTTGTATGTT
GTGAATACGCATTTAAATTTGGGAGAACAAGGCTATAGACAACGGCAGGT
GGAGGAGCTGACGAGGCATTGTCAGGTACTTGGGGAGGAAGGATCAGTTG
TGGTGTGTGGTGACTTTAACGTGACTCCTGACAGTGAGGAAGTGCAGTTA
CTGTGTCGCAGGGCAGGGTTAAAGGACGCGTTGGCCGAGAAGGGCTGCGT
GGAACCAACGTGGTCGAGTCGGAATCCCTTGACGCATGGGGTTCTGCGTG
AGTGTGATCATAGGTGCGATTTTATTTTTTATCGAGGGTTGTTAGGGACA
GGAGGGCATAGGATGGTAAATCGACGGTGTCGATTAGCTTTGCCATTTTG
GGGTAATACGTGGTTGAGCGATCATTTCGGGATTGTCCTTGATCTTGTGT
TGGAGCCTTCGATGACTTAA
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protein sequence of NO04G03760.1

>NO04G03760.1-protein ID=NO04G03760.1-protein|Name=NO04G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MPAASTPSFHPMSATVPAPTRNAKKNVAASISTCGDASSPCLCTPTFLFT
ANDGDSPVSCGPAPLLSTLPNLGILRSPSSCSTSSTSSSMSSAISVASSI
SDEDEVRPHDDLEDEEAAGHRKDHREEKYKYHLKVLNFNVFAGSPVPVLF
NSLLPKTESLDGSERLKLQVERIKAMGPDIICLQEACSDGVERHYREALA
DLYGSFNDTQAPEPLGKVLLFFIYLLLSSFLAFCFHCVLDMWDSFSFPSS
PLRAKSIQHSDFTHLLLALVLMCKAYIIVSWSMSKCCLIGFLKGKVKAST
VILWRKDRFAVVYEKDAVTRELVPVEMSTTFFQEQRGDWLNLVRPRGYLT
ARLLFHGMPLYVVNTHLNLGEQGYRQRQVEELTRHCQVLGEEGSVVVCGD
FNVTPDSEEVQLLCRRAGLKDALAEKGCVEPTWSSRNPLTHGVLRECDHR
CDFIFYRGLLGTGGHRMVNRRCRLALPFWGNTWLSDHFGIVLDLVLEPSM
T*
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Synonyms
Publications