NO04G03740, NO04G03740 (gene) Nannochloropsis oceanica

Overview
NameNO04G03740
Unique NameNO04G03740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1042
Alignment locationchr4:1012109..1013150 +

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Properties
Property NameValue
DescriptionNadh-ubiquinone oxidoreductase subunit
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:1012109..1013150 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: EWM28724.1 (nadh-ubiquinone oxidoreductase subunit [Nannochloropsis gaditana])

HSP 1 Score: 247.3 bits (630), Expect = 2.700e-62
Identity = 112/130 (86.15%), Postives = 120/130 (92.31%), Query Frame = 0 
Query:    1 MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFRG 131
            MATPIGGPPVQD+PPPGGYPKIFYKTRL +RGPPSWAIWTGAILV +YGFVQVGRTNTERRFW+D+KREQKLAL PLLQADED+ WIE   KAL EEAEIMKHVP WKVGESVYKT VTWIPPSVSA++G
Sbjct:    1 MATPIGGPPVQDIPPPGGYPKIFYKTRLGNRGPPSWAIWTGAILVVSYGFVQVGRTNTERRFWSDQKREQKLALAPLLQADEDMIWIERQKKALAEEAEIMKHVPGWKVGESVYKTNVTWIPPSVSAYKG 130
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_009037758.1 (hypothetical protein AURANDRAFT_27550 [Aureococcus anophagefferens] >EGB07777.1 hypothetical protein AURANDRAFT_27550 [Aureococcus anophagefferens])

HSP 1 Score: 120.2 bits (300), Expect = 5.000e-24
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 0 
Query:   10 VQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPS 125
            VQD+PP GGYP + +K    +RGP  W IW G++L  A+GF +VG+ N ER     +KRE ++A++P LQA+ED   +        +EAEIMK V +WKVG SVY ++  W PPS
Sbjct:   19 VQDMPPAGGYPDVIFKKATINRGPDGWMIWVGSLLTVAFGFYRVGQCNLERNAAKKEKREARMAIVPYLQAEEDARAVAAKLNQDADEAEIMKGVKDWKVGASVYNSERFWAPPS 133
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_020693582.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Dendrobium catenatum] >PKU77195.1 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Dendrobium catenatum])

HSP 1 Score: 115.5 bits (288), Expect = 1.200e-22
Identity = 56/122 (45.90%), Postives = 80/122 (65.57%), Query Frame = 0 
Query:    8 PPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            P +QD PPPGG+P + Y  R+ ++GP + AI+  A  V AYG  Q+G+ N  RR   ++K   + A+IP+LQA+ED  +++ + K L EEA+IMK VP WKVGESVY +   W+PP+    R
Sbjct:   19 PVLQDGPPPGGFPPVRYARRIPTKGPGAVAIFLTAFGVFAYGMYQIGQGNKIRRVQKEEKYAARRAIIPVLQAEEDERFVKEWKKYLEEEAKIMKDVPGWKVGESVYNSG-RWVPPATGEIR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_009405992.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Musa acuminata subsp. malaccensis])

HSP 1 Score: 113.6 bits (283), Expect = 4.700e-22
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    8 PPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            P +QD PPPGG+  + Y  R+ S+GP + AI+  A+   ++G  QVG+ N  RR   ++K   + A++P+LQA+ED  +++ +NK L EEA IMK VP WKVGESVY +   W+PPS    R
Sbjct:   19 PVLQDGPPPGGFLPVRYARRIPSKGPSAVAIFLAAVGAFSWGMYQVGQGNRVRRALKEEKYAARRAILPMLQAEEDERFVKEWNKYLEEEARIMKDVPGWKVGESVYNSG-KWVPPSTGELR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_021595685.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B-like [Manihot esculenta] >OAY28188.1 hypothetical protein MANES_15G048500 [Manihot esculenta])

HSP 1 Score: 113.6 bits (283), Expect = 4.700e-22
Identity = 55/129 (42.64%), Postives = 83/129 (64.34%), Query Frame = 0 
Query:    1 MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            MA+    P +QD PPPGG+P + Y  R+ ++GP + AI+  A+   +YG  QVG+ N  RR   ++K   + A++P+LQA+ED  +++ +NK L  EAE+MK VP WKVGE+VY +   W+PP+    R
Sbjct:   12 MASVKDMPILQDGPPPGGFPPVRYARRIPNKGPSAMAIFLAALGTFSYGMYQVGQGNKIRRALKEEKYAARRAILPVLQAEEDERFVKEWNKYLEYEAEVMKDVPGWKVGENVYNSG-RWMPPATGELR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_021606150.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Manihot esculenta] >OAY55450.1 hypothetical protein MANES_03G155100 [Manihot esculenta])

HSP 1 Score: 113.6 bits (283), Expect = 4.700e-22
Identity = 57/129 (44.19%), Postives = 82/129 (63.57%), Query Frame = 0 
Query:    1 MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            MA+    P +QD PPPGG+P + Y  R+ ++GP + AI+  A  V +YG  QVG+ N  RR   ++K   + A++PLLQA+ED  +++ + K L  EAEIMK VP WKVGE+VY +   W+PP+    R
Sbjct:   12 MASVKDMPILQDGPPPGGFPPVRYARRIPNKGPSAMAIFLAAFGVFSYGMYQVGQGNKIRRALKEEKYAARRAILPLLQAEEDERFVKEWKKYLEYEAEIMKDVPGWKVGENVYNSG-RWMPPATGELR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: PKA60599.1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Apostasia shenzhenica])

HSP 1 Score: 113.6 bits (283), Expect = 4.700e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 0 
Query:    8 PPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            P +QD PPPGG+P + Y  R+ ++GP + AI+  A    AYG  Q+G+ N  RR   ++K   + AL+P+LQA+ED  +++ + K L EEA IMK VP WKVGESVY +   W+PP+    R
Sbjct:   19 PVLQDGPPPGGFPPVRYARRIPTKGPSAVAIFLTAFGAFAYGMYQIGKGNRIRRELKEEKYAARRALVPVLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVGESVYHSG-RWVPPATGELR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: CDP19392.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 113.2 bits (282), Expect = 6.100e-22
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0 
Query:    1 MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            MA+    P VQD PPPGG+  + Y  R+ + GP + AI+  A  V +YG  QVG+ N  RR   ++K   + A++PLLQA+ED  ++E + K L EEA IMK VP WKVGE+VY +   W+PP+    R
Sbjct:   12 MASVKDMPLVQDGPPPGGFAPVRYARRIPNSGPSAMAIFLAAFGVFSYGMYQVGKGNKIRRALKEEKYAARSAILPLLQAEEDERFVEEWKKYLEEEARIMKDVPGWKVGENVYNSG-RWMPPATGELR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_010542973.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Tarenaya hassleriana])

HSP 1 Score: 113.2 bits (282), Expect = 6.100e-22
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:    1 MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            MA+    P +QD PPPGG+P I Y  R+ S+GP + AI+       AYG  QVG+ N  RR   ++K   + A++P+LQA+ED  ++  + K L  EAE+MK VP WKVGESVY +   W+PP+    R
Sbjct:   12 MASVKDMPLLQDGPPPGGFPPIRYARRIPSKGPSAMAIFLAVSGAFAYGMYQVGQGNKHRRALKEEKYAARRAILPMLQAEEDERFVSEWRKYLEYEAEVMKDVPGWKVGESVYNSG-RWMPPATGELR 139
[Close]
BLAST of NO04G03740 vs. NCBI_GenBank
Match: XP_010556940.1 (PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-A [Tarenaya hassleriana])

HSP 1 Score: 113.2 bits (282), Expect = 6.100e-22
Identity = 57/129 (44.19%), Postives = 79/129 (61.24%), Query Frame = 0 
Query:    1 MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGFVQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEIMKHVPNWKVGESVYKTKVTWIPPSVSAFR 130
            MA+    P +QD PPPGG+P I Y  R+ S+GP + AI+       AYG  QVG+ N  RR   ++K   + A++P+LQA+ED  ++  + K L  EAE+MK VP WKVGESVY +   W+PP+    R
Sbjct:   12 MASVKDMPLLQDGPPPGGFPPIRYARRIPSKGPSAMAIFLAVSGAFAYGMYQVGQGNKHRRALKEEKYAARRAILPMLQAEEDERFVSEWKKYLEYEAEVMKDVPGWKVGESVYNSG-RWMPPATGELR 139
The following BLAST results are available for this feature:
BLAST of NO04G03740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28724.12.700e-6286.15nadh-ubiquinone oxidoreductase subunit [Nannochlor... [more]
XP_009037758.15.000e-2446.96hypothetical protein AURANDRAFT_27550 [Aureococcus... [more]
XP_020693582.11.200e-2245.90NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
XP_009405992.14.700e-2245.08PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha... [more]
XP_021595685.14.700e-2242.64NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
XP_021606150.14.700e-2244.19NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
PKA60599.14.700e-2245.08NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
CDP19392.16.100e-2244.96unnamed protein product [Coffea canephora][more]
XP_010542973.16.100e-2244.19PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha... [more]
XP_010556940.16.100e-2244.19PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL080nonsL080Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR110ngnoR110Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009428NSK009428Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03740.1NO04G03740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579280gene_2157Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g104gene1829Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03740.1NO04G03740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03740 ID=NO04G03740|Name=NO04G03740|organism=Nannochloropsis oceanica|type=gene|length=1042bp
CCCTCTCTCAACCCCACAATTCAACCTCGCAGGATGGCGACACCAATCGG
CGGGCCGCCTGTGCAAGACGTCCCTCCGCCCGGAGGATATCCCAAGgtaa
gcccaaaaagcagacttgttgctctcccttctccctgctctcccccattc
cacctcccggcttgcctatgtccacgtcgtctctgtccactatgggtacc
gcaggccgtgcttgcgttcccattatccctgcagtatatatccacgcctc
tccttcctctcttccccctctttcatcacccgcatcctccttcccacctc
ttcccccattcctgaccacgccccaaatcccaccattttagATTTTTTAC
AAGACCCGCCTCGCTTCCCGGGGCCCGCCAAGCTGGGCAATATGGACTGG
GGCCATTCTGGTGTGTGCGTACGGCTTCGTCCAAGTCGGTCGCACCAACA
CGGAACGTCGTTTCTGGGCCGACAAGAAACGCGAGCAAAAACTCGCCTTG
ATTCCGTTGTTGCAAGCAGACGAGGACCTGACCTGGATCGAAAACTACAA
TAAGGCATTGGTGGAGGAAGCGGAGATTATGAAGCATGTCCCGAACTGGA
AGGTGGGCGAGAGTGTATATAAGACCAAGGTGACTTGGATCCCGCCATCG
GTGTCGGCATTTAGGGGGGGAAAGTAGAAGAGGGTAGGGAAGGAGGATGA
GGAGATGAGGAATGACCTTGTGGAAAGAAGAACAAGGAAGTTGAATAGTG
GAATGAAAGGGGATAGGGGAGGGGAGAGCTGGGGATGCAGAGGTGGAGGG
ATGAAGGCAGGTTGGGATGCGATTTGTGAGAAGTAGTGAGTTCGAGATGG
CGGATCTTAATGCTCTGTTATCGAAAGTGTACTGGTGTTTGTTACTTTGT
TTGTGTGACAAAGCAGAGCGGGAAACAAGTGAACGAAATTACCGCCCCCA
AAAACTTTTTTGGGGAAAGAGAATTGAAGGAAAGAACGACGATGACGAGT
TTTACCGATTGATTGTACGTGTGGTTGCGTTGCCGAGGGAAA
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protein sequence of NO04G03740.1

>NO04G03740.1-protein ID=NO04G03740.1-protein|Name=NO04G03740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=133bp
MATPIGGPPVQDVPPPGGYPKIFYKTRLASRGPPSWAIWTGAILVCAYGF
VQVGRTNTERRFWADKKREQKLALIPLLQADEDLTWIENYNKALVEEAEI
MKHVPNWKVGESVYKTKVTWIPPSVSAFRGGK*
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Synonyms
Publications