NO04G03640, NO04G03640 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03640 vs. NCBI_GenBank
Match: EWM28678.1 (elongation factor ts [Nannochloropsis gaditana]) HSP 1 Score: 193.7 bits (491), Expect = 4.000e-46 Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 0 Query: 29 RAFATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPP 137 R++A APLALVKELR ASGAPITDCKKALEAEGV+GD+AKAFEWLRKKGQATVMKNNRAANEGLVGIAVEG AGVIVEVNSETDFVARNADFQAF+KDLA AIL MPP Sbjct: 31 RSYAAAPLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPP 138
BLAST of NO04G03640 vs. NCBI_GenBank
Match: CBJ48335.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 121.7 bits (304), Expect = 1.900e-24 Identity = 61/92 (66.30%), Postives = 77/92 (83.70%), Query Frame = 0 Query: 36 LALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG--QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIK 126 +AL+KELR+ASGAP+ DCK AL AEGV GD+A+AF+WLRK+G +AT M +R+ANEGL+G+ V+G G +VEVNSETDFVARNA FQ F+K Sbjct: 45 MALIKELREASGAPVVDCKNALAAEGVNGDIAQAFQWLRKRGIAKATSMA-DRSANEGLIGLRVDGPHGALVEVNSETDFVARNAKFQEFVK 135
BLAST of NO04G03640 vs. NCBI_GenBank
Match: EWM20492.1 (elongation factor ts, partial [Nannochloropsis gaditana]) HSP 1 Score: 118.2 bits (295), Expect = 2.100e-23 Identity = 61/98 (62.24%), Postives = 73/98 (74.49%), Query Frame = 0 Query: 35 PLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133 P+ L+K+LR SGAPI DCKKAL E + D+ AF+WLRKKGQAT+ K +RA EGLV +AV+G+ GV VEVNSETDFVARNADFQ F+ A L Sbjct: 49 PMDLIKKLRGMSGAPIMDCKKALAEEKL--DVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTAL 144
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_088520769.1 (elongation factor Ts [Rhodoblastus acidophilus] >SNB70911.1 elongation factor Ts [Rhodoblastus acidophilus] >PPQ39755.1 elongation factor Ts [Rhodoblastus acidophilus]) HSP 1 Score: 105.1 bits (261), Expect = 1.900e-19 Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 0 Query: 32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLA 129 A ALVK+LR+ +GA + DCK+AL A EGD+ A +WLRKKG K++R A EGLVGIA+ G+ GV+VEVNSETDFVARN +FQA +K +A Sbjct: 2 ANITAALVKDLREKTGAGMMDCKQALNA--TEGDIEAAVDWLRKKGLSKAAKKSDRVAAEGLVGIAISGTTGVVVEVNSETDFVARNEEFQALVKTIA 97
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_021097052.1 (elongation factor Ts [Rubellimicrobium thermophilum] >EPX86144.1 translation elongation factor Ts (EF-Ts) [Rubellimicrobium thermophilum DSM 16684]) HSP 1 Score: 104.0 bits (258), Expect = 4.100e-19 Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 0 Query: 33 TAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQA-TVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133 T ++VKELR+A+GA + D KKAL GD+ A +WLR KG A K+ R A EGLVG+AVEG GV+VEVNSETDFVA+NA+FQA ++D+A A L Sbjct: 2 TITASMVKELREATGAGMMDAKKALTE--TNGDMDAAIDWLRTKGLAKAAKKSGRTAAEGLVGVAVEGGRGVVVEVNSETDFVAKNAEFQALVRDVAHAAL 100
BLAST of NO04G03640 vs. NCBI_GenBank
Match: PCI38563.1 (elongation factor Ts [Rhodospirillaceae bacterium]) HSP 1 Score: 104.0 bits (258), Expect = 4.100e-19 Identity = 59/102 (57.84%), Postives = 68/102 (66.67%), Query Frame = 0 Query: 32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133 A ALVKELR+ SGA + DCKKAL G GDL A +WLR KG A K+ R A EGLVG+AV+GS G +VEVNSETDFVARN FQ F+ +A L Sbjct: 2 AAITAALVKELRETSGAGMMDCKKALTETG--GDLTAAADWLRTKGLAAAAKKSGRVAAEGLVGVAVDGSKGAVVEVNSETDFVARNEQFQGFVSAVAKLAL 101
BLAST of NO04G03640 vs. NCBI_GenBank
Match: OYZ36485.1 (translation elongation factor Ts [Alphaproteobacteria bacterium 16-39-46] >OZA41768.1 translation elongation factor Ts [Alphaproteobacteria bacterium 17-39-52]) HSP 1 Score: 103.2 bits (256), Expect = 7.100e-19 Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 0 Query: 38 LVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKG-QATVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLA 129 LVK LR+ +GA + DCKKALEA V+GDL + +WLRKKG A K+ R A+EGL+GI +G+AGV++EVN+ETDFVARN FQ F+K ++ Sbjct: 8 LVKTLREKTGAGMMDCKKALEA--VKGDLEEGIDWLRKKGLSAAAKKSGRVASEGLIGIVTKGTAGVLLEVNAETDFVARNEQFQKFVKTVS 97
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_106335375.1 (elongation factor Ts [Alsobacter sp. SH9] >PSC06461.1 elongation factor Ts [Alsobacter sp. SH9]) HSP 1 Score: 103.2 bits (256), Expect = 7.100e-19 Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 0 Query: 32 ATAPLALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQA-TVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAIL 133 AT ALVK+LR+ +GA + DCK ALEA G GD+ +A +WLRKKG A K+ R A EGLV +AV + GV+VEVNSETDFVARN +FQA ++ +A L Sbjct: 2 ATITAALVKDLREKTGAGMMDCKAALEANG--GDVEQAIDWLRKKGLAKAAKKSGRVAAEGLVAVAVRENRGVVVEVNSETDFVARNEEFQALVRTVADVAL 101
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_043918885.1 (elongation factor Ts [Jannaschia aquimarina] >KIT16190.1 Elongation factor Ts [Jannaschia aquimarina] >SNT40080.1 translation elongation factor Ts (EF-Ts) [Jannaschia aquimarina]) HSP 1 Score: 102.8 bits (255), Expect = 9.200e-19 Identity = 56/100 (56.00%), Postives = 70/100 (70.00%), Query Frame = 0 Query: 37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQA-TVMKNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMP 136 A VKELRD++GA + D KKAL +GD+ A +WLR KG A K+ R A EGLV +AVEG GV VEVNSETDFVA+NA+FQ +KD+A L++P Sbjct: 6 AQVKELRDSTGAGMMDAKKALTE--TDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGTGVAVEVNSETDFVAKNAEFQTMVKDIAQTALNVP 103
BLAST of NO04G03640 vs. NCBI_GenBank
Match: WP_062732287.1 (elongation factor Ts [Sphingobium abikonense]) HSP 1 Score: 102.8 bits (255), Expect = 9.200e-19 Identity = 61/110 (55.45%), Postives = 71/110 (64.55%), Query Frame = 0 Query: 37 ALVKELRDASGAPITDCKKALEAEGVEGDLAKAFEWLRKKGQATVM-KNNRAANEGLVGIAVEGSAGVIVEVNSETDFVARNADFQAFIKDLATAILHMPPPWANMASSA 146 A VKELRD SGA + DCKKAL GDL A +WLR KG A K++R A EGLVG+AV G+ GV VEVNSETDFVA+N FQ F++ +AT L A SSA Sbjct: 7 AAVKELRDRSGAGMMDCKKALTE--ANGDLEAATDWLRAKGLAAAQKKSSRTAAEGLVGVAVAGTKGVAVEVNSETDFVAKNDQFQDFVRTVATVALETGAADAEALSSA 114 The following BLAST results are available for this feature:
BLAST of NO04G03640 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03640 ID=NO04G03640|Name=NO04G03640|organism=Nannochloropsis oceanica|type=gene|length=447bpback to top protein sequence of NO04G03640.1 >NO04G03640.1-protein ID=NO04G03640.1-protein|Name=NO04G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=149bpback to top Synonyms
Publications
|