NO04G03560, NO04G03560 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03560 vs. NCBI_GenBank
Match: EWM28812.1 (trna (guanine-n -)-methyltransferase [Nannochloropsis gaditana]) HSP 1 Score: 204.1 bits (518), Expect = 4.800e-49 Identity = 117/212 (55.19%), Postives = 139/212 (65.57%), Query Frame = 0 Query: 28 NLRSLALVWRAEGGVGKERI---SLPRIAEGALRVAGRPCYCSSSSRGSVAFCDKSGTDIGASTDDEEEASTTVGKVEKGG----DETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEIVR 233 NL +A + RA KE + S+P ++ G L+ C C+ R K TDI A D EA +E GG T S R G KKKLRAIRQHVNPLSSLYQRP ++ WV+ AFA P LPFHIDIGSARGRFCI MARE ++NFLGLEIRRPCVEE+ KKMEKY +KDNVHF+ALN NVD++R+V DV++ SEIVR Sbjct: 29 NLHGMAFLLRAGVKARKEYLWHDSIPHLSSGGLK---SRCLCAGPQREG---GKKEYTDIHA-LQDGNEALCAEDSIENGGMRSEQNKTLSSRAGAKKKLRAIRQHVNPLSSLYQRPANISAKWVEDAFANPSLPFHIDIGSARGRFCIYMAREHPDMNFLGLEIRRPCVEESFKKMEKYRVKDNVHFLALNVNVDLERIVADVRKHSEIVR 233
BLAST of NO04G03560 vs. NCBI_GenBank
Match: CEL92745.1 (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 113.2 bits (282), Expect = 1.100e-21 Identity = 50/107 (46.73%), Postives = 70/107 (65.42%), Query Frame = 0 Query: 119 KLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQ 226 K R R HVNP S +QRPVDL + W + F KP LP H+D+GSA G FC+ MA + N+LG+EIR VE A+ + +K G + N HF+ N NV++DR++ D++ Sbjct: 75 KFRRPRNHVNPFSPFHQRPVDLEDRWPEKVFEKPSLPLHVDLGSAYGHFCMAMAEKYPSHNYLGVEIRTKVVEHAISQRDKAG-QRNAHFIGCNVNVNLDRILTDIE 180
BLAST of NO04G03560 vs. NCBI_GenBank
Match: KOO25126.1 (tRNA (guanine-n -)-methyltransferase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 102.4 bits (254), Expect = 2.000e-18 Identity = 47/109 (43.12%), Postives = 67/109 (61.47%), Query Frame = 0 Query: 114 GGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVK 223 GG R IR HVNPL +Q + L E W + FA+P LP H+DIG ARG FC+D+A +E N LGLEIR + A + +++G+ N F+A NAN ++D +++ Sbjct: 2 GGRSIGKRKIRHHVNPLKDTHQAKLQLEERWPERLFARPELPLHVDIGCARGLFCLDLASSSAEANVLGLEIRAALADAATEDAQRFGL-HNAAFLACNANTNLDEILR 109
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_006528657.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Gloeocapsa sp. PCC 73106] >ELR98507.1 tRNA (guanine-N(7)-)-methyltransferase [Gloeocapsa sp. PCC 73106]) HSP 1 Score: 102.1 bits (253), Expect = 2.600e-18 Identity = 52/122 (42.62%), Postives = 83/122 (68.03%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRV---VKDVQEQSEIVRCGYRWRMER 242 +RQHVNPLS YQ+P+ LP+ W + + PFH+D+G ARG+F I +A+ ++E+NFLG+EIR+P V++A K++EK G+K NV+F+ NAN + ++ + +Q QS ++ W +R Sbjct: 6 VRQHVNPLSFKYQQPIQLPD-W-STVYTNINQPFHLDLGCARGKFLISLAQIQTEMNFLGIEIRQPLVKDATKEVEKLGLK-NVYFLFGNANNYLKQILASIPQLQLQSVTIQFPDPWFKKR 124
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_106920436.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [filamentous cyanobacterium CCP3] >PSR18738.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB [filamentous cyanobacterium CCP3]) HSP 1 Score: 100.5 bits (249), Expect = 7.500e-18 Identity = 50/108 (46.30%), Postives = 70/108 (64.81%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231 +RQHVNPLS YQ PV++P W AAFA P P HIDIG +G F + MA E NFLGLEIR+P VE A K+ ++ G+ N+HF+ N N+ + +++ +Q+ + Sbjct: 18 VRQHVNPLSGKYQAPVEVP-NW-SAAFATPRQPLHIDIGCGKGVFLLSMAELAPEWNFLGLEIRKPVVESAQKRQQETGL-SNLHFMYCNVNISLRALLEGWGDQNPL 122
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_035992464.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Leptolyngbya sp. KIOST-1]) HSP 1 Score: 100.1 bits (248), Expect = 9.800e-18 Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231 +RQHVNPLS YQ PV +P+ W AFA P P HIDIG +G F + MA+ + E NFLGLEIR+P VE A K+ ++ G+ N+HF+ N N+ + +++ +Q+ + Sbjct: 6 VRQHVNPLSERYQAPVAMPD-W-SEAFANPQQPLHIDIGCGKGVFALHMAQLQPEWNFLGLEIRKPVVESAQKRQQEAGL-SNLHFMYCNVNISLRALLESWGDQNPL 110
BLAST of NO04G03560 vs. NCBI_GenBank
Match: WP_073610617.1 (tRNA (guanosine(46)-N7)-methyltransferase TrmB [Phormidium tenue] >OKH44511.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB [Phormidium tenue NIES-30]) HSP 1 Score: 99.0 bits (245), Expect = 2.200e-17 Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 0 Query: 123 IRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQEQSEI 231 +RQHVNPLS YQ PV++P W A FA P P HIDIG A+G F + MA+ + E NFLGLEIR+P VE A K+ ++ + N+HF+ N N+ + +++ +Q+ + Sbjct: 6 VRQHVNPLSGKYQAPVEVP-NW-SAVFANPQQPLHIDIGCAKGVFLLQMAQLQPEWNFLGLEIRKPVVESAQKRQQEAEL-TNLHFMYCNVNISLRSLLESWGDQNPL 110
BLAST of NO04G03560 vs. NCBI_GenBank
Match: CBJ48289.1 (tRNA (guanine-N(7)-)-methyltransferase [Ectocarpus siliculosus]) HSP 1 Score: 98.6 bits (244), Expect = 2.800e-17 Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 0 Query: 107 ETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGWVKAAFAKPHLPFHIDIGSARGRFCIDMAREKSEINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVVKDVQE 227 E GSP ++K++ RQHVNPL++ +Q PV LPE W +AAF P +DIG A+G F MA E E N+LGLEIRRP AL++ G + N H V NANVD+D V+ + + Sbjct: 2 EKLGSPD---RRKVKT-RQHVNPLAATFQAPVVLPERWFQAAFRDLSAPLLVDIGCAKGSFVRAMATEHPERNYLGLEIRRPTAALALERAAGLGTR-NCHVVCCNANVDLDAVLTEAAQ 116
BLAST of NO04G03560 vs. NCBI_GenBank
Match: XP_005776409.1 (hypothetical protein EMIHUDRAFT_310327 [Emiliania huxleyi CCMP1516] >EOD23980.1 hypothetical protein EMIHUDRAFT_310327 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 98.6 bits (244), Expect = 2.800e-17 Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 0 Query: 116 IKKKLRAIRQHVNPLSSLYQRPVDLPEGW-VKAAFAKPHLPFHIDIGSARGRFCIDMAREKS-EINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVV 222 +KKK IR HVNPL ++ +P+DLPE W + AF +P LP H+DIG ARG FC+D+A E S N LGLEIR E A + + G+ N F+ NANV+++ V+ Sbjct: 4 VKKK---IRHHVNPLKDVHMQPLDLPERWPEEGAFTQPDLPLHVDIGCARGLFCLDLAAESSGSANVLGLEIRSALAEAAAEDARRLGVA-NAAFLPCNANVNLEAVL 107
BLAST of NO04G03560 vs. NCBI_GenBank
Match: XP_005766712.1 (hypothetical protein EMIHUDRAFT_76396 [Emiliania huxleyi CCMP1516] >EOD14283.1 hypothetical protein EMIHUDRAFT_76396 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 97.4 bits (241), Expect = 6.300e-17 Identity = 60/148 (40.54%), Postives = 79/148 (53.38%), Query Frame = 0 Query: 76 FCDKSGTDIGASTDDEEEASTTVGKVEKGGDETTGSPRGGIKKKLRAIRQHVNPLSSLYQRPVDLPEGW-VKAAFAKPHLPFHIDIGSARGRFCIDMAREKS-EINFLGLEIRRPCVEEALKKMEKYGIKDNVHFVALNANVDIDRVV 222 FC G + D S T G + G G KKK IR HVNPL ++ +P+DLPE W + AF +P LP H+DIG ARG FC+D+A E S N LGLEIR E A + + G+ N F+ NANV+++ V+ Sbjct: 15 FCRPRGCPL-LCAPDSPSISPTAGATRSRFGQHQGGRSLGKKKK---IRHHVNPLKDVHMQPLDLPERWPEEGAFTQPDLPLHVDIGCARGLFCLDLAAESSGSANVLGLEIRSALAEAAAEDARRLGVA-NAAFLPCNANVNLEAVL 157 The following BLAST results are available for this feature:
BLAST of NO04G03560 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03560 ID=NO04G03560|Name=NO04G03560|organism=Nannochloropsis oceanica|type=gene|length=1678bpback to top protein sequence of NO04G03560.2 >NO04G03560.2-protein ID=NO04G03560.2-protein|Name=NO04G03560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=244bpback to top protein sequence of NO04G03560.1 >NO04G03560.1-protein ID=NO04G03560.1-protein|Name=NO04G03560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bpback to top Synonyms
Publications
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