NO04G03550, NO04G03550 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03550 vs. NCBI_GenBank
Match: EWM28734.1 (tRNA/rRNA methyltransferase, SpoU [Nannochloropsis gaditana]) HSP 1 Score: 281.6 bits (719), Expect = 2.500e-72 Identity = 150/250 (60.00%), Postives = 172/250 (68.80%), Query Frame = 0 Query: 12 KESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQPGRTGEVDKEEQQRLQAERRQQRQVADILSQQE------------GGKGEEEGEGWPDLWGADDYSSK 250 KE MVAIEV++KTNAGT VRCSVAFG LCLVGVGRPRFSKHGSFGSHHYL TR+F+SW+ALRQ ADN+K+ VIGV A + SV RPF G TIFV+ T+GKTLT EQ ACH LVHV + GGPA +A FS GGGLTL+ DVALS+VLHHFTAWS+ HRF GQKYV GQ + G+ + EEQ RL+ ERRQQR ADILSQ E + EE+ W WG + K Sbjct: 13 KEKGEQSQFMVAIEVEKKTNAGTLVRCSVAFGATSLCLVGVGRPRFSKHGSFGSHHYLPTRSFTSWQALRQFADNRKFHVIGVSSSSACRTTSVSLRPFEGSTIFVSPTRGKTLTTEQLQACHFLVHVRVAGGPAVDAAFSTLGGGLTLDTDVALSIVLHHFTAWSRYNTHRFCGQKYVKGQARKVGQFEDEEQHRLRNERRQQRLKADILSQPETESTEVTNAEEVNQEAEEKVSIWSGFWGKGALAEK 262
BLAST of NO04G03550 vs. NCBI_GenBank
Match: PNW83678.1 (hypothetical protein CHLRE_05g238950v5 [Chlamydomonas reinhardtii]) HSP 1 Score: 96.7 bits (239), Expect = 1.200e-16 Identity = 67/211 (31.75%), Postives = 102/211 (48.34%), Query Frame = 0 Query: 1 MEASPPQQDNKK------------ESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRT 198 ME S DN++ + GP ++ V ++ N GT VR + AFG +CL VG +F+ GS GS +++ R F + QH + + RV+GV E +L V + PF GPT F+ +G+ +T+ Q A C V++P G G +L VA S+VLHHF W+ + +G K+V+ + P RT Sbjct: 1 MEPSQASNDNERVAEAGSSAAEAPSTSGPASYIITHSVSKRHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQHLKEVEGCRVLGV--EICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHG-----------AGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEKPQRT 196
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_002953134.1 (hypothetical protein VOLCADRAFT_63297 [Volvox carteri f. nagariensis] >EFJ45733.1 hypothetical protein VOLCADRAFT_63297, partial [Volvox carteri f. nagariensis]) HSP 1 Score: 95.9 bits (237), Expect = 2.000e-16 Identity = 63/176 (35.80%), Postives = 92/176 (52.27%), Query Frame = 0 Query: 16 GPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNG--PTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWS---QREAHRFQ 186 GPP ++ V ++ N GT VR + AFG +CL VG +F+ GS GS +++ + F + + QH D + RV+G+ E +L VH+ PF G PT F+ +G+ L+E Q A C V++P GP G +L VA S+VLHHF W +RE H F+ Sbjct: 21 GPPCFIITHSVSKRHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFKHFDTLQQCVQHLKDVEGCRVLGI--EICEGALPVHEHPFTGSSPTAFLLGNEGQGLSERQMALCDGFVYIP-QHGP----------GTASLNVAVAASIVLHHFAVWGAYPERERHGFK 181
BLAST of NO04G03550 vs. NCBI_GenBank
Match: GAX79628.1 (hypothetical protein CEUSTIGMA_g7069.t1 [Chlamydomonas eustigma]) HSP 1 Score: 94.7 bits (234), Expect = 4.400e-16 Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 0 Query: 1 MEASPPQQ----DNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWK-ALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG 193 M+A P++ + GP ++ V ++ N GT RC+ AFG +CL VG +F+ GS GS Y+ + + + + Q + + ++GV E +L VH PF+G T F+ +G+ L+ +Q A C V++P GP G +L VA S+VLHHF W++ + QGQK+V+G Sbjct: 1 MQALDPKEQASTSGNDQDGGPDCYVILHSVAKRHNVGTIARCATAFGVKEMCL--VGSRQFNTFGSHGSDAYVDIGHYQTLELCVIQLKEEKGCEIVGV--EIVEGALPVHSHPFSGSTAFMLGNEGQGLSPKQLALCDRFVYIP-QHGP----------GTASLNVAVACSIVLHHFALWAKYDERERQGQKFVVG 182
BLAST of NO04G03550 vs. NCBI_GenBank
Match: PSC75588.1 (family tRNA rRNA methyltransferase [Micractinium conductrix]) HSP 1 Score: 94.4 bits (233), Expect = 5.700e-16 Identity = 73/214 (34.11%), Postives = 102/214 (47.66%), Query Frame = 0 Query: 17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSS----WKALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG-QPGRTG-----EVDKEEQQRLQAERRQQRQVAD 221 P ++ V +K N GT RC+ AF A +CL VG +F+ G+ G+ Y+S SS +LRQ N+ ++GV E + VH PF G T F+ +G+ L E Q A C +++P G G +L VA S+VLHHF W+ E +GQK+VLG +P RT + EEQ +A RRQ D Sbjct: 45 PRSWLIQYNVSKKHNIGTLARCATAFNVAEVCL--VGSRQFNSFGAHGADSYVSFSHHSSLDECCASLRQ---NKGCTIVGV--EIVEGARPVHNFPFRGNTAFMLGNEGQGLNERQVALCDEFIYIPQYG-----------PGTASLNVAVAASIVLHHFALWAGYEERAREGQKFVLGDRPQRTAARGVVPLTAEEQAAERARRRQSAADGD 240
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_001697715.1 (predicted protein, partial [Chlamydomonas reinhardtii]) HSP 1 Score: 93.2 bits (230), Expect = 1.300e-15 Identity = 60/179 (33.52%), Postives = 92/179 (51.40%), Query Frame = 0 Query: 21 MVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQH-ADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRT 198 ++ V ++ N GT VR + AFG +CL VG +F+ GS GS +++ R F + QH + + RV+GV E +L V + PF GPT F+ +G+ +T+ Q A C V++P G G +L VA S+VLHHF W+ + +G K+V+ + P RT Sbjct: 3 IITHSVSKRHNIGTIVRSATAFGVKEVCL--VGSRQFNTFGSHGSDAHVAFRHFDTLAKCVQHLKEVEGCRVLGV--EICEGALPVQEHPFTGPTAFLLGNEGQGMTDRQMALCDGFVYIPQHG-----------AGTASLNVAVAASIVLHHFAIWAAYPERQREGYKFVVAEKPQRT 166
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_005647853.1 (hypothetical protein COCSUDRAFT_66262 [Coccomyxa subellipsoidea C-169] >EIE23309.1 hypothetical protein COCSUDRAFT_66262 [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 93.2 bits (230), Expect = 1.300e-15 Identity = 70/221 (31.67%), Postives = 108/221 (48.87%), Query Frame = 0 Query: 17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQK-YRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRTGEVD----KEEQQRLQAERRQQRQVA----DILSQQEG 228 P ++ V ++ N GT VR + AF +CLVG +F+ GS GS Y++ R F S + + K R++GV E A ++ +H PF+GPT F+ +G L+ +Q C + V++P G G +L VA S+VL HF AW+ G KY +G+ P RTG EE++ + ERR +++ A D+L +G Sbjct: 28 PGCYLIVHNVSKRHNIGTLVRSAAAFSVTEVCLVGA--RQFNTFGSHGSADYVNYRHFPSLQECCHYLKQDKGCRIMGV--EIAEDAQPIHAHPFSGPTAFMLGNEGSGLSPQQVQLCDAFVYIPQYG-----------AGTASLNVTVAASIVLQHFAAWAGYAERPRSGAKYDVGERPPRTGARGTVPLTEEERAAERERRLKKKAAANGHDVLQGSDG 233
BLAST of NO04G03550 vs. NCBI_GenBank
Match: GAX86423.1 (hypothetical protein CEUSTIGMA_g13833.t1 [Chlamydomonas eustigma]) HSP 1 Score: 91.7 bits (226), Expect = 3.700e-15 Identity = 61/197 (30.96%), Postives = 98/197 (49.75%), Query Frame = 0 Query: 1 MEASPPQQ----DNKKESQGPPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWK-ALRQHADNQKYRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLG 193 M+A P++ + GP ++ V ++ N GT RC+ AFG +CL VG +F+ GS GS Y+ + + + + Q + + ++GV E +L VH PF+ T F+ +G+ L+ +Q A C V++P GP G +L VA S+VLHHF W++ + QGQK+V+G Sbjct: 1 MQALDPKEHASTSGNDQDGGPDCYVILHSVAKRHNVGTIARCATAFGVKEMCL--VGSRQFNTFGSHGSDAYVDIGHYQTLELCVIQLKEEKGCEIVGV--EIVEGALPVHSHPFSRSTAFMLGNEGQGLSPKQLALCDRFVYIP-QHGP----------GTASLNVAVACSIVLHHFALWAKYDERERQGQKFVVG 182
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_011400754.1 (tRNA (guanosine(18)-2'-O)-methyltransferase [Auxenochlorella protothecoides] >KFM27767.1 tRNA (guanosine(18)-2'-O)-methyltransferase [Auxenochlorella protothecoides]) HSP 1 Score: 91.3 bits (225), Expect = 4.900e-15 Identity = 57/176 (32.39%), Postives = 87/176 (49.43%), Query Frame = 0 Query: 17 PPHLMVAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQK-YRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVL 192 P ++ V +K N GT RC+ AF +CLVG RF+ GS GS ++ +S +A Q +K +++GV E +L VH PF GPT F+ +G+ L+E Q C + +++P G G +L VA S+VLHHF W+ +GQK+++ Sbjct: 4 PESYVILHNVSKKHNVGTISRCATAFNVTQICLVGSN--RFNAFGSHGSDAHVDFGWHASIEACCQELREEKGAQIVGV--EIMPSALPVHSFPFRGPTAFMLGNEGQGLSERQIRNCDAFIYIPQYG-----------AGTASLNVAVAASIVLHHFALWAGFPERGREGQKFIV 164
BLAST of NO04G03550 vs. NCBI_GenBank
Match: XP_001415856.1 (predicted protein [Ostreococcus lucimarinus CCE9901] >ABO94148.1 predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 89.7 bits (221), Expect = 1.400e-14 Identity = 64/217 (29.49%), Postives = 108/217 (49.77%), Query Frame = 0 Query: 22 VAIEVDRKTNAGTTVRCSVAFGTACLCLVGVGRPRFSKHGSFGSHHYLSTRAFSSWKALRQHADNQK--YRVIGVCLERAVESLSVHKRPFNGPTIFVTSTKGKTLTEEQRAACHSLVHVPIMGGPAANAVFSPSGGGLTLEADVALSVVLHHFTAWSQREAHRFQGQKYVLGQ-PGRT---GEVDKEEQQRLQAERRQQRQVADILSQQEGGKGEE 233 +A V +K N GT RC AFG L L +G +F+ GS G+ ++ F S + R+ ++ +++GV E ++ ++ PF G T F+ +G +TE Q+A C V++P G G +L VA S+V+HHF +W+ E +G+K+++ + P RT GEV + +Q R +R A L +++ +GE+ Sbjct: 4 LAHNVAKKHNIGTMARCCTAFGVKSLVL--IGSRQFNTFGSHGADGHVHFEHFDSLEEAREKLKGERGCTQILGV--EIVDDARAIESHPFTGNTAFIMGNEGHGMTEAQKAICDGFVYIPQYG-----------PGTASLNVSVAASIVMHHFASWAGYEERSREGEKFIVAERPQRTRKRGEVGESPEQ-----VRARRAAARALDKEQETRGED 200 The following BLAST results are available for this feature:
BLAST of NO04G03550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03550 ID=NO04G03550|Name=NO04G03550|organism=Nannochloropsis oceanica|type=gene|length=994bpback to top protein sequence of NO04G03550.1 >NO04G03550.1-protein ID=NO04G03550.1-protein|Name=NO04G03550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=261bpback to top Synonyms
Publications
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