NO04G03520, NO04G03520 (gene) Nannochloropsis oceanica

Overview
NameNO04G03520
Unique NameNO04G03520
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1714
Alignment locationchr4:962345..964058 -

Link to JBrowse

Properties
Property NameValue
DescriptionPhenylalanyl-trna synthetase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:962345..964058 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004826phenylalanine-tRNA ligase activity
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0000049tRNA binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0003824catalytic activity
GO:0003723RNA binding
GO:0000166nucleotide binding
Vocabulary: Biological Process
TermDefinition
GO:0006432phenylalanyl-tRNA aminoacylation
GO:0043039tRNA aminoacylation
GO:0006412translation
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR036690Fdx_antiC-bd_sf
IPR006195aa-tRNA-synth_II
IPR004530Phe-tRNA-synth_IIc_mito
IPR002319Phenylalanyl-tRNA_Synthase
IPR005121PheS_beta_Fdx_antiC-bd
Homology
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: EWM28680.1 (phenylalanyl-trna synthetase [Nannochloropsis gaditana])

HSP 1 Score: 750.4 bits (1936), Expect = 3.300e-213
Identity = 372/441 (84.35%), Postives = 393/441 (89.12%), Query Frame = 0 
Query:    1 MKAMAPILLACYMSGAGAVAAAGGMTARYTRVFVRPLGSNPAAATRRXXXXXXXRHMMMASASSVAEGKQLDARVHTGHHKNNVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGVAVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            MKAMAPILLAC MSGA A AAA G   R TR FV P+   P   +         RH ++++AS+VAEGK LD RVHT H  NNVPV LS KIGR+LHRNPSHPLGIIKDRIEGYF+ERAATTGVAVE  DN FPVV IVNNFDDLLIPPDHVSRSPIDTYYVDD+QVLRTHTSAHQSTMLGKG EAFLVTGDVYRRDEIDRTHYPVFHQMEGVR+FPGLLE  GSREEGVK VEKDLK+ALEGMV+ LFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVR+AGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTD+RFT QF AGKI+ F+PFSKYPPCYKDVSFW+D VAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGR SKCFRVNYRSMERSLTN+EIDVLQEEVR QM++ALKVELR
Sbjct:    1 MKAMAPILLACCMSGASAAAAADGFMTRCTRAFVWPMA--PKMTSFAARRTFCTRHALISAASTVAEGKALDGRVHTEHPMNNVPVTLSGKIGRDLHRNPSHPLGIIKDRIEGYFKERAATTGVAVECFDNLFPVVPIVNNFDDLLIPPDHVSRSPIDTYYVDDKQVLRTHTSAHQSTMLGKGLEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRIFPGLLESRGSREEGVKEVEKDLKEALEGMVVTLFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRRAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDERFTKQFEAGKITTFAPFSKYPPCYKDVSFWIDKVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRASKCFRVNYRSMERSLTNEEIDVLQEEVRTQMSDALKVELR 439
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: XP_009520740.1 (hypothetical protein PHYSODRAFT_326460 [Phytophthora sojae] >EGZ25452.1 hypothetical protein PHYSODRAFT_326460 [Phytophthora sojae])

HSP 1 Score: 452.2 bits (1162), Expect = 1.800e-123
Identity = 219/360 (60.83%), Postives = 269/360 (74.72%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF +     G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD+ +VLR HTSAH+   + KG+ AFLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFGDVE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRF  QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   52 NVGESIASKIGVNLHRQPNHPLHIIKTKIEGYFDDLHQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDENRVLRAHTSAHEVATMKKGFTAFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKDLFGDVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFISQFKDGQITKFKPYSKYPECFKDVSFWHDD--NFHENNLCEVVRDIAGDMVEQVAVVDEFTHPKTQRKSKCYRITYRHMDRNLTNSEVDEIQEVVRARMVKDLGVELR 408
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETK86946.1 (phenylalanine-tRNA ligase [Phytophthora parasitica] >ETL40361.1 phenylalanine-tRNA ligase [Phytophthora parasitica])

HSP 1 Score: 452.2 bits (1162), Expect = 1.800e-123
Identity = 219/360 (60.83%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFGDVE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   43 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLYQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGDVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 399
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETM46774.1 (phenylalanine-tRNA ligase [Phytophthora parasitica])

HSP 1 Score: 452.2 bits (1162), Expect = 1.800e-123
Identity = 219/360 (60.83%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFGDVE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   43 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLYQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGDVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 399
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETP44867.1 (phenylalanine-tRNA ligase [Phytophthora parasitica P10297])

HSP 1 Score: 452.2 bits (1162), Expect = 1.800e-123
Identity = 219/360 (60.83%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFGDVE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   43 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLHQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGDVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 399
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETL93512.1 (phenylalanine-tRNA ligase [Phytophthora parasitica])

HSP 1 Score: 450.7 bits (1158), Expect = 5.300e-123
Identity = 218/360 (60.56%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFG+VE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   43 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLHQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGNVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENIGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 399
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETI47018.1 (phenylalanine-tRNA ligase [Phytophthora parasitica P1569])

HSP 1 Score: 450.3 bits (1157), Expect = 7.000e-123
Identity = 218/360 (60.56%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFG+VE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   43 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLYQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGNVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 399
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: XP_008905468.1 (phenylalanine-tRNA ligase [Phytophthora parasitica INRA-310] >ETN08907.1 phenylalanine-tRNA ligase [Phytophthora parasitica INRA-310])

HSP 1 Score: 450.3 bits (1157), Expect = 7.000e-123
Identity = 218/360 (60.56%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFG+VE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   43 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLHQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGNVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 399
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETO75742.1 (phenylalanine-tRNA ligase [Phytophthora parasitica P1976])

HSP 1 Score: 450.3 bits (1157), Expect = 7.000e-123
Identity = 218/360 (60.56%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFG+VE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   49 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLHQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGNVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 405
[Close]
BLAST of NO04G03520 vs. NCBI_GenBank
Match: ETP16810.1 (phenylalanine-tRNA ligase [Phytophthora parasitica CJ01A1])

HSP 1 Score: 450.3 bits (1157), Expect = 7.000e-123
Identity = 218/360 (60.56%), Postives = 268/360 (74.44%), Query Frame = 0 
Query:   83 NVPVALSEKIGRELHRNPSHPLGIIKDRIEGYFRERAATTGV-AVEIVDNFFPVVSIVNNFDDLLIPPDHVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEIDRTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFGDVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGETLGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKYPPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGRGSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR 442
            NV  +++ KIG  LHR P+HPL IIK +IEGYF       G     + D+  PVV+  + FD +L+P DHVSR   DTYYVD  +VLR HTSAH+   + KG+ +FLV+GDVYRRDEID +HYPVFHQMEGVR+F   L+ +  REE V  V+++LK  LEGM   LFG+VE RWV+ YFPFT+PS ELEI++N +WLEVLGCGV+QQEIVR AG GE +GWAFGLGLERLAMVLF IPDIRLFWS DKRFT QF  G+I+KF P+SKYP C+KDVSFW D    F+ N+  E+VR + GD+VE V +VDEF HPKT R SKC+R+ YR M+R+LTN E+D +QE VR +M + L VELR
Sbjct:   35 NVGESIAAKIGVSLHRQPNHPLHIIKTKIEGYFDNLYQNHGAPKFTVFDDLDPVVTTYDCFDSMLVPKDHVSRKVTDTYYVDQNRVLRAHTSAHEVATMKKGFTSFLVSGDVYRRDEIDASHYPVFHQMEGVRIF-SELDAATPREEKVAHVKEELKKTLEGMAKELFGNVEMRWVEAYFPFTEPSLELEIYFNGDWLEVLGCGVLQQEIVRNAGLGENVGWAFGLGLERLAMVLFDIPDIRLFWSQDKRFTSQFKDGEITKFKPYSKYPECFKDVSFWHDDT--FHENNLCEVVRDIAGDMVEQVAIVDEFTHPKTQRTSKCYRITYRHMDRNLTNSEVDEIQEIVRAKMVKELGVELR 391
The following BLAST results are available for this feature:
BLAST of NO04G03520 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
2004006008001000120014001600Expect = 3.30e-213 / Id = 84.35Expect = 1.80e-123 / Id = 60.83Expect = 1.80e-123 / Id = 60.83Expect = 1.80e-123 / Id = 60.83Expect = 1.80e-123 / Id = 60.83Expect = 5.30e-123 / Id = 60.56Expect = 7.00e-123 / Id = 60.56Expect = 7.00e-123 / Id = 60.56Expect = 7.00e-123 / Id = 60.56Expect = 7.00e-123 / Id = 60.56SequenceEWM28680.1XP_009520740.1ETK86946.1ETM46774.1ETP44867.1ETL93512.1ETI47018.1XP_008905468.1ETO75742.1ETP16810.1
Match NameE-valueIdentityDescription
EWM28680.13.300e-21384.35phenylalanyl-trna synthetase [Nannochloropsis gadi... [more]
XP_009520740.11.800e-12360.83hypothetical protein PHYSODRAFT_326460 [Phytophtho... [more]
ETK86946.11.800e-12360.83phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
ETM46774.11.800e-12360.83phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
ETP44867.11.800e-12360.83phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
ETL93512.15.300e-12360.56phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
ETI47018.17.000e-12360.56phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
XP_008905468.17.000e-12360.56phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
ETO75742.17.000e-12360.56phenylalanine-tRNA ligase [Phytophthora parasitica... [more]
ETP16810.17.000e-12360.56phenylalanine-tRNA ligase [Phytophthora parasitica... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009498NSK009498Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03520.1NO04G03520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|538269gene_2129Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g38gene1891Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03520.1NO04G03520.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03520 ID=NO04G03520|Name=NO04G03520|organism=Nannochloropsis oceanica|type=gene|length=1714bp
AAACACTCATAGTCACTTTTCTCTCCACAAGACGCTGCCAGAAGAGGGTC
CAAGCTTTTGGGATTCCTCTCTTATCCTTTGCCTGTTGTGCCTTTCGAGT
CTCTCGCTAGCTGGATCGGAGCTCCGCCGCCACCTCTACCGCCTAACCTC
ACCACCTACGCATCCCCGTCATCAGGCAAATGAAGGCCATGGCCCCAATA
CTTCTTGCCTGTTACATGTCTGGAGCTGGCGCAGTTGCTGCCGCTGGTGG
CATGACGGCACGATACACCCGTGTATTTGTCCGGCCGCTGGGGTCCAACC
CCGCTGCTGCCACACGCCGTGCTGCTTCACATCAGCAAACCCGGCACATG
ATGATGGCGTCTGCCTCCTCCGTGGCTGAAGGCAAGCAGCTGGACGCTCG
TGTACATACGGGCCACCACAAGAACAACGTGCCGGTGGCACTGTCGGAGA
AGATTGGCCGGGAGCTGCATCGCAACCCCAGCCATCCGCTGGGAATCATC
AAGGACCGAATCGAAGGCTACTTCCGCGAGCGGGCGGCCACCACAGGCGT
GGCCGTGGAGATTGTAGACAACTTTTTCCCCGTCGTCTCGATTGTGAATA
ATTTCGATGATTTGTTGATTCCGCCTGATCATGTTTCGAGGTCGCCTATT
GATACTTACTACGTGGATGACCAACAGGTGTTGCGGACGCATACAAGCGC
GCATCAGAGCACTATGTTGGGAAAGGGATATGAAGCGTTCTTGGTGACTG
GTGATGTGTATCGACGGGATGAGATCGATCGGACGCATTATCCCGTTTTT
CATCAGATGGAGGGAGTACGTGTCTTCCCGGGATTGTTGGAAAAAAGTGG
GAGTAGGGAGGAGGGGGTCAAAATGGTGGAGAAGGATTTGAAGGACGCCC
TTGAAGGGATGGTGATGGCTTTGTTCGGAGATGTGGAAAGGCGGTGGGTG
GATACTTACTTTCCGTTCACGGACCCGTCATTCGAGTTGGAGATATTTTA
CAATGACGAGTGGTTGGAGGTTTTAGGGTGCGGGGTGATGCAACAAGAAA
TTGTGCGGAAGGCGGGGAAGGGGGAAACGCTTGGATGGGCCTTTGGCCTG
GGTTTAGAGAGATTGGCGATGGTTTTGTTCCAGATTCCGGATATTCGTTT
GTTTTGGTCCACGGATAAGAGGTTTACGGATCAGTTCTCCGCTGGGAAGA
TTAGCAAGTTCTCGCCGTTTTCGAAGTACCCGCCTTGTTATAAAGACGTG
TCGTTTTGGGTGGACCCGGTGGCGGGATTCAATAATAATGACTTTTTCGA
GATTGTTAGGGGGGTGGGGGGGGATTTGGTGGAGAGTGTAGTGTTGGTGG
ATGAGTTTGTGCATCCTAAGACAGGGAGGGGGAGCAAGTGCTTCCGGGTC
AATTATCGGAGTATGGAGCGGAGTTTGACGAATGATGAGATTGATGTGTT
GCAGGAGGAAGTTAGGAAGCAAATGGCGGAGGCGTTGAAAGTGGAGTTGC
GCTAGAGGAGAGTGGGGGATGTGGGGGTGAGAAAATAAATTCGGGTGTGA
GGTAGCATCAGCTCGAGGGCTTGTCTGGCTTAGTACGGGGTCTTATCATT
TAAGATCAACCAAAGTATGTGTGTACCTGCGCGAGGGAGGATATCGTGAT
TGCAGATACACGATAGTTAAGGGGAAATAAAGTGAAGAAGCACAAGCACA
TGGCACACACTGTA
back to top

protein sequence of NO04G03520.1

>NO04G03520.1-protein ID=NO04G03520.1-protein|Name=NO04G03520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MKAMAPILLACYMSGAGAVAAAGGMTARYTRVFVRPLGSNPAAATRRAAS
HQQTRHMMMASASSVAEGKQLDARVHTGHHKNNVPVALSEKIGRELHRNP
SHPLGIIKDRIEGYFRERAATTGVAVEIVDNFFPVVSIVNNFDDLLIPPD
HVSRSPIDTYYVDDQQVLRTHTSAHQSTMLGKGYEAFLVTGDVYRRDEID
RTHYPVFHQMEGVRVFPGLLEKSGSREEGVKMVEKDLKDALEGMVMALFG
DVERRWVDTYFPFTDPSFELEIFYNDEWLEVLGCGVMQQEIVRKAGKGET
LGWAFGLGLERLAMVLFQIPDIRLFWSTDKRFTDQFSAGKISKFSPFSKY
PPCYKDVSFWVDPVAGFNNNDFFEIVRGVGGDLVESVVLVDEFVHPKTGR
GSKCFRVNYRSMERSLTNDEIDVLQEEVRKQMAEALKVELR*
back to top
Synonyms
Publications