NO04G03430, NO04G03430 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G03430
Unique Name	NO04G03430
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1338
Alignment location	chr4:942589..943926 +

Link to JBrowse

Properties


Property Name	Value
Description	Lysocardiolipin acyltransferase 1

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:942589..943926 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR032098	Acyltransf_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0016746	transferase activity, transferring acyl groups
GO:0016740	transferase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0016020	membrane

Homology

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: BAW99690.1 (lysophosphatidate acyltransferase 2 [Nannochloropsis sp. NIES-2145])

HSP 1 Score: 415.6 bits (1067), Expect = 1.200e-112
Identity = 273/445 (61.35%), Postives = 273/445 (61.35%), Query Frame = 0

Query:    1 MSGPADARGPARVSDTIIGAPDRHHVGLTILVALLLSAFCFCEFFMLPVAMALLPVP-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAFXXXXXXXXXXXXXXXXXXXXXXXXXPFSNSGAPLGFPSFSSPSTSVASSYNEPVYVHNAHWTYGKGLLGTGIAMALVLMLACCLPAVAFCGYSIVVFLLFVTVNSVWEGFDTLELNLAVWWGGQAGQTKQE 277
            MSGPADARGPARVSDTIIGAPDRHHVGLTILVALLLSAFCFCEFFMLPVAMALLPVP                                                                                                                                                                         GAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTA XXXXXXXXXXXXXXXXXXXXXXXXX FSNS APLGFPSFSSPSTSVASSYNEPVYVHNAHWTYGKGLLGTGIAMALVLMLACCLPAVAFCGYSIVVFLLFVTVNSVWEGFDTLELNLAVWWGGQAGQTKQE
Sbjct:    1 MSGPADARGPARVSDTIIGAPDRHHVGLTILVALLLSAFCFCEFFMLPVAMALLPVPGTTSRKLLRRWEGLVAKTWLSFGGWLLENVGGVKLILTGDSILPGDRVLILSNHRTRIDWMFLWCWAARFDLLSSYRVILKSSLRTFPWWGWGMSLCLFPFIHRGSNNRDADLTRIEHICQYLSELGVPNSLILFPEGTDLSQSNQKRDRDYALAKNLPIYHNVLHPRSGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAXXXXXXXXXXXXXXXXXXXXXXXXXXXFSNSSAPLGFPSFSSPSTSVASSYNEPVYVHNAHWTYGKGLLGTGIAMALVLMLACCLPAVAFCGYSIVVFLLFVTVNSVWEGFDTLELNLAVWWGGQAGQTKQE 445

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: EWM28715.1 (lysocardiolipin acyltransferase 1 [Nannochloropsis gaditana])

HSP 1 Score: 145.2 bits (365), Expect = 3.000e-31
Identity = 93/217 (42.86%), Postives = 121/217 (55.76%), Query Frame = 0

Query:   53 LLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF--XXXXXXXXXXXXXXXXXXXXXXXXXPFSNSGAPLGFPSFSSPSTSVASSYNEPVYVHNAHWTYGKGLLGTGIAMALVLMLACCLPAVAFCGYSIVVFLLFVTVNSVWEGFDTLELNLAVWWG 268
            L P  GAF+  L  +RPH+DAV+DLTIGYVDY PGERPSE+SLL GRLP E+H+N+KRWD+  TPLL  +  + A++FL+ SFDRKEALLT+F                           P S   AP    S      ++A+  ++  Y         KGL+    A+  V+++A  LP V F GY +   LL + V    EGFD+LELNL V  G
Sbjct:  212 LHPRTGAFLTCLEILRPHVDAVIDLTIGYVDYEPGERPSEISLLLGRLPREIHVNLKRWDLVLTPLLCRDNIEDAKKFLQLSFDRKEALLTSFYNRGKLRFDLDAVGSTSSRSSSETSPDPISQLNAP---RSGYGDDDALANERSQSRYQR----LLRKGLVVAVAAVTTVVLMAYVLPTVFFWGYIVATCLLCILVTVSCEGFDSLELNLPVRGG 421

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: XP_024578864.1 (lysocardiolipin acyltransferase [Plasmopara halstedii] >CEG42495.1 lysocardiolipin acyltransferase [Plasmopara halstedii])

HSP 1 Score: 71.2 bits (173), Expect = 5.500e-9
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 0

Query:   46 MLPVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            +LP   +L P    +      +   L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI    +LR+N       +L   F+RKE+LL AF
Sbjct:  201 LLPRQFSLYPRTTGWTFMFPLLSSQLTAVYDITMFYVDYALNERPSEASLLSGRMPRMIHFYIERVDIS---VLRDNSESEMATWLENRFERKESLLKAF 297

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETI54757.1 (hypothetical protein F443_02487 [Phytophthora parasitica P1569])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:  203 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 297

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETI54758.1 (hypothetical protein, variant 1 [Phytophthora parasitica P1569])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:  145 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 239

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETI54759.1 (hypothetical protein, variant 2 [Phytophthora parasitica P1569] >ETI54760.1 hypothetical protein, variant 3 [Phytophthora parasitica P1569])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:   97 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 191

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETK82673.1 (hypothetical protein L915_11988 [Phytophthora parasitica] >ETO71270.1 hypothetical protein F444_12372 [Phytophthora parasitica P1976])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:  203 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 297

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETK82674.1 (hypothetical protein, variant 1 [Phytophthora parasitica] >ETO71271.1 hypothetical protein, variant 1 [Phytophthora parasitica P1976])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:  145 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 239

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETK82675.1 (hypothetical protein, variant 2 [Phytophthora parasitica] >ETK82676.1 hypothetical protein, variant 3 [Phytophthora parasitica] >ETO71272.1 hypothetical protein, variant 2 [Phytophthora parasitica P1976] >ETO71273.1 hypothetical protein, variant 3 [Phytophthora parasitica P1976])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:   97 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 191

[Close]

BLAST of NO04G03430 vs. NCBI_GenBank
Match: ETL47999.1 (hypothetical protein L916_02339 [Phytophthora parasitica] >ETP12376.1 hypothetical protein F441_12246 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 70.5 bits (171), Expect = 9.400e-9
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0

Query:   48 PVAMALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRLPHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAF 146
            P   +L P    +      +R  L AV D+T+ YVDY   ERPSE SLL GR+P  +H  ++R DI     LR+        +L + F+RKEALL AF
Sbjct:  203 PRRYSLYPRTTGWTFMFPLLRSQLTAVYDITMFYVDYAANERPSEASLLTGRMPRMIHFYIERVDISA---LRDKSESELATWLEKRFERKEALLKAF 297

The following BLAST results are available for this feature:

BLAST of NO04G03430 vs. NCBI_GenBank

BLAST of NO04G03430 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
BAW99690.1	1.200e-112	61.35	lysophosphatidate acyltransferase 2 [Nannochlorops...	[more]
EWM28715.1	3.000e-31	42.86	lysocardiolipin acyltransferase 1 [Nannochloropsis...	[more]
XP_024578864.1	5.500e-9	40.00	lysocardiolipin acyltransferase [Plasmopara halste...	[more]
ETI54757.1	9.400e-9	40.82	hypothetical protein F443_02487 [Phytophthora para...	[more]
ETI54758.1	9.400e-9	40.82	hypothetical protein, variant 1 [Phytophthora para...	[more]
ETI54759.1	9.400e-9	40.82	hypothetical protein, variant 2 [Phytophthora para...	[more]
ETK82673.1	9.400e-9	40.82	hypothetical protein L915_11988 [Phytophthora para...	[more]
ETK82674.1	9.400e-9	40.82	hypothetical protein, variant 1 [Phytophthora para...	[more]
ETK82675.1	9.400e-9	40.82	hypothetical protein, variant 2 [Phytophthora para...	[more]
ETL47999.1	9.400e-9	40.82	hypothetical protein L916_02339 [Phytophthora para...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL076	nonsL076	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR058	ncniR058	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR106	ngnoR106	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009488	NSK009488	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G03430.1	NO04G03430.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|579165	gene_2119	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100002g46	gene1883	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G03430.1	NO04G03430.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G03430 ID=NO04G03430|Name=NO04G03430|organism=Nannochloropsis oceanica|type=gene|length=1338bp
ATGTCTGGTCCAGCCGATGCCAGGGGCCCTGCCCGAGTCTCCGATACCAT
TATTGGTGCGCCCGACCGCCACCATGTCGGTCTGACCATCCTCGTCGCCC
TTCTCCTGAGCGCCTTTTGCTTTTGCGAATTCTTCATGCTGCCCGTGGCG
ATGGCGTTACTGCCCGTGCCAGgtacaacatccaggaagttgctgcggcg
ctgggagggcttggtagccaaaacttggctgtcctttggagggtggctcc
tggaaaatgtgggtggggtcaagctcattcttacgggcgactcgatactc
cccggtgatcgtgtgctgattctcagcaatcataggacgagaattgattg
gatgtttctatggtgctgggctgcacgtttcgacctgctgtcctcgtacc
gagtcattctcaagtcgtctttacgcactttcccctggtggggctggggg
atgagtttatgtttgtttcctttcatccaccgaggaagcaacaatcgcga
cgcggatttgacccgtattgaacatatttgtcagtatttaagcgagctgg
gtgtgccaaactccctcattctcttcccagaaggaactgacctttcccaa
tctaaccaaaaacgcgatcgtgattatgctctagccaaaaacctacccat
ttaccataacgtgcttcacccacgttcagGCGCCTTTATTGCTAGCTTGA
CGGCCATGCGTCCTCATTTGGATGCTGTTGTGGATCTTACTATCGGCTAT
GTCGATTACACACCAGGGGAAAGACCTTCCGAGCTCTCTCTTCTCAAGGG
CCGGCTACCGCACGAGGTCCACATAAATATGAAACGATGGGACATAAAGA
CGACTCCCTTACTTCGAGAGAACCCATCGGACCGGGCGGAACAATTTTTG
CGCGAATCTTTTGATCGGAAAGAGGCATTGCTGACAGCCTTCTACAGCAA
CAACACGGACACTTCAGGTGGTGGGCTCAAGCAAACGTCATCATTGCTCG
TATCCTCTTCCTCTTCACCTTTCTCCAATAGCGGTGCACCTTTAGGATTT
CCTTCCTTCTCCTCCCCCTCCACCTCCGTCGCCTCTTCTTACAACGAGCC
AGTGTATGTACACAATGCTCACTGGACATACGGCAAAGGGCTTTTGGGGA
CGGGGATTGCCATGGCGTTGGTGCTGATGTTAGCGTGCTGCTTGCCTGCT
GTTGCGTTTTGCGGGTATAGTATCGTTGTCTTTTTGTTGTTCGTGACAGT
GAATTCGGTGTGGGAGGGCTTCGATACCTTGGAATTGAATTTGGCTGTGT
GGTGGGGCGGGCAGGCAGGGCAAACGAAGCAAGAGTGA

protein sequence of NO04G03430.1

>NO04G03430.1-protein ID=NO04G03430.1-protein|Name=NO04G03430.1|organism=Nannochloropsis oceanica|type=polypeptide|length=277bp
MSGPADARGPARVSDTIIGAPDRHHVGLTILVALLLSAFCFCEFFMLPVA
MALLPVPGAFIASLTAMRPHLDAVVDLTIGYVDYTPGERPSELSLLKGRL
PHEVHINMKRWDIKTTPLLRENPSDRAEQFLRESFDRKEALLTAFYSNNT
DTSGGGLKQTSSLLVSSSSSPFSNSGAPLGFPSFSSPSTSVASSYNEPVY
VHNAHWTYGKGLLGTGIAMALVLMLACCLPAVAFCGYSIVVFLLFVTVNS
VWEGFDTLELNLAVWWGGQAGQTKQE*

Synonyms

Publications