NO04G03300, NO04G03300 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03300 vs. NCBI_GenBank
Match: EWM28746.1 (dna topoisomerase 6 subunit b [Nannochloropsis gaditana]) HSP 1 Score: 881.3 bits (2276), Expect = 1.600e-252 Identity = 445/550 (80.91%), Postives = 481/550 (87.45%), Query Frame = 0 Query: 26 MAPKNKAEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDK--HDNDLKPDEKQLQVSAPVALPPKKKERGT-SYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVTQYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 MA KN+ EVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESI+ LP VS+ IEE+TE+ELNELRGMESRERVD+GLFHKA+ K H + L EKQ+ ++ KK +RG +YYRVTCEDNGCGMAH++IPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHS E + Y+S C+LDIDIYRN+P VKLHEKVAN + WRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYA M+FTFR LSNA+REV+TQYARRSE MP PAQEVKHHPSS+NHLIIQQL+KRT K+ L FL ELACV RPLA RIVKELG+GF E+M P+ +DANKTIRLTSMLKS+SIFK PDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPF+VEAGVSLGG A+KDGINVYRFANRIPLLFEAGNDVVTQVANRRI+WQSYKIDPKRDR+GVFVSIVSTKIPFKGTGKEYIGDDTE IRK VK+ALQRCCKQLKQHLLTRNAAR Sbjct: 1 MARKNRIEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIQELPYVSVVIEEITEDELNELRGMESRERVDLGLFHKATGKRRSGGEIQEVLAENMKELHSDAL---EKQMGQNSAALSNKKKGDRGARNYYRVTCEDNGCGMAHEKIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSLEENHPAAYISHCVLDIDIYRNQPFVKLHEKVANIKGWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAHMEFTFRTLSNASREVITQYARRSEHMPPPAQEVKHHPSSINHLIIQQLIKRTSTKTFLNFLCTELACVTRPLAARIVKELGNGFAENMVPEDIDANKTIRLTSMLKSISIFKLPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFVVEAGVSLGGNALKDGINVYRFANRIPLLFEAGNDVVTQVANRRINWQSYKIDPKRDRIGVFVSIVSTKIPFKGTGKEYIGDDTEAIRKSVKSALQRCCKQLKQHLLTRNAAR 547
BLAST of NO04G03300 vs. NCBI_GenBank
Match: OEU16885.1 (topo-VIb_trans-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 574.3 bits (1479), Expect = 4.200e-160 Identity = 296/551 (53.72%), Postives = 394/551 (71.51%), Query Frame = 0 Query: 29 KNKAEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLF-------HKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERGTSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVTQYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 + + E+ K+PAEFF+++Q+I GFDN G+SLYT++RELVEN+LDA ESI VLP + + IEEL ++E N++RG+ + DV LF + ++ XXXXXXXXX + +D D KP + P+KK Y+++ +DNGCGM H++IPD+LGRVLS SKYGVRQTRGKFGLG+KMALIWSKKSTG+PI++ +AHS VS C+LDI+I N P + H K N +W GT +++++ GNW+TY++ I++YFQQLAIITPY +++ + S R + ++ RRSEQMP +E+KHHPSSVN++I+ QL++R+ K+++ FL+ EL+CV RPLA RIV E G + + P M + + +L +L++V +FK PDGSCLSP GEYNL LGI K L P++VAT ++ +A+EGHPF+VEA VSLGG+ KDG+NV RFANRIPLLFE G DV T+VAN +I W YKID KRDR+GVFVSIVSTKIP+KGTGKEYIGDD EI VK A+Q CC+QL+ HLL RNA R Sbjct: 12 EGRGEIQRQKSPAEFFADNQAIAGFDNYGKSLYTSIRELVENSLDACESIGVLPTIQVYIEELNQDEFNKIRGISVATK-DVELFQQKGGKGNSSAGAXXXXXXXXXGVNGSGGNDKDSKPTK-----------TPRKKASQEGYFQLKVKDNGCGMNHEKIPDLLGRVLSGSKYGVRQTRGKFGLGAKMALIWSKKSTGVPIKITTAHS---------VSICVLDINITNNCPNIIQHTKSKNTTEWVGTELELLIAGNWTTYRSRIVSYFQQLAIITPYCQLELVYENRSEPQRNMTLRHDRRSEQMPPLPREIKHHPSSVNNIIVSQLIERSNCKTIIDFLTKELSCVTRPLAQRIVTECGWDEDDIVNPSDMTSRQLTKLVQVLRTVKMFKAPDGSCLSPLGEYNLNLGIRKVLEPEFVATARDKPSAYEGHPFLVEAAVSLGGKEAKDGLNVVRFANRIPLLFEGGADVCTRVANNKIKWSLYKIDQKRDRIGVFVSIVSTKIPYKGTGKEYIGDDITEISVSVKKAIQSCCQQLRVHLLKRNALR 541
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_002182945.1 (type II DNA topoisomerase 6 subunit [Phaeodactylum tricornutum CCAP 1055/1] >EEC45681.1 type II DNA topoisomerase 6 subunit [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 571.6 bits (1472), Expect = 2.700e-159 Identity = 290/546 (53.11%), Postives = 382/546 (69.96%), Query Frame = 0 Query: 33 EVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMES--RERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVAL----PPKKKERGTSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVTQYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 EV K+PAEFF+E+Q+I GFDN G+SLYT++RELVEN+LDA ESI LP++SI I+E T+EE N L M++ R++ D+ LF + D KP ++ V + +KK +Y+++T +DNGCGM+H IP++LGRVLS SKYGVRQTRGKFGLG+KMALIW+KKSTG PI + ++H + AP S C+LDIDIY+N P + H N W GT + V++ GNW+TYK+ I+ Y QQLAIITPYA ++ + +S++ R + +Y RRS+QMP PA+ +KHHP+SVN+L+IQQL++ TK ++L FLS EL+ V+ PLA R+V EL GF E M P ++ + RL +L+ V +FK PDGSCLSP GEYNL LGI K L PD +AT ++ A+EGHPF+VEA VSLGG+ VK+GI V RFANRIPLLFE G DV T+VAN +I W +YK+D KRDR+GVFVSIVSTK+PFKGT KEYIGDD EI++ VK ALQ CC+QL+ +L R+A + Sbjct: 15 EVQVQKSPAEFFAENQAIAGFDNLGKSLYTSLRELVENSLDACESIHELPEISIEIKEYTQEEFNALDVMKTSPRKKRDMQLF--------------------ETKKKDKKPPKEATDVDEITTVENSGKKRKKAPQDAYFKLTVKDNGCGMSHSAIPNLLGRVLSGSKYGVRQTRGKFGLGAKMALIWAKKSTGQPIRIMTSHRPDGGVAPERASACVLDIDIYKNAPRILEHTTRKNTDGWMGTEMSVLIAGNWTTYKSRIVQYLQQLAIITPYAVLELAYINISDSKRNLHVRYDRRSDQMPPPAKTIKHHPASVNNLVIQQLIQFTKTRTLFKFLSTELSTVSPPLARRLVTEL--GFDESMPPSSLEDKEITRLVQLLRQVQLFKAPDGSCLSPLGEYNLNLGIRKVLEPDLIATSRDKPGAYEGHPFLVEAAVSLGGKEVKEGITVIRFANRIPLLFEGGADVATRVANTKIRWSNYKMDYKRDRIGVFVSIVSTKVPFKGTSKEYIGDDATEIQQSVKRALQSCCQQLRGYLAKRSALK 538
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_002289341.1 (topoisomerase [Thalassiosira pseudonana CCMP1335] >EED92878.1 topoisomerase [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 570.1 bits (1468), Expect = 7.800e-159 Identity = 289/552 (52.36%), Postives = 379/552 (68.66%), Query Frame = 0 Query: 26 MAPK----NKAEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERGTSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVTQYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSV-SIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 M PK K E+ +SK+PAEFF+E+QSI GFDNPG+SLYTT+RELVEN+LDA ES++VLPD+S+ IEE+T+++ NE+RG+ + D + G +Y+ VT DNGCGMAHD IPD+LGRVLS SKYGVRQTRGKFGLG+KMALIWSKKSTG+PI ++++H + I IDIY+N P + H++ N + W GT + V+V GNW+TYK+ ++ Y QQLAIITPYA+++ ++ S+ + + ++ RRSEQMPS A+EVKHHPSSVN+L++QQLL+ +K+K+LL FL+ +L+ ++ +A R+++ LG F EDM P +MD + RL +L+S +FK PDG CLSP GEYNL LGI K + P+ +AT ++ A++GHPFIVEA VSLGG+ K+GI V RFANRIPLLFE G DV T+VAN +I W SYKID KRD++GVFVSIVSTK+PFKGTGKEYIGDD EI+ VK ALQ CC+QL+ HL RNA R Sbjct: 1 MPPKKSSSKKDEIQQSKSPAEFFAENQSIAGFDNPGKSLYTTLRELVENSLDACESVDVLPDISVVIEEMTQDQFNEMRGVPT--------------SGGPGKKKKGVDGSDDAAVXXXXXXXXXXXXXXXXXXXXXXRAGGDAYFLVTVRDNGCGMAHDAIPDLLGRVLSGSKYGVRQTRGKFGLGAKMALIWSKKSTGVPIRIKTSH-----------VKGIYIIDIYKNCPRIIEHKQKDNTENWIGTEMQVLVSGNWTTYKSRVVQYLQQLAIITPYARLEMSYSNRSDEKKGMNLRFERRSEQMPSQAREVKHHPSSVNNLLVQQLLENSKSKTLLKFLTGDLSGISPSVAKRLIERLGDAFEEDMSPAEMDDKQITRLVQLLRSTDDLFKSPDGGCLSPLGEYNLNLGIQKVVEPEIIATARDKPGAYDGHPFIVEAAVSLGGKEAKEGITVVRFANRIPLLFEGGADVATRVANSKIKWSSYKIDHKRDKIGVFVSIVSTKVPFKGTGKEYIGDDITEIQLSVKRALQNCCQQLRVHLAKRNALR 527
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_020888533.1 (DNA topoisomerase 6 subunit B [Arabidopsis lyrata subsp. lyrata]) HSP 1 Score: 560.5 bits (1443), Expect = 6.200e-156 Identity = 292/548 (53.28%), Postives = 379/548 (69.16%), Query Frame = 0 Query: 28 PKNKAE-VVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERG-TSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVT-QYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 PKN E ++ K+PAEFF+E+++I GFDNPG+SLYTTVRELVENALD+AESI LP+V +TIEE+ + + N + G+ RERVD L+ ++ +L +K + L K RG SYY+VTC+DNG GM HD IP+M GRVLS +KYG++QTRGKFGLG+KMALIWSK STGLPIE+ S + ++ YV+ C LDIDI+RN P + LHEK N ++W G I VV+EGNW+TY++ I+ Y +Q+A+ITPYA+ F FR +S + VT ++ RR++ MP E KHHPSSV+ L+I++L+ T K+LL FL E +N+ LA R++ E+G F M + + + +R+ + + F P G CLSPAGEYNLRLGI+KELHPD VAT S A FEGHPFIVEAGVSLGG+ VK GIN++RFANRIPLLFE G DVVT+ A +RI+W SYKI+ +D++GVFVSIVSTKIPFKGTGKEYIGDD EI VK+A+Q+CC QLK ++ R AR Sbjct: 17 PKNSNESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKAREKRLAKEARASEIQAKNLASGKKNKEPGVSKVL----KARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS-----SMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQ--FLFRFISETPEKNVTIKFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLATRLIGEMGPDFGPSMAVKSVTSQQMVRIHQLFRQAK-FDDPSGDCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGRDVKQGINIFRFANRIPLLFEQGADVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAR 552
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_006297133.1 (DNA topoisomerase 6 subunit B [Capsella rubella] >EOA30031.1 hypothetical protein CARUB_v10013135mg [Capsella rubella]) HSP 1 Score: 560.1 bits (1442), Expect = 8.100e-156 Identity = 287/540 (53.15%), Postives = 377/540 (69.81%), Query Frame = 0 Query: 35 VESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERG-TSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVT-QYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 ++ K+PAEFF+E+++I GFDNPG+SLYTTVRELVENALD+AESI LP+V +TIEE+ + + N + G+ RERVD L+ ++ +L +K + L K RG SYY+VTC+DNG GM HD IP+M GRVLS +KYG++QTRGKFGLG+KMALIWSK STGLPIE+ S + ++ YV+ C LDIDI+RN P + LHEK N ++W G I VV+EGNW+TY++ I+ Y +Q+A+ITPYA+ F FR +S + VT ++ RR++ MP E KHHPSSV+ L+I++L+ T K+LL FL E +N+ LA R++ E+G F+ M + + + +R+ + + F P G CLSPAGEYNLRLGI+KELHPD VAT S A FEGHPFIVEAGVS+GG+ VK GIN++RFANRIPLLFE G DVVT+ A++RI+W SYKI+ +D++GVFVSIVSTKIPFKGTGKEYIGDD EI VK+A+Q+CC QLK ++ R AR Sbjct: 25 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKAREKRLAKEARASEIQAKNLASGKKNKEPGVSKVL----KARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS-----SMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQ--FLFRFISETPEKNVTIKFTRRTDVMPPIPVETKHHPSSVDLLLIKRLVTDTSKKTLLQFLQNEFVNINKTLATRLIGEMGPDFSPSMAVKSVTSQQMVRIHQLFRQAK-FDDPSGGCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGRDVKQGINIFRFANRIPLLFEQGGDVVTRTASKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCIQLKSKIVKRLQAR 552
BLAST of NO04G03300 vs. NCBI_GenBank
Match: CBJ26118.1 (DNA topoisomerase VI subunit B-like protein Topoisomerase 6 subunit B [Ectocarpus siliculosus]) HSP 1 Score: 559.3 bits (1440), Expect = 1.400e-155 Identity = 292/558 (52.33%), Postives = 366/558 (65.59%), Query Frame = 0 Query: 29 KNKAEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDL-KPDEKQLQVSAPVA-LPPKKKE---------RGTS---YYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVTQYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 K E V+SK+PAEFF+++Q+I GFDN G+SLYTT+RELVEN+LDAAESI LP +S+TIEE T VD GLF + + P E A A L PK+K+ +G S YYRV C+DNG GM HD+IPDMLG VLSSSKYGVRQ RGK+G+G+KMALIWSKKSTGLPI+V S S++ P ++++C+LDIDIY+N P+V H K+ NP+ WRGT + V V GNW TYK+ ++ Y QQLAIITPYA+++ + + +N +++ Y RRSEQMP A EVKHHP SVN+L++QQL+ RTK K L+ FL +L+ ++RPL+ RI+ ELG GF M P + RLT ML+ V FKPPDG+CLSPAGEYNLR VK+G+NVYRFANRIPLLFEAG+DVVT+VA +RI+W SYK+D KRD++GVFVS VSTKIPFKGT KEYIGDDTEEI+K VK+ALQ+CC+QL+ HLL RNA R Sbjct: 3 KGSGEAVKSKSPAEFFADNQNIAGFDNAGKSLYTTIRELVENSLDAAESIGALPHISLTIEEFTXXXXXXXXXXXXXXVVDAGLFKASGGKKSTSKATKALPKPAVAEEGSADDPQEPSAAAGATAADLDPKEKKAKNDKKGRSKGDSHSLYYRVKCKDNGVGMPHDKIPDMLGVVLSSSKYGVRQARGKYGMGAKMALIWSKKSTGLPIQVVSGCSSDVKDPPNFLTKCVLDIDIYKNRPSVHEHVKLPNPEGWRGTEMTVCVSGNWQTYKSRVLQYLQQLAIITPYAELELEYHSHANPKKDLTAVYRRRSEQMPPLAYEVKHHPGSVNNLLVQQLIHRTKCKDLVGFLMKDLSSIDRPLSERIIAELGEGFHPKMQPSALTVKMVSRLTQMLRDVKRFKPPDGACLSPAGEYNLR--------------------------------------QVKEGVNVYRFANRIPLLFEAGSDVVTRVAMKRINWSSYKVDHKRDKIGVFVSTVSTKIPFKGTSKEYIGDDTEEIKKAVKHALQQCCQQLRTHLLRRNALR 522
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_010509333.1 (PREDICTED: DNA topoisomerase 6 subunit B-like [Camelina sativa]) HSP 1 Score: 559.3 bits (1440), Expect = 1.400e-155 Identity = 286/540 (52.96%), Postives = 377/540 (69.81%), Query Frame = 0 Query: 35 VESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERG-TSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNA-AREVVTQYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 ++ K+PAEFF+E+++I GFDNPG+SLYTTVRELVENALD+AESI LP+V +TIEE+ + + N + G+ RERVD L+ ++ +L +K + L K RG SYY+VTC+DNG GM HD IP+M GRVLS +KYG++QTRGKFGLG+KMALIWSK STGLPIE+ S + ++ YV+ C LDIDI+RN P + LHEK N ++W G I VV+EGNW+TY++ I+ Y +Q+A+ITPYA+ F FR +S + V+ ++ RR++ MP E KHHPSSV+ L+I++L+ T K+LL FL E +N+ LA R++ E+G F+ M + + + +R+ + + F P G+CLSPAGEYNLRLGI+KELHPD VAT S A FEGHPFIVEAGVS+GG+ VK GIN++RFANRIPLLFE G DVVT+ A +RI+W SYKI+ +D++GVFVSIVSTKIPFKGTGKEYIGDD EI VK+A+Q+CC QLK ++ R AR Sbjct: 26 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKAREKRLAKEARVSEIQAKNLASGKKNKEPGVSKVL----KARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS-----SMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQ--FLFRFISETPEKNVIIKFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTAKKTLLQFLQNEFVNINKTLATRLIGEMGPDFSPSMAVKSVTSQQMVRIHQLFRQAK-FDDPSGNCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGRDVKQGINIFRFANRIPLLFEQGGDVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCVQLKSKIVKRLQAR 553
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_010488064.1 (PREDICTED: DNA topoisomerase 6 subunit B [Camelina sativa]) HSP 1 Score: 558.9 bits (1439), Expect = 1.800e-155 Identity = 287/540 (53.15%), Postives = 377/540 (69.81%), Query Frame = 0 Query: 35 VESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERG-TSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVT-QYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 ++ K+PAEFF+E+++I GFDNPG+SLYTTVRELVENALD+AESI LP+V +TIEE+ + + N + G+ RERVD L+ ++ +L +K + L K RG SYY+VTC+DNG GM HD IP+M GRVLS +KYG++QTRGKFGLG+KMALIWSK STGLPIE+ S + ++ YV+ C LDIDI+RN P + LHEK N ++W G I VV+EGNW+TY++ I+ Y +Q+A+ITPYA+ F FR +S + VT ++ RR++ MP E KHHPSSV+ L+I++L+ T K+LL FL E +N+ LA R++ E+G F+ M + + + +R+ + + F P G+CLSPAGEYNLRLGI+KELHPD VAT S A FEGHPFIVEAGVS+GG+ VK GIN++RFANRIPLLFE G DVVT+ A +RI+W SYKI+ +D++GVFVSIVSTKIPFKGTGKEYIGDD EI VK+A+Q+CC QLK ++ R AR Sbjct: 26 LKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEEIVKSKFNSMIGLIDRERVDTQLYDDYETEKAREKRLAKEARVSEIQAKNLASGKKNKEPGVSKVL----KARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS-----SMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQ--FLFRFISETPEKNVTIKFTRRTDVMPPIPIETKHHPSSVDLLLIKRLITDTAKKTLLQFLQNEFVNINKTLATRLIGEMGPDFSPSMAVKSVTSQQMVRIHQLFRQAK-FDDPSGNCLSPAGEYNLRLGIIKELHPDMVATYSGSAQVFEGHPFIVEAGVSVGGRDVKQGINIFRFANRIPLLFEQGGDVVTRTALKRINWNSYKINQTQDKIGVFVSIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCVQLKSKIVKRLQAR 553
BLAST of NO04G03300 vs. NCBI_GenBank
Match: XP_010544238.1 (PREDICTED: DNA topoisomerase 6 subunit B isoform X1 [Tarenaya hassleriana]) HSP 1 Score: 558.9 bits (1439), Expect = 1.800e-155 Identity = 286/544 (52.57%), Postives = 376/544 (69.12%), Query Frame = 0 Query: 30 NKAEVVESKTPAEFFSEHQSICGFDNPGRSLYTTVRELVENALDAAESIEVLPDVSITIEELTEEELNELRGMESRERVDVGLFHKASXXXXXXXXXXXXXXXTDKHDNDLKPDEKQLQVSAPVALPPKKKERGTSYYRVTCEDNGCGMAHDRIPDMLGRVLSSSKYGVRQTRGKFGLGSKMALIWSKKSTGLPIEVRSAHSTETSRAPGYVSRCILDIDIYRNEPAVKLHEKVANPQQWRGTRIDVVVEGNWSTYKTHIMTYFQQLAIITPYAKMDFTFRALSNAAREVVT-QYARRSEQMPSPAQEVKHHPSSVNHLIIQQLLKRTKAKSLLVFLSAELACVNRPLALRIVKELGSGFTEDMGPDKMDANKTIRLTSMLKSVSIFKPPDGSCLSPAGEYNLRLGIMKELHPDYVATVSEQAAAFEGHPFIVEAGVSLGGQAVKDGINVYRFANRIPLLFEAGNDVVTQVANRRIHWQSYKIDPKRDRVGVFVSIVSTKIPFKGTGKEYIGDDTEEIRKCVKNALQRCCKQLKQHLLTRNAAR 573 +K ++ K+PAEFF+E+++I GFDNPG+SLYTTVRELVENALD+AESI LP+V ITIEE+ + + N + G+ RERVD L+ + + +K V P K SYY+VTC+DNG GM HD IP+M GRVLS +KYG++QTRGKFGLG+KMALIWSK STGLPIE+ S + + YV+ C LDIDI+RN P V LHEK N ++W G I VV+EGNW+TY++ I+ Y +Q+A+ITPYA+ F FR +S+ + +T ++ARR++ MP E KHHPSSV+ L+I++L+ T K+LL FL E +N+ LA R++ E+G F+ +M + + + +R+ + + F P G CLSPAGEYNLRLG++KELHPD VAT S A FEGHPFIVEAGVSLGG+ VK GIN++RFANRIPLLFE G DVVT+ A +RI+W +YKI+ +D++GVF+SIVSTKIPFKGTGKEYIGDD EI VK+A+Q+CC QLK ++ R AR Sbjct: 21 SKDSNLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISQLPEVEITIEEIGKSKFNSMIGLVDRERVDEKLYDDYETVKAREKRLAKEARAQEIQAKNAASGKK---VKEPAVSKVLKGRGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALIWSKMSTGLPIEISS-----SMKGQSYVTFCRLDIDIHRNIPHVHLHEKKGNTERWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQ--FLFRFISDTPEKNITIKFARRTDVMPPVPVETKHHPSSVDLLLIKRLIADTSKKTLLQFLQNEFVNINKSLAARLIGEMGPDFSPNMAVKSLTSQQMVRIHQLFRQAK-FDDPSGDCLSPAGEYNLRLGVIKELHPDMVATYSGSAQVFEGHPFIVEAGVSLGGKDVKQGINIFRFANRIPLLFEQGGDVVTRTALKRINWSTYKINQTQDKIGVFISIVSTKIPFKGTGKEYIGDDISEIATAVKSAIQQCCNQLKSKIVKRIQAR 553 The following BLAST results are available for this feature:
BLAST of NO04G03300 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following gene feature(s) are orthologous to this gene:
The following polypeptide feature(s) derives from this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03300 ID=NO04G03300|Name=NO04G03300|organism=Nannochloropsis oceanica|type=gene|length=5585bpback to top protein sequence of NO04G03300.3 >NO04G03300.3-protein ID=NO04G03300.3-protein|Name=NO04G03300.3|organism=Nannochloropsis oceanica|type=polypeptide|length=573bpback to top protein sequence of NO04G03300.2 >NO04G03300.2-protein ID=NO04G03300.2-protein|Name=NO04G03300.2|organism=Nannochloropsis oceanica|type=polypeptide|length=573bpback to top protein sequence of NO04G03300.1 >NO04G03300.1-protein ID=NO04G03300.1-protein|Name=NO04G03300.1|organism=Nannochloropsis oceanica|type=polypeptide|length=739bpback to top Synonyms
Publications
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