NO04G03250, NO04G03250 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_005855880.1 (pseudouridine synthase 1-like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20473.1 pseudouridine synthase 1-like protein, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 384.8 bits (987), Expect = 2.800e-103 Identity = 195/288 (67.71%), Postives = 226/288 (78.47%), Query Frame = 0 Query: 45 FCPPYLLSLRSSSISAAPGPDKQAVRRRTPRYAAKGDGTTTNAAIERPLLDMNGFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGTKVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEPRPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKDCLPEETWKTDAEAIV 333 FCP L S+S ++ R R G T E P L+MNG VA++KP++W+SNDVVQKVR +LEKEAR+RAG KVKVKVGHGGTLDPMATGVLVLGVG C+DL+ YLKGSKAYRAVGLLGSEYDTMD+TG ITETVDV+HVTP++LE AL +FRG IMQRPP +SALR+ GKRLYELAR+GE VE EPR VQV+ L+L+ AE+E G + WP+FGL IECQGGTYVRSLISD+AR+V+ARAHMTAL RTK GPF L DCLPEE WK DAEA+V Sbjct: 54 FCPANLKVSNFRSLSPTTSCKERKYLARYERMCTV-RGATPGTTAELPPLNMNGLVAIFKPRNWTSNDVVQKVRSLLEKEARRRAGVKVKVKVGHGGTLDPMATGVLVLGVGRGCQDLNLYLKGSKAYRAVGLLGSEYDTMDATGTITETVDVSHVTPDSLEEALVSFRGCIMQRPPVYSALRRKGKRLYELARQGEDVETEPRAVQVDRLDLIHAEDETGHKLEWPYFGLAIECQGGTYVRSLISDVARSVNARAHMTALTRTKHGPFSLDDCLPEEVWKNDAEAVV 340
BLAST of NO04G03250 vs. NCBI_GenBank
Match: EWM28783.1 (putative trna pseudouridine synthase 1 [Nannochloropsis gaditana]) HSP 1 Score: 383.3 bits (983), Expect = 8.000e-103 Identity = 195/292 (66.78%), Postives = 227/292 (77.74%), Query Frame = 0 Query: 45 FCPPYLLSLRSSSISAAPGPDKQAVRRRTPRYAAKGDGTTTNAAIERPLLDMNGFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGTKVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEPRPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKDCLPEETWKTDAEAIVLQLV 337 FCP L S+S ++ R R G T E P L+MNG VA++KP++W+SNDVVQKVR +LEKEAR+RAG KVKVKVGHGGTLDPMATGVLVLGVG C+DL+ YLKGSKAYRAVGLLGSEYDTMD+TG ITETVDV+HVTP++LE AL +FRG IMQRPP +SALR+ GKRLYELAR+GE VE EPR VQV+ L+L+ AE+E G + WP+FGL IECQGGTYVRSLISD+AR+V+ARAHMTAL RTK GP L DCLPEE WK DAEA+V L+ Sbjct: 49 FCPANLKVPNFRSLSPTRSCKERKYLARYERMCTV-RGATPGTTAELPPLNMNGLVAIFKPRNWTSNDVVQKVRSLLEKEARRRAGVKVKVKVGHGGTLDPMATGVLVLGVGRGCQDLNLYLKGSKAYRAVGLLGSEYDTMDATGTITETVDVSHVTPDSLEEALVSFRGCIMQRPPVYSALRRKGKRLYELARQGEDVETEPRAVQVDRLDLIHAEDETGHRLEWPYFGLAIECQGGTYVRSLISDVARSVNARAHMTALTRTKHGPLSLDDCLPEEVWKNDAEAVVQHLI 339
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_009041799.1 (hypothetical protein AURANDRAFT_5154, partial [Aureococcus anophagefferens] >EGB03470.1 hypothetical protein AURANDRAFT_5154, partial [Aureococcus anophagefferens]) HSP 1 Score: 246.5 bits (628), Expect = 1.200e-61 Identity = 134/236 (56.78%), Postives = 159/236 (67.37%), Query Frame = 0 Query: 98 GFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGTKVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEPRPVQVNLLNLVPAEEEAGKV---MPWPHFGLEIECQGGTYVRSLISDLAR--TVDARAHMTALVRTKQGPFFLKDCLPEETWKTDA 329 G AVYKP WSS +VV K+RGVLE+ + K KVKVGHGGTLDP+A GVLV+GVG CR++ YLKG+K YRAV LG E DT+D+ G + E HVT + LEAAL AF G+I Q PP +SAL GKRLYELAR+G VE E RPV ++ L L + G V + PHFGL++EC GGTY+R+LISDLAR V + AHM L RTKQGPF L DCL E W DA Sbjct: 1 GVCAVYKPPGWSSANVVAKLRGVLERAIKIPGQKKFKVKVGHGGTLDPLARGVLVVGVGRGCREMQGYLKGAKRYRAVAELGKETDTLDAEGAVVEEAPFDHVTLDALEAALPAFTGDIRQTPPMYSALHHEGKRLYELAREGIEVERESRPVTISRLAL--DDRGVGAVAGPLGLPHFGLDVECSGGTYIRTLISDLARHEAVKSVAHMVELERTKQGPFELGDCLHEADWDFDA 234
BLAST of NO04G03250 vs. NCBI_GenBank
Match: GAX21360.1 (tRNA pseudouridine55 synthase [Fistulifera solaris]) HSP 1 Score: 207.6 bits (527), Expect = 6.000e-50 Identity = 117/260 (45.00%), Postives = 153/260 (58.85%), Query Frame = 0 Query: 73 TPRYAAKGDGTTTNAAIERPLL-DMNGFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAG----TKVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEPRPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKDCLPEETWKTD 328 TP T + + PLL G AV+KP +W+S++VV +RG+LE++AR R + ++K+GHGGTLDP+ATGVLVLGVG + L YL GSKAYRA LG E +T+D G IT H+ P LE F G I Q PP FSA+++NG+RLY+ ARKG+ + V LV E + P F +++EC GGTY+RSLI D+A +D A T L RTKQGPF L+DCL +E W D Sbjct: 3 TPTTTVWQSSTAAASDDDVPLLYRAEGLFAVHKPLNWTSSNVVSYIRGILERDARTRGAKLPRRRPRIKIGHGGTLDPLATGVLVLGVGKGTKQLESYLSGSKAYRAGAALGFETNTLDMEGNITRRATFDHIQPIDLERVRPHFVGTIEQIPPLFSAIKQNGQRLYQKARKGQTDDD-----VVIASRLVTIHELQFGNVDLPQFDIQVECGGGTYIRSLIRDIAYQLDTVATTTYLQRTKQGPFTLEDCLEKEDWNAD 257
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_005780927.1 (tRNA pseudouridine synthase, partial [Emiliania huxleyi CCMP1516] >EOD28498.1 tRNA pseudouridine synthase, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 203.8 bits (517), Expect = 8.700e-49 Identity = 110/219 (50.23%), Postives = 142/219 (64.84%), Query Frame = 0 Query: 98 GFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGT---KVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVE--AEPRPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQG 312 G V YKP +W+S DVV K RG LE + ++ T + ++KVGHGGTLDP+A G+LVLG+GT C+ L YLKG KAYRA LG+E DT DS+G IT + HVT L A G+I+QRPP +SAL++ GK L+ELAR G++ E EPR V V+ L + + E+G F L ++C GGTYVR+LI DL R V + AHMT LVRT+ G Sbjct: 1 GIVVAYKPTNWTSFDVVAKARGCLEADLKKAGHTFRRRSRLKVGHGGTLDPLAEGLLVLGIGTGCKGLEGYLKGGKAYRATARLGTETDTQDSSGAITRSEPAEHVTLAALRDAAAGLTGSILQRPPIYSALKRGGKPLHELARAGKIEEGDVEPRRVTVHSLEVSRFDAESGS------FELLVDCAGGTYVRTLIVDLGRAVGSAAHMTGLVRTRVG 213
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_005771422.1 (hypothetical protein EMIHUDRAFT_44604, partial [Emiliania huxleyi CCMP1516] >EOD18993.1 hypothetical protein EMIHUDRAFT_44604, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 201.8 bits (512), Expect = 3.300e-48 Identity = 109/219 (49.77%), Postives = 141/219 (64.38%), Query Frame = 0 Query: 98 GFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGT---KVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVE--AEPRPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQG 312 G V YKP +W+S DVV K RG LE + ++ T + ++KVGHGGTLDP+A G+LVLG+G C+ L YLKG KAYRA LG+E DT DS+G IT + HVT L A G+I+QRPP +SAL++ GK L+ELAR G++ E EPR V V+ L + + E+G F L ++C GGTYVR+LI DL R V + AHMT LVRT+ G Sbjct: 1 GIVVAYKPTNWTSFDVVAKARGCLEADLKKAGHTFRRRSRLKVGHGGTLDPLAEGLLVLGIGAGCKGLEGYLKGGKAYRATARLGTETDTQDSSGAITRSEPAEHVTLAALRDAAAGLTGSILQRPPIYSALKRGGKPLHELARAGKIEEGDVEPRRVTVHSLEVSRFDAESGS------FELLVDCAGGTYVRTLIVDLGRAVGSAAHMTGLVRTRVG 213
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_002941103.1 (PREDICTED: probable tRNA pseudouridine synthase 1 [Xenopus tropicalis] >OCA27479.1 hypothetical protein XENTR_v90017346mg [Xenopus tropicalis]) HSP 1 Score: 195.3 bits (495), Expect = 3.100e-46 Identity = 118/247 (47.77%), Postives = 152/247 (61.54%), Query Frame = 0 Query: 93 LLDMNGFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGTKVK---VKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEP-RPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKD-CLPEETWKTDAEAIVLQ 335 LL ++G VYKPK +S VV +++G L KEA + K + +K+GHGGTLD A+GVLV+G+G + LS L GSK Y VG LG DT+D++G +TE H+T E LE AL F GNIMQ PP FSAL+++GKRL L R G VEA+P RPV V L+L + P F L++EC GG YVRSL++DL + + + A + LVRTKQGPF L+D L EE W A LQ Sbjct: 9 LLALSGLFPVYKPKGPTSAQVVAQLKGSLLKEAGLKEYVKKRKQTLKIGHGGTLDSSASGVLVIGIGDGTKMLSTMLAGSKKYTTVGELGKATDTLDASGTVTEEKPYDHITKEDLEGALKLFTGNIMQVPPLFSALKRDGKRLSCLLRDGAEVEAKPARPVTVYQLSLRDFQP--------PVFTLDVECGGGFYVRSLVNDLGKALKSCASVKELVRTKQGPFTLEDHTLKEEDWNISRIAQALQ 247
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_010587273.1 (probable tRNA pseudouridine synthase 1 [Loxodonta africana]) HSP 1 Score: 195.3 bits (495), Expect = 3.100e-46 Identity = 115/258 (44.57%), Postives = 158/258 (61.24%), Query Frame = 0 Query: 85 TNAAIERPLLDMNGFVAVYKPKDWSSNDVVQKVRGVLEKEA-----RQRAGTKVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEP-RPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKD-CLPEETWKTDAEAIVLQL 336 T +A+ LL +NG AV+KPK +S +++ +++ L EA + K K+GHGGTLD A GVLV+GVG + L+ L G+K Y A G LG DT+DSTG++TE +T E +E L F GNIMQ PP +SAL+K+G+RL L ++GE VEA+P RPV V ++L K P P F L++EC GG Y+RSL+SD+ + + + A++ L RTKQGPF L+D LPEE W D A L+L Sbjct: 140 TKSAMANKLLSLNGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPLPKCNKRKKQTFKIGHGGTLDSAAKGVLVVGVGRGTKMLTSMLSGTKRYIATGELGKATDTLDSTGKVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEAVEAKPARPVTVYSISL-------QKFQP-PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEDHALPEEKWTIDDIAQALEL 389
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_006879978.1 (PREDICTED: probable tRNA pseudouridine synthase 1 [Elephantulus edwardii]) HSP 1 Score: 194.5 bits (493), Expect = 5.300e-46 Identity = 116/256 (45.31%), Postives = 158/256 (61.72%), Query Frame = 0 Query: 87 AAIERPLLDMNGFVAVYKPKDWSSNDVVQKVRGVLEKEA-----RQRAGTKVKVKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEP-RPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKD-CLPEETWKTDAEAIVLQL 336 +A+ LL +NG AV+KPK +S +++ +++ L EA + K K+GHGGTLD A GVLV+GVG + L+ L G+K Y AVG LG DT+DSTG+ITE +T E +E L F GNIMQ PP +SAL+K+G+RL L ++GE VEA+P RPV V ++L K P P F L++EC GG Y+RSL+SD+ + + + A++ L RTKQGPF L+D LPEE W D A L+L Sbjct: 60 SAMANKLLSLNGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPPPKCNKRKKQTFKIGHGGTLDSAAKGVLVVGVGRGTKMLTSMLSGTKRYIAVGELGKATDTLDSTGKITEEKPYDKITQEDIEGILEKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEAVEAKPARPVTVYSISL-------QKFQP-PLFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEDHALPEEKWTIDDIAQALEL 307
BLAST of NO04G03250 vs. NCBI_GenBank
Match: XP_005874562.1 (PREDICTED: probable tRNA pseudouridine synthase 1 [Myotis brandtii] >EPQ12863.1 Putative tRNA pseudouridine synthase 1 [Myotis brandtii]) HSP 1 Score: 193.7 bits (491), Expect = 9.000e-46 Identity = 111/250 (44.40%), Postives = 156/250 (62.40%), Query Frame = 0 Query: 85 TNAAIERPLLDMNGFVAVYKPKDWSSNDVVQKVRGVLEKEARQRAGTKVK-----VKVGHGGTLDPMATGVLVLGVGTACRDLSFYLKGSKAYRAVGLLGSEYDTMDSTGQITETVDVAHVTPETLEAALGAFRGNIMQRPPAFSALRKNGKRLYELARKGEVVEAEP-RPVQVNLLNLVPAEEEAGKVMPWPHFGLEIECQGGTYVRSLISDLARTVDARAHMTALVRTKQGPFFLKD-CLPEETWKTD 328 + AA+ LL ++G AV+KPK +S +++ +++ L EA + K +K+GHGGTLD A GVLV+G+G + L+ L GSK Y A+G LG DT+DSTG++TE +T E +E L F GNIMQ PP +SAL+K+G+RL L ++GEVVEA+P RPV V L+L K P P F L++EC GG Y+RSL+SD+ + + + A++ L RTKQGPF L + LPE+ W D Sbjct: 47 SKAALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSAELTKRKRQTLKIGHGGTLDSAARGVLVIGIGRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDQITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLVKRGEVVEAKPARPVTVYSLSL-------QKFQP-PFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLDEHALPEDKWTID 288 The following BLAST results are available for this feature:
BLAST of NO04G03250 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03250 ID=NO04G03250|Name=NO04G03250|organism=Nannochloropsis oceanica|type=gene|length=1489bpback to top protein sequence of NO04G03250.1 >NO04G03250.1-protein ID=NO04G03250.1-protein|Name=NO04G03250.1|organism=Nannochloropsis oceanica|type=polypeptide|length=339bpback to top Synonyms
Publications
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