NO04G03220, NO04G03220 (gene) Nannochloropsis oceanica

Overview
NameNO04G03220
Unique NameNO04G03220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr4:898077..899135 -

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Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:898077..899135 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009472DUF1092
Homology
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_009038004.1 (hypothetical protein AURANDRAFT_27892 [Aureococcus anophagefferens] >EGB07385.1 hypothetical protein AURANDRAFT_27892 [Aureococcus anophagefferens])

HSP 1 Score: 226.9 bits (577), Expect = 1.000e-55
Identity = 127/289 (43.94%), Postives = 190/289 (65.74%), Query Frame = 0
Query:   75 LAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDL-----KVRVVPSRSTNALFSWIDEREEEVYSKMPGYD------SQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLD-GEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVE--GFFLLRE 350
            ++ EWELDC+SRPV+ + GKKLWEL++ D+ G++R V A+P+  VNS  +RK +E +I  APVKP VIRFFR  M NM++++L  +      +RV PSR+T+AL+ WI+ERE +VY  M GY       ++ R +  V   R    +P+GL G++YAF+ LP S  L  G +  +N G+ +L  +  +   D  + GI I + R+ ++A  LAS EL  ++A+ ++R +VL+V +D  +L+A L+D +RVEA  FEK K+ LGG+HF+ +Q+ E  DGVE  GF+LLRE
Sbjct:   59 ISSEWELDCFSRPVLVK-GKKLWELLITDASGQWRDVVALPATGVNSVAVRKAIEDVIARAPVKPTVIRFFRRQMLNMLTIALNGVAANRPTLRVTPSRATHALYDWIEEREADVYPGMEGYSPGAGAATRDRMTAPVTASR----LPEGLRGEQYAFVTLPLSEVLSGGGITEENVGVGKLINVKPAYEVDALLPGIAILTRRSDALAMSLASTELAGVRADAAQRQLVLDVALDESFLVAKLDDDQRVEAAAFEKAKQGLGGLHFVVVQSPE-DDGVEPAGFWLLRE 341          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: AFP65652.1 (hypothetical protein CMESO_508 [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 223.4 bits (568), Expect = 1.100e-54
Identity = 122/279 (43.73%), Postives = 178/279 (63.80%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMR--DSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGIS--RLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMA-----TLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLR 349
            WE+D +SRPV+ EDGKKLWEL+V D  G F  +EA+P+N++NSREL+K +  +IE +P KP +I+FFR+ MFNM++++L DL + V PSR T ALF  I EREE VY KM GY   M+  D ND+   + P+ MPD L G+KY F    AS  +    +  NSGI+  ++  L K+   ++++ GIVI S RAKS+++W   +EL  I  +   + +++E G+DTQYL       T+ D   +E ++FEK K++  GVHF+A+Q       + G + LR
Sbjct:   62 WEIDFFSRPVLNEDGKKLWELIVVDQKGTFEHIEAIPNNLINSRELKKRINALIEKSPQKPILIKFFRSQMFNMINIALSDLNINVRPSRRTFALFEKISEREENVYPKMSGYRPFMKEVDVNDML-KKVPQKMPDTLRGEKYVF----ASISIPELESMVNSGINFGQMCPLPKNFDFNQKIPGIVILSERAKSLSSWFDGIELFNIICDLETKNIMIECGLDTQYLFGKFSEETIQDRVNLEPKLFEKNKKKSQGVHFIAVQEYSKKKPIYGIWTLR 335          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_001712548.1 (hypothetical protein HAN_3g413 [Hemiselmis andersenii] >ABW98223.1 hypothetical protein HAN_3g413 [Hemiselmis andersenii])

HSP 1 Score: 223.0 bits (567), Expect = 1.400e-54
Identity = 108/276 (39.13%), Postives = 176/276 (63.77%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLRE-PEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVR-----RVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLR 349
            WELD +SRPV+ E+GKKLWE+++ D  G F  +E +P+N+VNS+EL+K ++ +++ +  KP+VI+FFR+ MFNM++++L DL + V PSR T +L++ I EREE++Y  M GY   MR+S+    L++ P+ MPD L G+KY F  L +       +N  +   S    L     +++Q+ GIVIYS RAKS++ WL  +ELC +  +   + ++LE G+D Q+L A  ++ +       E + FEK K++  G+HF+A+Q+    + + G + L+
Sbjct:   60 WELDFFSRPVVDENGKKLWEIIIVDQKGNFEHIETVPNNLVNSKELKKRIKILLDKSDKKPKVIKFFRSQMFNMINIALSDLDLIVRPSRRTFSLYNKISEREEKIYPNMKGYRPFMRESDFNASLKKVPQKMPDALRGEKYIFASLSSDEL--SSINSSDIAFSGFCPLPAEFDKNQQIPGIVIYSERAKSLSGWLDGVELCNVFCDLENKNLILECGLDIQFLFAKFSETKNSKNSNFEPKFFEKNKKKSQGIHFVAVQSYSKQNEIAGIWTLK 333          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_005706523.1 (hypothetical protein Gasu_25920 [Galdieria sulphuraria] >EME30003.1 hypothetical protein Gasu_25920 [Galdieria sulphuraria])

HSP 1 Score: 207.6 bits (527), Expect = 6.300e-50
Identity = 120/295 (40.68%), Postives = 178/295 (60.34%), Query Frame = 0
Query:   62 PSTTSRQDTVR--ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRV--EAQIFEKGKEELGGVHFLALQTDESSDG---VEGFFLLRE 350
            PS+  +    R  E+ +  WELD YSRPV G+D K++WEL+V D       VE++P++M+NS ELRK VE+++E   VKP+V++F R  MFNM+SL+LKDL   V PSR T  L+  + +RE  +YSKMPGY S+   S     L   E +PD L G+K+AF C     FL    + D      +F    SI  +K++ GI++YS RA S+A+W A  E+ FIK    +  +VLE GI++ Y +A + +  R+  EA+ FE+ K  + G HF A+Q+ + + G   ++G +LL +
Sbjct:   71 PSSQQQASEAREIEQPSTVWELDFYSRPVYGKDNKRIWELIVVDESFLLCHVESVPNDMINSAELRKRVERLLEQVTVKPKVVKFSRMPMFNMISLALKDLGFEVKPSRRTYRLYHVLRDREANIYSKMPGYRSENTLSTSY--LYSTERLPDALRGEKFAF-CTADYSFLYELQSSDTIPYCDIFNTGDSILLEKELPGIIVYSERADSLASWTAGAEVSFIKFREEELELVLECGINSHYRLAKIAEDHRLVEEAKTFEQMKWHMKGFHFYAIQSLKETSGTSHIKGLWLLND 362          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: CEL93243.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 206.5 bits (524), Expect = 1.400e-49
Identity = 112/286 (39.16%), Postives = 177/286 (61.89%), Query Frame = 0
Query:   73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLK-VRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLR-EPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPR------DKQVQGIVIY-SPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            ++++ EWELD YSRP+ G DGKK+WE+++ D  G F+  E +P+  VNSR L++L E++ +DAP +P+V+RFFR  M +M+ + L  +  + V PSR+T  L+ W+DERE++VY  M GYD+ +   +  F L  EPE +PD +M +K+AF  +P S   D E  +  +  ++L  L  ++        D  + GIV++ S RA+ +A+ +   E+ F+KA  +KR + LE G+D  +L+  L+D  R +A  FE+ K    G+HF A+Q  E  + V  F+LLRE
Sbjct:  290 DKVSDEWELDFYSRPIKGADGKKIWEVLITDKTGNFKYAEVVPTRQVNSRALKELFERVADDAPTRPKVVRFFRAQMQSMIKIGLSAVSGIDVRPSRATYRLYDWLDEREKKVYPSMAGYDASL--ISQFFPLDFEPERLPDEIMCEKFAFAQMPLSEIAD-ETRFMGNIATKLCPLPTALEEGSADASDIMIPGIVMFASRRAQVVASLMMGKEIGFLKAYVTKRQLCLEAGLDDSFLLCGLDDELRRQAADFERQKLAALGLHFFAIQASEEKEPV-AFWLLRE 571          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: OSX68742.1 (hypothetical protein BU14_2307s0001 [Porphyra umbilicalis])

HSP 1 Score: 206.1 bits (523), Expect = 1.800e-49
Identity = 119/282 (42.20%), Postives = 165/282 (58.51%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEI--------MPDGLMGDKYAFMCLPASHFLDGEVNYDNSG--ISRLFALDKS-IPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            WELD YSRPV   +GKK WEL++ D  G +  VEA  +  VNS  LR  V  ++ DAPVKP  IRFFR+AMFNM++++L  L V   PSR T ALF  I ER+  VY  + GY  +      + G   P +        MPD L G+ +AF+ LPAS  L G    +++G        +D + +  D  + G+V+YS RAK +AAW++  E+  +KA+ + + +VL  G+   +L A L    R E + FE+ KE  GG+HFLA+  +E SD VEGF+LLRE
Sbjct:   81 WELDFYSRPVFDANGKKRWELLLTDKNGVWSHVEAFANADVNSANLRARVAAVVADAPVKPTTIRFFRSAMFNMINIALSGLDVVAAPSRRTYALFDLIAERQATVYPTLDGY-REPDAGGGLPGFLRPGVMDATMTSPMPDALRGESFAFVQLPASTAL-GFFGAESTGDFFGDACRVDPAVVAADPLLTGLVVYSKRAKGVAAWMSGAEVVAVKADVATKEVVLSCGLADAFLFARLVGRLREEGKAFERAKEAAGGLHFLAVMVEEGSDEVEGFWLLRE 360          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_005536134.1 (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >BAM79848.1 hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 203.0 bits (515), Expect = 1.500e-48
Identity = 121/318 (38.05%), Postives = 175/318 (55.03%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLK-VRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEI---------------------MPDGLMGDKYAFMCL-----------------PASHFLDGEVNYD-------NSGISRLFALDKSIPR-DKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            WELD YSRPV+G DGK+LWEL+VCD  G F  VEA P+NMVNSREL + V+ +IE++ V+PR+IRFFR  M NM+ ++++++  V   PSR T ALF  +  RE  VY ++PGY+ +     +  G R  E+                     +PD L GD++AF+ +                 P S   +  +N D       N+G ++  ALD   P  +  V G+VIYS RA  +AAW +  EL +I A+  ++ + LE G+D  YL A +      EA+ F + K+   G+HFLA+Q     + V GF+LLR+
Sbjct:   91 WELDFYSRPVVGADGKRLWELVVCDRDGSFVHVEAFPNNMVNSRELARAVKTLIEESSVRPRIIRFFRAQMRNMIQIAMQNISGVETRPSRRTYALFLALAYRERNVYPRLPGYEGKSIGIGNRSGTRGAELSLAESIGNMLKTPVDLKVAARLPDELQGDRFAFVTILLRDVTQMNAAGFGELCPVSLSAE-SMNLDIQMRTSGNAGSTQSAALDLGAPSPETLVPGVVIYSRRALPLAAWFSGTELAYIIADEQQKEIYLECGLDAAYLFARIQPSLEAEARAFNEAKKAARGLHFLAIQEKPDDEDVCGFWLLRD 407          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: WP_071515031.1 (DUF1092 domain-containing protein [Geitlerinema sp. PCC 9228])

HSP 1 Score: 196.1 bits (497), Expect = 1.900e-46
Identity = 111/288 (38.54%), Postives = 168/288 (58.33%), Query Frame = 0
Query:   75 LAQEWELDCYSRPVIGEDGKKLWELMVCDSLGE--------FRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGY-DSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLD---GEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLN-DVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            ++  WELD YSRP++ E+ KK+WEL+VC+S  E        FR  +  PSN VNS  L   +++ I+ AP  P  IRFFR  M NM+S + KD+ ++ VPS+ T AL  W+ ER E+VY + P + +S M      F    P+ +PD + G+K+ F+ LPA  F      E+++       L  +D   P    V G++++S RA  +AAW++ +EL  I  +     +VL  G    +++A LN D  R EAQ F++ KE+ GG+HFLA+Q+D +S+   GF+LL+E
Sbjct:    1 MSTTWELDFYSRPIVDENNKKIWELLVCESPMEVARDPDSLFRFAKYCPSNQVNSIWLTSALQEAIDQAPSPPVRIRFFRRQMNNMISKACKDMGLQAVPSQRTVALSCWLQERMEKVYPQDPNFQESAMNAPGVRFNAPTPQPLPDAMRGEKWGFVSLPAQEFQQMSAWEISFGEGFPLSLLDIDPKTP----VPGLIVFSRRATPLAAWMSGLELDAIAFHEWASQLVLATGFSEAWILAQLNDDTTRQEAQGFQQLKEKAGGLHFLAVQSDPNSESFAGFWLLQE 284          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_001713300.1 (hypothetical protein GTHECHR2175 [Guillardia theta] >CAC27084.1 hypothetical protein [Guillardia theta])

HSP 1 Score: 192.6 bits (488), Expect = 2.100e-45
Identity = 105/272 (38.60%), Postives = 163/272 (59.93%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGL-REPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            WELD +SRPVI +DGKKLWEL++ +     + +E++P+NMVNS+ELR+ +  II  A  KP VI+FFR  MFNM+S++L DL + V PSR T ALF  I ERE+ +Y +M GY   +R+  +   L R P+ MPD L+G+ ++F+           +  D S +   F +D++     ++ GIVI S RA S+A W+  +E+  I  +  K  +VL+  +DT++L A ++  +  +   FE  K    G HF+++ +    + + GF+LL E
Sbjct:   48 WELDFFSRPVILDDGKKLWELIIVNKDKSLQIIESVPNNMVNSKELRRKLLNIINSAEKKPDVIKFFRAQMFNMISIALSDLDINVKPSRRTYALFEIIREREKTIYPEMIGYKPYLREYKEDLSLKRFPQRMPDILLGENFSFVLASLEEI--NVILKDQSVMKDSFKIDENKYDIDKIPGIVILSNRANSLANWINGLEVFSISFDQEKSSIVLDCSLDTKFLFAKIDIKKIQDGTKFENQKRLNSGFHFISVMSGLPENKIYGFWLLNE 317          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: WP_009786421.1 (DUF1092 domain-containing protein [Lyngbya sp. PCC 8106] >EAW35040.1 hypothetical protein L8106_07991 [Lyngbya sp. PCC 8106])

HSP 1 Score: 191.4 bits (485), Expect = 4.700e-45
Identity = 106/282 (37.59%), Postives = 166/282 (58.87%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDS---LGE-----FRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDK-SIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKR-IMVLEVGIDTQYLMATLNDV-RRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            WELD YSRP+  E+GKK+WE+++C +   +G+     FR  +  PS  VNS  L+  ++  I++A   P+ IRFFR  M NM+  + K+L + V  SR T ALF W+DER E VY  +P Y      S   F    P+ +PD L GD++AF+ L AS F   E++  N G    F L    +  + Q+ G++++S RA  +AAW++ +EL F++ N   R  ++LE G +  +++A L D   + EA+ FE+ K +   VHFLA+Q+D +++   G ++L+E
Sbjct:    5 WELDFYSRPLRDEEGKKVWEVLICQTPLEIGDRAESLFRYTQFCPSTDVNSIWLQGAIQAAIKEADETPQRIRFFRRPMANMILKACKELAIPVTASRRTYALFQWLDERIENVYPTLPNYQETANPSVQ-FASSPPQRLPDALQGDQWAFVSLEASAF--EEMSEWNIGFGEAFGLPMLGLSGETQIPGLIVFSSRATPLAAWMSGLELAFLRVNKGDRPSLLLETGENDSWILANLTDAGTQAEAEQFEEAKRQAKNVHFLAVQSDPNTESFAGLWMLQE 283          
The following BLAST results are available for this feature:
BLAST of NO04G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_009038004.11.000e-5543.94hypothetical protein AURANDRAFT_27892 [Aureococcus... [more]
AFP65652.11.100e-5443.73hypothetical protein CMESO_508 [Chroomonas mesosti... [more]
XP_001712548.11.400e-5439.13hypothetical protein HAN_3g413 [Hemiselmis anderse... [more]
XP_005706523.16.300e-5040.68hypothetical protein Gasu_25920 [Galdieria sulphur... [more]
CEL93243.11.400e-4939.16unnamed protein product [Vitrella brassicaformis C... [more]
OSX68742.11.800e-4942.20hypothetical protein BU14_2307s0001 [Porphyra umbi... [more]
XP_005536134.11.500e-4838.05hypothetical protein, conserved [Cyanidioschyzon m... [more]
WP_071515031.11.900e-4638.54DUF1092 domain-containing protein [Geitlerinema sp... [more]
XP_001713300.12.100e-4538.60hypothetical protein GTHECHR2175 [Guillardia theta... [more]
WP_009786421.14.700e-4537.59DUF1092 domain-containing protein [Lyngbya sp. PCC... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009468NSK009468Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03220.1NO04G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579065gene_2097Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g68gene1863Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03220.1NO04G03220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03220 ID=NO04G03220|Name=NO04G03220|organism=Nannochloropsis oceanica|type=gene|length=1059bp
ATGTCGTCGCTTCTAGGCACATGGCTAGTGCAGTTGATGGTCTTGGCCAC
GCTGTTGCTACCCCTGCAGGCGTTCGTCCCTTGTCGTCCCCCGTCGCATG
GTCCCCTACAGCAGAAAAGGCAGTGGGGTTGTGGCCACAGCAGCCTCGGC
TCGCCGGAGGTCGTCGTGTCTGCGAGCCTGGAGCCATCTACCACGTCGCG
GCAAGACACGGTGAGGGAGCGGCTGGCCCAGGAATGGGAACTAGACTGCT
ATTCCAGGCCCGTCATTGGAGAGGACGGAAAAAAACTGTGGGAGCTGATG
GTGTGTGATTCCCTGGGGGAGTTCCGGGCCGTGGAAGCCATGCCTAGCAA
CATGGTCAACAGCCGGGAGCTGCGCAAGCTAGTAGAGAAGATCATTGAGG
ACGCACCTGTCAAGCCCCGAGTCATCCGCTTCTTCCGCAATGCCATGTTT
AACATGGTCAGCCTCTCTCTTAAGGATTTGAAAGTCCGCGTGGTGCCCAG
TCGATCTACGAACGCCCTCTTCAGCTGGATCGACGAGCGTGAGGAGGAGG
TCTACTCCAAAATGCCGGGCTATGACTCCCAGATGCGAGACTCGAACGAC
GTCTTTGGTCTGCGAGAGCCCGAGATCATGCCGGATGGCCTTATGGGGGA
TAAATACGCCTTCATGTGCCTTCCTGCCTCTCACTTTTTAGACGGTGAGG
TGAATTACGACAACAGCGGCATCTCCCGCCTCTTCGCGCTTGACAAGTCT
ATCCCCCGGGACAAGCAGGTGCAGGGCATTGTGATCTACAGCCCCCGTGC
CAAGTCCATTGCCGCCTGGTTGGCGAGCATGGAGCTGTGCTTTATCAAGG
CCAACTTCAGCAAGCGCATTATGGTCCTTGAGGTGGGCATCGATACCCAG
TATTTGATGGCCACACTAAACGACGTCAGACGCGTGGAGGCACAGATCTT
CGAGAAGGGAAAGGAGGAGCTGGGTGGTGTACATTTTTTGGCACTGCAAA
CGGACGAGAGTAGCGATGGTGTGGAGGGCTTCTTCTTGTTGCGTGAGCGC
AAACGTTAG
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protein sequence of NO04G03220.1

>NO04G03220.1-protein ID=NO04G03220.1-protein|Name=NO04G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSSLLGTWLVQLMVLATLLLPLQAFVPCRPPSHGPLQQKRQWGCGHSSLG
SPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELM
VCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMF
NMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSND
VFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKS
IPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQ
YLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRER
KR*
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