NO04G03220, NO04G03220 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G03220 vs. NCBI_GenBank
Match: EWM28702.1 (rna binding protein [Nannochloropsis gaditana]) HSP 1 Score: 551.6 bits (1420), Expect = 1.800e-153 Identity = 279/347 (80.40%), Postives = 304/347 (87.61%), Query Frame = 0 Query: 9 LVQLMVLATLLLPLQAFVPCRPPS---HGPLQQKRQWGCGHSSLGSPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRERKR 353 ++Q + LAT L+PL+AF+ PS P +Q+ H V S+ + ST SRQDTV+ERLAQEWELDCYSRPV+GEDGKKLWELMVCDSLGEFRAVE MPSNMVNSRELRKLVEK+IEDAPVKPRVIRFFRNAMFNMVSL+LKDLKVRVVPSRSTNAL+SWIDERE EVY+K+PGYD QMRDSNDVFGLREPE+MPDGLMGDKYAFMCLP S FLDGEVNY+NSGI RLF LD S+PRD+QVQG+VIYS RAKSIAAWL SMELCFIKANFSKRIMVLEVGIDTQYLMATLND+RRVEAQIFE+GKE+LGGVHFLALQTDE SDGVEGFFLLRERKR Sbjct: 5 VLQTLALATFLMPLEAFLCDYFPSPLRSQPRRQQDYQDAWHERNIQQRHVFSSLGQKSTASRQDTVKERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERKR 351
BLAST of NO04G03220 vs. NCBI_GenBank
Match: CBJ25757.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 291.6 bits (745), Expect = 3.300e-75 Identity = 135/278 (48.56%), Postives = 195/278 (70.14%), Query Frame = 0 Query: 74 RLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAP--VKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 +++ EWELD YSRPV+G DGKKLWEL++CDS G FR V +PSNMVNSRE+R+ +E +IE AP KP VIRFFRNAMFNM+ ++LK+++V V P R+T A++ W++ERE +VY M G+ M+ F +R P +PD L G++YAF+ +P S F G +N +N G+ RL LD S+P D + G+ +++ RA+ +A W+ +E+ + KA+ R + LE GI+TQYL+A + +R EAQ FE+ K LGG HF+A+Q++ +D V GF+LL+E Sbjct: 31 KISNEWELDVYSRPVVGADGKKLWELLICDSTGNFRHVSPIPSNMVNSREVRRTIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEVAVKPCRTTYAMYQWLEERERDVYPAMAGFKPTMKQP-AFFDIRTPTPLPDALRGEQYAFVTMPVSEFRQGNINDENVGVGRLCPLDASLPDDAMIPGLAMFTARAEPLATWMTGLEVAYFKADLKNRELALECGINTQYLVARVQGDQRKEAQGFEEAKRALGGFHFVAVQSNPDADDVAGFWLLKE 307
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_002290681.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92433.1 predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 276.9 bits (707), Expect = 8.400e-71 Identity = 149/347 (42.94%), Postives = 224/347 (64.55%), Query Frame = 0 Query: 8 WLVQLMVLATLLLPLQAFVPCRPPSHGPLQQKRQWGCGHSSLGSPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFG----LREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 W + L V+A L +AF PS + + G +SL S ++ ++++ + T +++++EWELDCYSRPV+ + KKLWE+++ DS G + A+PSN VNSRE+R++VE+II+++ VKP IRFFR AMFNM++++L ++ V PSR T AL WI++R +VY KM GY + M + G +R +PD L G+KYAF+ LP + FL G ++ +N G+ RL +D ++ D VQG+VI +PRAK++A+WLA E+ +KA+ KR +V+E ID QYLMA LND +R EA ++E+GK+ L G+HF+++Q DE D GF+LLRE Sbjct: 16 WFIAL-VIACTLNSSRAFT---SPSSSTVGRTSNNLVGTTSLSSSTLISNSAI---NDVEETTNWDKVSEEWELDCYSRPVLVDGKKKLWEILMTDSSGNMKVCRALPSNKVNSREVRRVVEEIIDESEVKPSTIRFFRGAMFNMINIALSEIDVIAKPSRCTFALAQWIEDRNRDVYPKMEGYRATMSGIGGIGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFLPGGGIDNNNIGVGRLCPVDSTLAADSFVQGVVILTPRAKALASWLAGTEVAGLKADLRKRELVMETDIDNQYLMAKLNDDQRREAAVYEEGKDALNGLHFISVQKDEDDDPA-GFWLLRE 354
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_002179348.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49171.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 265.4 bits (677), Expect = 2.500e-67 Identity = 135/275 (49.09%), Postives = 189/275 (68.73%), Query Frame = 0 Query: 78 EWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSN--DVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 EWELDCYSRPV GKKLWE+++ DS G FR + +PSN VNS+ LR++V+ ++E A VKP IRFFR AMFNM++++L +L V PSR T AL SW+++R E VY +M G+++ M S +R P +PD L G+KYAF+ LP + FL G V+ N G+ R+ + + IP D VQG+VI + RA+++A+WLA E+ + A+ KR++V+E IDTQYLMA LN+ +RVEA E+GK L G+HF+++Q +E SD GF+LLRE Sbjct: 1 EWELDCYSRPV-AVAGKKLWEVLITDSAGSFRFRQTLPSNQVNSKTLRQIVDDLMERADVKPNTIRFFRGAMFNMINIALMELPVTSKPSRCTFALASWLEDRHENVYPQMEGFNANMVGSTIPSFLDVRTPVRLPDALRGEKYAFVALPVAEFLPGGSVDATNIGVGRICTIPRDIPADAFVQGVVILTNRAEALASWLAGTEVVALTADLRKRVLVMETDIDTQYLMAKLNESQRVEAASLEEGKAGLKGLHFVSVQENEDSDPT-GFWLLRE 273
BLAST of NO04G03220 vs. NCBI_GenBank
Match: OEU21910.1 (DUF1092-domain-containing protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 258.1 bits (658), Expect = 4.100e-65 Identity = 131/292 (44.86%), Postives = 191/292 (65.41%), Query Frame = 0 Query: 73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPV--KPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDV-------FGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALDKSI-----PRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 ++ + +WELDCYSRPVI GKKLWE+++ DS G FR V+ +PSN VNS+E+R+ VE ++ED+ + KP IRFFR AMFNM++++L +L V PSR T ++ W++ER ++VY KM GY + M + + +R P MPD L G+KYAF+ LP + FL G++N +N G+ RL + S P D VQG+VI + R + +AAWLA E+ + A+ KR ++++ IDT+YLMA L+D +R E FE+GK+ L G+HF+ +Q DE D GF+L+RE Sbjct: 40 KKTSDDWELDCYSRPVIAPGGKKLWEVLITDSTGSFRFVKTLPSNKVNSKEVRQTVEDLMEDSRIESKPSTIRFFRGAMFNMINIALSELDVVSRPSRGTYSIAQWLEERHKDVYPKMEGYQANMGVGSGLGAGVPSFLDVRTPVKMPDALRGEKYAFVALPLAEFLPGGDINDNNIGVGRLCTISDSFLEDLPPADTFVQGVVILTQRPEPLAAWLAGTEVASMSADLRKRNLIMDTDIDTRYLMARLDDNQREEGVAFEEGKDALNGLHFVCVQRDEDDDPA-GFWLMRE 330
BLAST of NO04G03220 vs. NCBI_GenBank
Match: GAX17579.1 (hypothetical protein FisN_18Lh230 [Fistulifera solaris]) HSP 1 Score: 256.5 bits (654), Expect = 1.200e-64 Identity = 136/289 (47.06%), Postives = 193/289 (66.78%), Query Frame = 0 Query: 73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAP-VKPRVIRFFRNAMFNMVSLSLKDL-KVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDS---NDVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFAL------DKSIPR-DKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLR 349 + + +WELDCYSRPVI GKKLWE+++CDS FR + +PS+ VNS+ LR++VE+ +E P KP VIRFFR AMFNM++++LK+L + PSR T AL +W++ER VY KM GY++QM ++ ++ P +PD L G++YAF+ LP + FL G VN D G+ RL L +S+P D V G+V+ +PRAK++A WLA EL +KA+ KR +++E +DTQYLMA LND +R E E+ K++L G+HF+++Q DE SD EGF+LLR Sbjct: 80 DEVTDQWELDCYSRPVIQPGGKKLWEVLICDSGNTFRFRQELPSSQVNSKTLRQVVEQCVELVPTAKPSVIRFFRGAMFNMMNVALKELPDITAKPSRCTFALAAWLEERHATVYPKMEGYNAQMMNTATGASFLNVQTPVKLPDSLRGERYAFVSLPLAEFLPGGGVNDDTIGVGRLCPLPPALLWQQSLPAGDTFVSGVVLMTPRAKAMATWLAGTELMSLKADLRKRQLIMETDLDTQYLMARLNDEQRAEGAAMEQAKDQLQGLHFVSVQVDEESD-PEGFWLLR 367
BLAST of NO04G03220 vs. NCBI_GenBank
Match: GAX18017.1 (hypothetical protein FisN_18Hh230 [Fistulifera solaris]) HSP 1 Score: 255.4 bits (651), Expect = 2.600e-64 Identity = 134/284 (47.18%), Postives = 190/284 (66.90%), Query Frame = 0 Query: 73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAP-VKPRVIRFFRNAMFNMVSLSLKDL-KVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDS---NDVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALD--KSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLR 349 + + +WELDCYSRPVI GKKLWE+++CDS FR + +PS+ VNS+ LR++VE+ +E P KP VIRFFR AMFNM++++LK+L + PSR T AL +W++ER VY +M GY++QM ++ ++ P +PD L G++YAF+ LP + FL G VN D G+ RL L + D V G+V+ +PRAK++A WLA EL IKA+ KR +++E +DTQYLMA LND +R E E+ K++L G+HF+++Q DE SD EGF+LLR Sbjct: 75 DEVTDQWELDCYSRPVIQPGGKKLWEVLICDSGNSFRFRQELPSSQVNSKTLRQVVEQCVELVPTAKPSVIRFFRGAMFNMMNVALKELPDITAKPSRCTFALAAWLEERHATVYPQMEGYNAQMMNTAAGASFLNVQTPVKLPDSLRGERYAFVSLPLAEFLPGGGVNDDTIGVGRLCPLPPLQQSAGDTFVSGVVLLTPRAKAMATWLAGTELMSIKADLRKRQLIMETDLDTQYLMARLNDEQRAEGAAMEQAKDQLQGLHFVSVQVDEESD-PEGFWLLR 357
BLAST of NO04G03220 vs. NCBI_GenBank
Match: EJK69024.1 (hypothetical protein THAOC_09759, partial [Thalassiosira oceanica]) HSP 1 Score: 246.5 bits (628), Expect = 1.200e-61 Identity = 126/262 (48.09%), Postives = 178/262 (67.94%), Query Frame = 0 Query: 93 GKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFG----LREPEIMPDGLMGDKYAFMCLPASHFLD-GEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 GKKLWE+++ DS G R ++PSN VNSRE+RK+VE +I ++ VKP IRFFR AMFNM++++L ++ V PSR T AL W++ER +VY +M GY + V G +R +PD L G+KYAF+ LP + F++ G VN +N G+ RL +D ++P D VQG+VI + RAK++A+WLA E+ IKA+ KR +V+E ID QYLMA L+D +R EA FE+GK+ L G+HF+++Q DE+ D GF+LLRE Sbjct: 117 GKKLWEILITDSSGNLRVCRSLPSNKVNSREVRKVVEDVIGESEVKPGTIRFFRGAMFNMINIALSEIDVVAKPSRCTFALAQWLEERNRDVYPQMEGYQAAKARLGGVGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFIEGGSVNNENIGVGRLCPVDSTLPADSFVQGVVILTSRAKALASWLAGTEVGGIKADIRKRELVMETDIDNQYLMAKLDDDQRREAANFEEGKDSLNGLHFVSVQEDENDDPA-GFWLLRE 377
BLAST of NO04G03220 vs. NCBI_GenBank
Match: KOO32085.1 (psab translation factor [Chrysochromulina sp. CCMP291]) HSP 1 Score: 244.2 bits (622), Expect = 6.100e-61 Identity = 128/275 (46.55%), Postives = 180/275 (65.45%), Query Frame = 0 Query: 79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDL-KVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALD-KSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATL-NDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 W+LD YSRPV G DGKKLWEL+V D G F+ VEA+PSN VNSRELR V+++I++A V+P IRFFR M NM+S++L +L V+ PSR T AL+ WI+ERE VY MPGY + D GL+ P +P+ L G++YA LP + F+ G + DN G L L + D V G+VI+S R+K+IAAWL ++L F+ A R + +EVG+DTQYL+A + ++ EA+ FE+ K GG+HFL++Q+ ++ +GF+LLR+ Sbjct: 53 WQLDFYSRPVQGADGKKLWELLVTDETGAFKHVEAVPSNCVNSRELRSRVQRLIDEAEVRPSSIRFFRAQMKNMISIALNELPDVQCKPSRVTYALYDWIEERERTVYPSMPGY---RKPRPDPAGLKLPVKLPEQLRGEQYAVATLPYAEFIPGGSITEDNIGFGALCPLPAMELEPDNMVAGVVIFSRRSKAIAAWLTGLDLAFVSAVLESRELHIEVGLDTQYLLARMRTPIQTAEAETFEERKRATGGLHFLSIQSGPEAEQPDGFWLLRD 324
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_005715689.1 (unnamed protein product [Chondrus crispus] >CDF35870.1 unnamed protein product [Chondrus crispus]) HSP 1 Score: 236.1 bits (601), Expect = 1.700e-58 Identity = 123/294 (41.84%), Postives = 179/294 (60.88%), Query Frame = 0 Query: 63 STTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFG---LREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFA----LDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350 ST S + + WELD YSRPV+G DGKKLWEL++ D+ F +EA+P++MVNSRELRK V+ +I+DA PRVIRFFR MFNM++++L ++ V+V PSR T ALF + EREE VY KMPG+ + VF L + +PD L + ++F P E +D + F +D S+P+D V G+V++S RA +AAW++ EL FI+A ++ + E G++T Y A + D + EA+ F+ GK G+HFLA+QT ++ ++G +LLRE Sbjct: 101 STESLPIPFAPQTSDVWELDFYSRPVVGMDGKKLWELIITDTSAAFTHIEAIPNSMVNSRELRKRVQAVIDDAQNPPRVIRFFRTQMFNMINIALSEIDVQVAPSRKTYALFQLLKEREETVYVKMPGFQKSLTSQATVFSGIDLVVIQPLPDALRCESFSFGSFPLGQL---EEFFDTANSKDFFGDCCLVDPSVPKDTLVPGLVVFSRRAYPLAAWISGTELAFIRATLERQEIAFECGLNTVYKFAQITDDIQDEARTFQAGKANTAGLHFLAVQTSSDAEEIDGMWLLRE 391 The following BLAST results are available for this feature:
BLAST of NO04G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20 Position : 0 Zoom : x 1
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G03220 ID=NO04G03220|Name=NO04G03220|organism=Nannochloropsis oceanica|type=gene|length=1059bpback to top protein sequence of NO04G03220.1 >NO04G03220.1-protein ID=NO04G03220.1-protein|Name=NO04G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bpback to top Synonyms
Publications
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