NO04G03220, NO04G03220 (gene) Nannochloropsis oceanica

Overview
NameNO04G03220
Unique NameNO04G03220
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1059
Alignment locationchr4:898077..899135 -

Link to JBrowse

Properties
Property NameValue
DescriptionRna binding protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:898077..899135 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009472DUF1092
Homology
BLAST of NO04G03220 vs. NCBI_GenBank
Match: EWM28702.1 (rna binding protein [Nannochloropsis gaditana])

HSP 1 Score: 551.6 bits (1420), Expect = 1.800e-153
Identity = 279/347 (80.40%), Postives = 304/347 (87.61%), Query Frame = 0
Query:    9 LVQLMVLATLLLPLQAFVPCRPPS---HGPLQQKRQWGCGHSSLGSPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRERKR 353
            ++Q + LAT L+PL+AF+    PS     P +Q+      H        V S+  + ST SRQDTV+ERLAQEWELDCYSRPV+GEDGKKLWELMVCDSLGEFRAVE MPSNMVNSRELRKLVEK+IEDAPVKPRVIRFFRNAMFNMVSL+LKDLKVRVVPSRSTNAL+SWIDERE EVY+K+PGYD QMRDSNDVFGLREPE+MPDGLMGDKYAFMCLP S FLDGEVNY+NSGI RLF LD S+PRD+QVQG+VIYS RAKSIAAWL SMELCFIKANFSKRIMVLEVGIDTQYLMATLND+RRVEAQIFE+GKE+LGGVHFLALQTDE SDGVEGFFLLRERKR
Sbjct:    5 VLQTLALATFLMPLEAFLCDYFPSPLRSQPRRQQDYQDAWHERNIQQRHVFSSLGQKSTASRQDTVKERLAQEWELDCYSRPVVGEDGKKLWELMVCDSLGEFRAVETMPSNMVNSRELRKLVEKVIEDAPVKPRVIRFFRNAMFNMVSLALKDLKVRVVPSRSTNALYSWIDEREREVYAKLPGYDPQMRDSNDVFGLREPEVMPDGLMGDKYAFMCLPVSQFLDGEVNYENSGIGRLFQLDASLPRDEQVQGLVIYSSRAKSIAAWLHSMELCFIKANFSKRIMVLEVGIDTQYLMATLNDIRRVEAQIFEQGKEKLGGVHFLALQTDEESDGVEGFFLLRERKR 351          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: CBJ25757.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 291.6 bits (745), Expect = 3.300e-75
Identity = 135/278 (48.56%), Postives = 195/278 (70.14%), Query Frame = 0
Query:   74 RLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAP--VKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            +++ EWELD YSRPV+G DGKKLWEL++CDS G FR V  +PSNMVNSRE+R+ +E +IE AP   KP VIRFFRNAMFNM+ ++LK+++V V P R+T A++ W++ERE +VY  M G+   M+     F +R P  +PD L G++YAF+ +P S F  G +N +N G+ RL  LD S+P D  + G+ +++ RA+ +A W+  +E+ + KA+   R + LE GI+TQYL+A +   +R EAQ FE+ K  LGG HF+A+Q++  +D V GF+LL+E
Sbjct:   31 KISNEWELDVYSRPVVGADGKKLWELLICDSTGNFRHVSPIPSNMVNSREVRRTIEGVIEAAPGGSKPTVIRFFRNAMFNMIDIALKEVEVAVKPCRTTYAMYQWLEERERDVYPAMAGFKPTMKQP-AFFDIRTPTPLPDALRGEQYAFVTMPVSEFRQGNINDENVGVGRLCPLDASLPDDAMIPGLAMFTARAEPLATWMTGLEVAYFKADLKNRELALECGINTQYLVARVQGDQRKEAQGFEEAKRALGGFHFVAVQSNPDADDVAGFWLLKE 307          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_002290681.1 (predicted protein [Thalassiosira pseudonana CCMP1335] >EED92433.1 predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 276.9 bits (707), Expect = 8.400e-71
Identity = 149/347 (42.94%), Postives = 224/347 (64.55%), Query Frame = 0
Query:    8 WLVQLMVLATLLLPLQAFVPCRPPSHGPLQQKRQWGCGHSSLGSPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFG----LREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            W + L V+A  L   +AF     PS   + +      G +SL S  ++ ++++       + T  +++++EWELDCYSRPV+ +  KKLWE+++ DS G  +   A+PSN VNSRE+R++VE+II+++ VKP  IRFFR AMFNM++++L ++ V   PSR T AL  WI++R  +VY KM GY + M     + G    +R    +PD L G+KYAF+ LP + FL  G ++ +N G+ RL  +D ++  D  VQG+VI +PRAK++A+WLA  E+  +KA+  KR +V+E  ID QYLMA LND +R EA ++E+GK+ L G+HF+++Q DE  D   GF+LLRE
Sbjct:   16 WFIAL-VIACTLNSSRAFT---SPSSSTVGRTSNNLVGTTSLSSSTLISNSAI---NDVEETTNWDKVSEEWELDCYSRPVLVDGKKKLWEILMTDSSGNMKVCRALPSNKVNSREVRRVVEEIIDESEVKPSTIRFFRGAMFNMINIALSEIDVIAKPSRCTFALAQWIEDRNRDVYPKMEGYRATMSGIGGIGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFLPGGGIDNNNIGVGRLCPVDSTLAADSFVQGVVILTPRAKALASWLAGTEVAGLKADLRKRELVMETDIDNQYLMAKLNDDQRREAAVYEEGKDALNGLHFISVQKDEDDDPA-GFWLLRE 354          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_002179348.1 (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >EEC49171.1 predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 265.4 bits (677), Expect = 2.500e-67
Identity = 135/275 (49.09%), Postives = 189/275 (68.73%), Query Frame = 0
Query:   78 EWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSN--DVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            EWELDCYSRPV    GKKLWE+++ DS G FR  + +PSN VNS+ LR++V+ ++E A VKP  IRFFR AMFNM++++L +L V   PSR T AL SW+++R E VY +M G+++ M  S       +R P  +PD L G+KYAF+ LP + FL  G V+  N G+ R+  + + IP D  VQG+VI + RA+++A+WLA  E+  + A+  KR++V+E  IDTQYLMA LN+ +RVEA   E+GK  L G+HF+++Q +E SD   GF+LLRE
Sbjct:    1 EWELDCYSRPV-AVAGKKLWEVLITDSAGSFRFRQTLPSNQVNSKTLRQIVDDLMERADVKPNTIRFFRGAMFNMINIALMELPVTSKPSRCTFALASWLEDRHENVYPQMEGFNANMVGSTIPSFLDVRTPVRLPDALRGEKYAFVALPVAEFLPGGSVDATNIGVGRICTIPRDIPADAFVQGVVILTNRAEALASWLAGTEVVALTADLRKRVLVMETDIDTQYLMAKLNESQRVEAASLEEGKAGLKGLHFVSVQENEDSDPT-GFWLLRE 273          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: OEU21910.1 (DUF1092-domain-containing protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 258.1 bits (658), Expect = 4.100e-65
Identity = 131/292 (44.86%), Postives = 191/292 (65.41%), Query Frame = 0
Query:   73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPV--KPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDV-------FGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALDKSI-----PRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            ++ + +WELDCYSRPVI   GKKLWE+++ DS G FR V+ +PSN VNS+E+R+ VE ++ED+ +  KP  IRFFR AMFNM++++L +L V   PSR T ++  W++ER ++VY KM GY + M   + +         +R P  MPD L G+KYAF+ LP + FL  G++N +N G+ RL  +  S      P D  VQG+VI + R + +AAWLA  E+  + A+  KR ++++  IDT+YLMA L+D +R E   FE+GK+ L G+HF+ +Q DE  D   GF+L+RE
Sbjct:   40 KKTSDDWELDCYSRPVIAPGGKKLWEVLITDSTGSFRFVKTLPSNKVNSKEVRQTVEDLMEDSRIESKPSTIRFFRGAMFNMINIALSELDVVSRPSRGTYSIAQWLEERHKDVYPKMEGYQANMGVGSGLGAGVPSFLDVRTPVKMPDALRGEKYAFVALPLAEFLPGGDINDNNIGVGRLCTISDSFLEDLPPADTFVQGVVILTQRPEPLAAWLAGTEVASMSADLRKRNLIMDTDIDTRYLMARLDDNQREEGVAFEEGKDALNGLHFVCVQRDEDDDPA-GFWLMRE 330          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: GAX17579.1 (hypothetical protein FisN_18Lh230 [Fistulifera solaris])

HSP 1 Score: 256.5 bits (654), Expect = 1.200e-64
Identity = 136/289 (47.06%), Postives = 193/289 (66.78%), Query Frame = 0
Query:   73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAP-VKPRVIRFFRNAMFNMVSLSLKDL-KVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDS---NDVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFAL------DKSIPR-DKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLR 349
            + +  +WELDCYSRPVI   GKKLWE+++CDS   FR  + +PS+ VNS+ LR++VE+ +E  P  KP VIRFFR AMFNM++++LK+L  +   PSR T AL +W++ER   VY KM GY++QM ++        ++ P  +PD L G++YAF+ LP + FL  G VN D  G+ RL  L       +S+P  D  V G+V+ +PRAK++A WLA  EL  +KA+  KR +++E  +DTQYLMA LND +R E    E+ K++L G+HF+++Q DE SD  EGF+LLR
Sbjct:   80 DEVTDQWELDCYSRPVIQPGGKKLWEVLICDSGNTFRFRQELPSSQVNSKTLRQVVEQCVELVPTAKPSVIRFFRGAMFNMMNVALKELPDITAKPSRCTFALAAWLEERHATVYPKMEGYNAQMMNTATGASFLNVQTPVKLPDSLRGERYAFVSLPLAEFLPGGGVNDDTIGVGRLCPLPPALLWQQSLPAGDTFVSGVVLMTPRAKAMATWLAGTELMSLKADLRKRQLIMETDLDTQYLMARLNDEQRAEGAAMEQAKDQLQGLHFVSVQVDEESD-PEGFWLLR 367          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: GAX18017.1 (hypothetical protein FisN_18Hh230 [Fistulifera solaris])

HSP 1 Score: 255.4 bits (651), Expect = 2.600e-64
Identity = 134/284 (47.18%), Postives = 190/284 (66.90%), Query Frame = 0
Query:   73 ERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAP-VKPRVIRFFRNAMFNMVSLSLKDL-KVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDS---NDVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALD--KSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLR 349
            + +  +WELDCYSRPVI   GKKLWE+++CDS   FR  + +PS+ VNS+ LR++VE+ +E  P  KP VIRFFR AMFNM++++LK+L  +   PSR T AL +W++ER   VY +M GY++QM ++        ++ P  +PD L G++YAF+ LP + FL  G VN D  G+ RL  L   +    D  V G+V+ +PRAK++A WLA  EL  IKA+  KR +++E  +DTQYLMA LND +R E    E+ K++L G+HF+++Q DE SD  EGF+LLR
Sbjct:   75 DEVTDQWELDCYSRPVIQPGGKKLWEVLICDSGNSFRFRQELPSSQVNSKTLRQVVEQCVELVPTAKPSVIRFFRGAMFNMMNVALKELPDITAKPSRCTFALAAWLEERHATVYPQMEGYNAQMMNTAAGASFLNVQTPVKLPDSLRGERYAFVSLPLAEFLPGGGVNDDTIGVGRLCPLPPLQQSAGDTFVSGVVLLTPRAKAMATWLAGTELMSIKADLRKRQLIMETDLDTQYLMARLNDEQRAEGAAMEQAKDQLQGLHFVSVQVDEESD-PEGFWLLR 357          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: EJK69024.1 (hypothetical protein THAOC_09759, partial [Thalassiosira oceanica])

HSP 1 Score: 246.5 bits (628), Expect = 1.200e-61
Identity = 126/262 (48.09%), Postives = 178/262 (67.94%), Query Frame = 0
Query:   93 GKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFG----LREPEIMPDGLMGDKYAFMCLPASHFLD-GEVNYDNSGISRLFALDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            GKKLWE+++ DS G  R   ++PSN VNSRE+RK+VE +I ++ VKP  IRFFR AMFNM++++L ++ V   PSR T AL  W++ER  +VY +M GY +       V G    +R    +PD L G+KYAF+ LP + F++ G VN +N G+ RL  +D ++P D  VQG+VI + RAK++A+WLA  E+  IKA+  KR +V+E  ID QYLMA L+D +R EA  FE+GK+ L G+HF+++Q DE+ D   GF+LLRE
Sbjct:  117 GKKLWEILITDSSGNLRVCRSLPSNKVNSREVRKVVEDVIGESEVKPGTIRFFRGAMFNMINIALSEIDVVAKPSRCTFALAQWLEERNRDVYPQMEGYQAAKARLGGVGGTFLDIRTAVKLPDALRGEKYAFVGLPLAEFIEGGSVNNENIGVGRLCPVDSTLPADSFVQGVVILTSRAKALASWLAGTEVGGIKADIRKRELVMETDIDNQYLMAKLDDDQRREAANFEEGKDSLNGLHFVSVQEDENDDPA-GFWLLRE 377          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: KOO32085.1 (psab translation factor [Chrysochromulina sp. CCMP291])

HSP 1 Score: 244.2 bits (622), Expect = 6.100e-61
Identity = 128/275 (46.55%), Postives = 180/275 (65.45%), Query Frame = 0
Query:   79 WELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDL-KVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFGLREPEIMPDGLMGDKYAFMCLPASHFL-DGEVNYDNSGISRLFALD-KSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATL-NDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            W+LD YSRPV G DGKKLWEL+V D  G F+ VEA+PSN VNSRELR  V+++I++A V+P  IRFFR  M NM+S++L +L  V+  PSR T AL+ WI+ERE  VY  MPGY    +   D  GL+ P  +P+ L G++YA   LP + F+  G +  DN G   L  L    +  D  V G+VI+S R+K+IAAWL  ++L F+ A    R + +EVG+DTQYL+A +   ++  EA+ FE+ K   GG+HFL++Q+   ++  +GF+LLR+
Sbjct:   53 WQLDFYSRPVQGADGKKLWELLVTDETGAFKHVEAVPSNCVNSRELRSRVQRLIDEAEVRPSSIRFFRAQMKNMISIALNELPDVQCKPSRVTYALYDWIEERERTVYPSMPGY---RKPRPDPAGLKLPVKLPEQLRGEQYAVATLPYAEFIPGGSITEDNIGFGALCPLPAMELEPDNMVAGVVIFSRRSKAIAAWLTGLDLAFVSAVLESRELHIEVGLDTQYLLARMRTPIQTAEAETFEERKRATGGLHFLSIQSGPEAEQPDGFWLLRD 324          
BLAST of NO04G03220 vs. NCBI_GenBank
Match: XP_005715689.1 (unnamed protein product [Chondrus crispus] >CDF35870.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 236.1 bits (601), Expect = 1.700e-58
Identity = 123/294 (41.84%), Postives = 179/294 (60.88%), Query Frame = 0
Query:   63 STTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELMVCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMFNMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSNDVFG---LREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFA----LDKSIPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQYLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRE 350
            ST S       + +  WELD YSRPV+G DGKKLWEL++ D+   F  +EA+P++MVNSRELRK V+ +I+DA   PRVIRFFR  MFNM++++L ++ V+V PSR T ALF  + EREE VY KMPG+   +     VF    L   + +PD L  + ++F   P       E  +D +     F     +D S+P+D  V G+V++S RA  +AAW++  EL FI+A   ++ +  E G++T Y  A + D  + EA+ F+ GK    G+HFLA+QT   ++ ++G +LLRE
Sbjct:  101 STESLPIPFAPQTSDVWELDFYSRPVVGMDGKKLWELIITDTSAAFTHIEAIPNSMVNSRELRKRVQAVIDDAQNPPRVIRFFRTQMFNMINIALSEIDVQVAPSRKTYALFQLLKEREETVYVKMPGFQKSLTSQATVFSGIDLVVIQPLPDALRCESFSFGSFPLGQL---EEFFDTANSKDFFGDCCLVDPSVPKDTLVPGLVVFSRRAYPLAAWISGTELAFIRATLERQEIAFECGLNTVYKFAQITDDIQDEARTFQAGKANTAGLHFLAVQTSSDAEEIDGMWLLRE 391          
The following BLAST results are available for this feature:
BLAST of NO04G03220 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28702.11.800e-15380.40rna binding protein [Nannochloropsis gaditana][more]
CBJ25757.13.300e-7548.56conserved unknown protein [Ectocarpus siliculosus][more]
XP_002290681.18.400e-7142.94predicted protein [Thalassiosira pseudonana CCMP13... [more]
XP_002179348.12.500e-6749.09predicted protein, partial [Phaeodactylum tricornu... [more]
OEU21910.14.100e-6544.86DUF1092-domain-containing protein [Fragilariopsis ... [more]
GAX17579.11.200e-6447.06hypothetical protein FisN_18Lh230 [Fistulifera sol... [more]
GAX18017.12.600e-6447.18hypothetical protein FisN_18Hh230 [Fistulifera sol... [more]
EJK69024.11.200e-6148.09hypothetical protein THAOC_09759, partial [Thalass... [more]
KOO32085.16.100e-6146.55psab translation factor [Chrysochromulina sp. CCMP... [more]
XP_005715689.11.700e-5841.84unnamed protein product [Chondrus crispus] >CDF358... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009468NSK009468Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03220.1NO04G03220.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579065gene_2097Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g68gene1863Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03220.1NO04G03220.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03220 ID=NO04G03220|Name=NO04G03220|organism=Nannochloropsis oceanica|type=gene|length=1059bp
ATGTCGTCGCTTCTAGGCACATGGCTAGTGCAGTTGATGGTCTTGGCCAC
GCTGTTGCTACCCCTGCAGGCGTTCGTCCCTTGTCGTCCCCCGTCGCATG
GTCCCCTACAGCAGAAAAGGCAGTGGGGTTGTGGCCACAGCAGCCTCGGC
TCGCCGGAGGTCGTCGTGTCTGCGAGCCTGGAGCCATCTACCACGTCGCG
GCAAGACACGGTGAGGGAGCGGCTGGCCCAGGAATGGGAACTAGACTGCT
ATTCCAGGCCCGTCATTGGAGAGGACGGAAAAAAACTGTGGGAGCTGATG
GTGTGTGATTCCCTGGGGGAGTTCCGGGCCGTGGAAGCCATGCCTAGCAA
CATGGTCAACAGCCGGGAGCTGCGCAAGCTAGTAGAGAAGATCATTGAGG
ACGCACCTGTCAAGCCCCGAGTCATCCGCTTCTTCCGCAATGCCATGTTT
AACATGGTCAGCCTCTCTCTTAAGGATTTGAAAGTCCGCGTGGTGCCCAG
TCGATCTACGAACGCCCTCTTCAGCTGGATCGACGAGCGTGAGGAGGAGG
TCTACTCCAAAATGCCGGGCTATGACTCCCAGATGCGAGACTCGAACGAC
GTCTTTGGTCTGCGAGAGCCCGAGATCATGCCGGATGGCCTTATGGGGGA
TAAATACGCCTTCATGTGCCTTCCTGCCTCTCACTTTTTAGACGGTGAGG
TGAATTACGACAACAGCGGCATCTCCCGCCTCTTCGCGCTTGACAAGTCT
ATCCCCCGGGACAAGCAGGTGCAGGGCATTGTGATCTACAGCCCCCGTGC
CAAGTCCATTGCCGCCTGGTTGGCGAGCATGGAGCTGTGCTTTATCAAGG
CCAACTTCAGCAAGCGCATTATGGTCCTTGAGGTGGGCATCGATACCCAG
TATTTGATGGCCACACTAAACGACGTCAGACGCGTGGAGGCACAGATCTT
CGAGAAGGGAAAGGAGGAGCTGGGTGGTGTACATTTTTTGGCACTGCAAA
CGGACGAGAGTAGCGATGGTGTGGAGGGCTTCTTCTTGTTGCGTGAGCGC
AAACGTTAG
back to top

protein sequence of NO04G03220.1

>NO04G03220.1-protein ID=NO04G03220.1-protein|Name=NO04G03220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MSSLLGTWLVQLMVLATLLLPLQAFVPCRPPSHGPLQQKRQWGCGHSSLG
SPEVVVSASLEPSTTSRQDTVRERLAQEWELDCYSRPVIGEDGKKLWELM
VCDSLGEFRAVEAMPSNMVNSRELRKLVEKIIEDAPVKPRVIRFFRNAMF
NMVSLSLKDLKVRVVPSRSTNALFSWIDEREEEVYSKMPGYDSQMRDSND
VFGLREPEIMPDGLMGDKYAFMCLPASHFLDGEVNYDNSGISRLFALDKS
IPRDKQVQGIVIYSPRAKSIAAWLASMELCFIKANFSKRIMVLEVGIDTQ
YLMATLNDVRRVEAQIFEKGKEELGGVHFLALQTDESSDGVEGFFLLRER
KR*
back to top
Synonyms
Publications