NO04G03210, NO04G03210 (gene) Nannochloropsis oceanica

Overview
NameNO04G03210
Unique NameNO04G03210
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length500
Alignment locationchr4:897377..897876 +

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Properties
Property NameValue
DescriptionErg28 like protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:897377..897876 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005352Erg28
Homology
BLAST of NO04G03210 vs. NCBI_GenBank
Match: EWM28797.1 (erg28 like protein [Nannochloropsis gaditana])

HSP 1 Score: 162.2 bits (409), Expect = 1.200e-36
Identity = 93/165 (56.36%), Postives = 109/165 (66.06%), Query Frame = 0
Query:    1 MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIAT--------------------------------LSVLLLAAGYSYIVVEDGGSTK 134
            MK LLR+WLI VA LRVLSV+LGY  PATL +SVFG A  QVTPLTARTFG WTLLS+++TLMCALNIESGPLYRTTMASF +A+++F LE  +Y TVD+RSAM PFIIA+                                 S L++A  YS IVVED   +K
Sbjct:    1 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEFEMYRTVDMRSAMTPFIIASKLKSCASSIFDFPICVQESAYLSFTSGLNTTATSTLVMAIAYSSIVVEDTKKSK 165          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: XP_005855885.1 (erg28 like protein, partial [Nannochloropsis gaditana CCMP526] >EKU20478.1 erg28 like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 161.4 bits (407), Expect = 2.000e-36
Identity = 83/110 (75.45%), Postives = 95/110 (86.36%), Query Frame = 0
Query:    1 MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIA 111
            MK LLR+WLI VA LRVLSV+LGY  PATL +SVFG A  QVTPLTARTFG WTLLS+++TLMCALNIESGPLYRTTMASF +A+++F LEV +Y TVD+RSAM PFIIA
Sbjct:   13 MKTLLRIWLISVAFLRVLSVILGYFYPATLGESVFGRALSQVTPLTARTFGTWTLLSSVVTLMCALNIESGPLYRTTMASFVIAIVFFFLEVEMYRTVDMRSAMTPFIIA 122          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: XP_011396039.1 (putative ergosterol biosynthetic protein 28 [Auxenochlorella protothecoides] >KFM23169.1 putative ergosterol biosynthetic protein 28 [Auxenochlorella protothecoides])

HSP 1 Score: 97.8 bits (242), Expect = 2.700e-17
Identity = 54/119 (45.38%), Postives = 81/119 (68.07%), Query Frame = 0
Query:    5 LRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIATLSVLLLAAGYSY 124
            LR WL+ VA LR+L+VV+G+  P  L  +++      V  L  RTF +WTL S+++ L+CA N     +Y  T+ASFA+ALL+F+LE+ V+ T+D R A+ P I+AT+SVL + AG++Y
Sbjct:    7 LRRWLVFVALLRLLAVVIGFGSPDKLRTNLYNRKPFLVNDLQGRTFAVWTLTSSVLCLICARNPCVPSIYGATLASFAIALLHFLLELTVFGTLDWRGALQPGIVATVSVLWMGAGWNY 125          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: GAX77307.1 (hypothetical protein CEUSTIGMA_g4753.t1 [Chlamydomonas eustigma])

HSP 1 Score: 97.1 bits (240), Expect = 4.600e-17
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 0
Query:    8 WLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIATLSVLLLAAGYS 123
            WL+  ASLR+ SV +G+  P     ++F    + VT    R FG WTL++ ++ ++CA NI +  +Y  T+ SF +A LY VLE+ VY T+D+R A+ P ++A +S++ ++AGYS
Sbjct:   46 WLLIAASLRIFSVWIGFFSPVKFQIALFRRKPEVVTEAFGRLFGTWTLVTCLLCVICAFNINNEAIYGATLGSFVIAFLYMVLELAVYKTIDMRGAISPMLVAGISIVWMSAGYS 160          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: PSC67555.1 (hypothetical protein C2E20_8779 [Micractinium conductrix])

HSP 1 Score: 94.0 bits (232), Expect = 3.900e-16
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 0
Query:    5 LRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIATLSVLLLAAGYSY 124
            LR WL+ VA LR+ SVVLGY +P     +++    D VT L  R F  WTL S I+ L+CA N     +Y  T+ASF VALL+F++E+ ++ T+ ++ A+ P  +AT+S L +A G++Y
Sbjct:    7 LRRWLVFVALLRLFSVVLGYAEPQRFQTNLYNKQPDGVTDLAGRIFATWTLTSCILCLICARNPCVPAIYGATLASFLVALLHFLMELTLFQTMSLKFALQPMAVATISSLWMALGWNY 125          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: XP_002951951.1 (hypothetical protein VOLCADRAFT_105276 [Volvox carteri f. nagariensis] >EFJ47056.1 hypothetical protein VOLCADRAFT_105276 [Volvox carteri f. nagariensis])

HSP 1 Score: 91.7 bits (226), Expect = 1.900e-15
Identity = 53/129 (41.09%), Postives = 79/129 (61.24%), Query Frame = 0
Query:    5 LRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIATLSVLLLAAGYSYIVVEDGGSTK 134
            L+ WL+ VASLR+L+VV+G   P  L   VF    + V+ L  R F  WTL++  + L CA++  +  +Y TT+ SF VALL+F+ E+ VY TV +R A+ P IIA++S   L+ G+ +      GST+
Sbjct:   20 LKRWLVVVASLRMLAVVIGIFAPNKLKSQVFDRKPELVSNLLGRLFAAWTLMTCALCLACAMDPSNKTVYGTTLFSFVVALLFFLSELLVYKTVTIRGALSPMIIASISTAWLSLGWDFYT----GSTR 144          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: XP_001693446.1 (predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 86.3 bits (212), Expect = 8.100e-14
Identity = 47/119 (39.50%), Postives = 72/119 (60.50%), Query Frame = 0
Query:    5 LRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVRSAMPPFIIATLSVLLLAAGYSY 124
            L+ WL+ VA LR+L+VV+G   P  L   VF    + VTPL  R F  WTL++  + L CA +  +  +Y TT+ SFAVAL +F+ E+ ++ T+ +R A+ P I+A++S   L  G  +
Sbjct:    8 LQRWLVLVAGLRMLAVVIGIFAPNKLKSQVFDRRPELVTPLLGRLFATWTLMTCALCLACARDPSNKTVYLTTLFSFAVALAFFLGELLIFKTLSIRGAISPMIVASISTTWLTLGLDF 126          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: XP_006823047.1 (PREDICTED: probable ergosterol biosynthetic protein 28-like [Saccoglossus kowalevskii])

HSP 1 Score: 85.9 bits (211), Expect = 1.100e-13
Identity = 50/125 (40.00%), Postives = 78/125 (62.40%), Query Frame = 0
Query:    1 MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVR-SAMPPFIIATLSVLLLAAGYSYI 125
            M+++LR W+  VA + V + V  ++    LA  ++  A + V PL AR FG+WTLL+AI+    AL+I   P+Y  T+ SF +AL++FVLE  VY +  +    + P +++ LSV+L+  GYSYI
Sbjct:    6 MESILRGWIALVAMMAVGNTVQCFVDERFLANKLYTGAAESVNPLMARLFGVWTLLAAIVRFYGALHITIQPIYNLTLISFILALVHFVLESFVYKSAPMSIGVIAPLLVSGLSVILMVIGYSYI 130          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: OPJ83244.1 (putative ergosterol biosynthetic protein 28 [Patagioenas fasciata monilis])

HSP 1 Score: 84.3 bits (207), Expect = 3.100e-13
Identity = 45/134 (33.58%), Postives = 82/134 (61.19%), Query Frame = 0
Query:    3 NLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVR-SAMPPFIIATLSVLLLAAGYSYIVVEDGGSTKRR 136
            N+LR WL+ V+ +   + +  +   + L++ ++  +   V  L ARTFG+WTLLS++I  +CA++I +  LY  T+ +F +AL++F+ EV +YHT  +    M P ++A+ S+L +  G  Y+ VE+    K++
Sbjct:    6 NVLRSWLVMVSVIAAGNTLQSFRDHSFLSEKLYTTSPGLVNGLQARTFGVWTLLSSVIRCLCAIDIRNRTLYYITLFTFFLALVHFLSEVFIYHTAALTIGVMAPLMVASFSILGMLIGLQYLEVEELSQNKKK 139          
BLAST of NO04G03210 vs. NCBI_GenBank
Match: XP_014797503.1 (PREDICTED: probable ergosterol biosynthetic protein 28 [Calidris pugnax] >XP_014797504.1 PREDICTED: probable ergosterol biosynthetic protein 28 [Calidris pugnax])

HSP 1 Score: 83.6 bits (205), Expect = 5.300e-13
Identity = 45/134 (33.58%), Postives = 81/134 (60.45%), Query Frame = 0
Query:    3 NLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTFGIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDVR-SAMPPFIIATLSVLLLAAGYSYIVVEDGGSTKRR 136
            N+LR WL+ V+ +   + +  +     L++ ++  +   V  L ARTFG+WTLLS++I  +CA++I +  LY  T+ +F +AL++F+ EV +YHT  +    M P ++A+ S+L +  G  Y+ VE+    K++
Sbjct:    6 NVLRSWLVMVSVIAAGNTLQSFRDHRFLSEKLYTASPGLVNGLQARTFGVWTLLSSVIRCLCAIDIRNRTLYYITLFTFFLALVHFLSEVFIYHTAALTIGVMAPLMVASFSILGMLIGLQYLEVEELSQNKKK 139          
The following BLAST results are available for this feature:
BLAST of NO04G03210 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28797.11.200e-3656.36erg28 like protein [Nannochloropsis gaditana][more]
XP_005855885.12.000e-3675.45erg28 like protein, partial [Nannochloropsis gadit... [more]
XP_011396039.12.700e-1745.38putative ergosterol biosynthetic protein 28 [Auxen... [more]
GAX77307.14.600e-1740.00hypothetical protein CEUSTIGMA_g4753.t1 [Chlamydom... [more]
PSC67555.13.900e-1642.86hypothetical protein C2E20_8779 [Micractinium cond... [more]
XP_002951951.11.900e-1541.09hypothetical protein VOLCADRAFT_105276 [Volvox car... [more]
XP_001693446.18.100e-1439.50predicted protein [Chlamydomonas reinhardtii][more]
XP_006823047.11.100e-1340.00PREDICTED: probable ergosterol biosynthetic protei... [more]
OPJ83244.13.100e-1333.58putative ergosterol biosynthetic protein 28 [Patag... [more]
XP_014797503.15.300e-1333.58PREDICTED: probable ergosterol biosynthetic protei... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009466NSK009466Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03210.1NO04G03210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579061gene_2096Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g69gene1862Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03210.1NO04G03210.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03210 ID=NO04G03210|Name=NO04G03210|organism=Nannochloropsis oceanica|type=gene|length=500bp
ATGAAGAACCTATTGCGTGTCTGGCTCATTTGCGTCGCGTCCCTCCGCGT
CCTCTCTGTCGTCTTAGGCTACTTGCAGCCAGCCACGCTAGCTAAGAGCG
TCTTCGGACTGGCCACGGATCAAGTAACCCCGCTCACAGCACGGACTTTT
GGCATTTGGACCTTGCTCTCCGCAATTATCACCCTGATGTGTGCTTTAAA
CATCGAGTCAGGGCCCTTGTACCGTACCACGATGGCTTCATTCGCCGTGG
CCCTGCTCTACTTCGTCCTCGAGGTCGGTGTCTACCACACGGTCGACGTC
CGCTCGGCAATGCCGCCCTTCATCATCGCCAgtaagttaccagagggaat
cgtgtttcattcctcgcacttctccttcctgatactgatattcgtaatgc
ccctctttgattcgtgtcaacagCACTATCAGTCCTCTTGCTGGCGGCGG
GCTATTCATATATTGTTGTGGAGGATGGCGGAAGCACGAAAAGAAGGTAA
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protein sequence of NO04G03210.1

>NO04G03210.1-protein ID=NO04G03210.1-protein|Name=NO04G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MKNLLRVWLICVASLRVLSVVLGYLQPATLAKSVFGLATDQVTPLTARTF
GIWTLLSAIITLMCALNIESGPLYRTTMASFAVALLYFVLEVGVYHTVDV
RSAMPPFIIATLSVLLLAAGYSYIVVEDGGSTKRR*
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Synonyms
Publications