NO04G03120, NO04G03120 (gene) Nannochloropsis oceanica

Overview
NameNO04G03120
Unique NameNO04G03120
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length693
Alignment locationchr4:854264..854956 +

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Properties
Property NameValue
DescriptionPhospholipid-transporting ATPase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:854264..854956 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0000287magnesium ion binding
GO:0004012phospholipid-translocating ATPase activity
GO:0005488binding
Vocabulary: Biological Process
TermDefinition
GO:0015914phospholipid transport
Vocabulary: INTERPRO
TermDefinition
IPR036412HAD-like_sf
IPR026871PLip_transp_ATPase
IPR006539P-type_ATPase_IV
Homology
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: EWM22623.1 (phospholipid-transporting atpase [Nannochloropsis gaditana])

HSP 1 Score: 93.2 bits (230), Expect = 1.100e-15
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 0 
Query:    5 VADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQL-TSGASVDIEAGLARLYKAV 93
            VAD +ERD+++VG TAIEDKLQ+GV DTIADL  GGIK  VLTG K+ETAINI YSC++L     LL+L  +G    I   L +L  A+
Sbjct:  661 VADEIERDLVVVGTTAIEDKLQEGVPDTIADLLDGGIKVWVLTGDKMETAINIGYSCRLLSSRMTLLKLKDTGDPATIRRHLKKLLNAL 749
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: ORZ40601.1 (hypothetical protein BCR44DRAFT_1176750 [Catenaria anguillulae PL171])

HSP 1 Score: 92.0 bits (227), Expect = 2.500e-15
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTD 95
            + K A+ +E+D++++G TAIEDKLQDGV +TIA LA  GIK  VLTG + ETAINI YSCK+L ED  LL +      + +A L R  K V D
Sbjct:  625 LDKAAEMIEKDLVLLGATAIEDKLQDGVPETIATLAMAGIKIWVLTGDRQETAINIGYSCKLLTEDMNLLTINYDTYPETKAELERQLKQVRD 717
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BLAST of NO04G03120 vs. NCBI_GenBank
Match: KNG46406.1 (phospholipid-transporting atpase [Stemphylium lycopersici])

HSP 1 Score: 91.3 bits (225), Expect = 4.300e-15
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSAE 102
            + K A+ +ERDM ++G TAIEDKLQDGV DTIA L + GIK  VLTG + ETAINI  SCK++ ED  LL +      D    + + Y+AVT +    AE
Sbjct:  838 LDKAAELIERDMTLLGATAIEDKLQDGVPDTIATLQSAGIKVWVLTGDRQETAINIGMSCKLISEDMSLLIINEENKEDTRDNIRKKYQAVTSQSQGGAE 937
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: ODQ72927.1 (hypothetical protein LIPSTDRAFT_52894 [Lipomyces starkeyi NRRL Y-11557])

HSP 1 Score: 90.5 bits (223), Expect = 7.300e-15
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSAE 102
            + K AD +E+DM ++G TAIEDKLQDGV DTI  L T GIK  VLTG + ETAINI  SCK+L ED  LL +   +  D ++ +     A+   KG SAE
Sbjct:  765 LDKAADLIEKDMFLLGATAIEDKLQDGVPDTIHTLQTAGIKIWVLTGDRQETAINIGMSCKLLSEDMSLLVVNEESKEDAQSNIKSKLSAI---KGQSAE 861
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: CUS22560.1 (LAQU0S06e00826g1_1 [Lachancea quebecensis])

HSP 1 Score: 89.0 bits (219), Expect = 2.100e-14
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLRED-QLLLQLTSGASVD-----IEAGLARLYKAVTDKKGMSAEFYEAK-TKPSRRP 114
            M KVAD++ER++ ++G TAIED+LQDGV D+IA L   GIK  VLTG K+ETAINI +SC +L  D +LL+  TSG  VD      E   + + K + DK G+S    E +  K   RP
Sbjct:  973 MEKVADSIERNLTLLGGTAIEDRLQDGVPDSIAILGEAGIKLWVLTGDKVETAINIGFSCNLLNSDMELLVIKTSGDDVDEVGSPYEIVNSMITKHLNDKFGLSGSLDELEAAKSEHRP 1091
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: ORY36357.1 (phospholipid-translocating P-type ATPase [Rhizoclosmatium globosum])

HSP 1 Score: 88.6 bits (218), Expect = 2.800e-14
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLL 72
            + KVA+ +E+D+I++G TAIEDKLQDGV DTI  LAT GIK  VLTG + ETAINI YSCK+L ED  L+
Sbjct:  617 LDKVAEMIEKDLILLGATAIEDKLQDGVPDTIHTLATAGIKLWVLTGDRQETAINIGYSCKLLTEDMSLI 686
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: ORX91371.1 (phospholipid-transporting ATPase [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 88.2 bits (217), Expect = 3.600e-14
Identity = 50/96 (52.08%), Postives = 62/96 (64.58%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLA-RLYKAVTDKK 97
            + K A+ +E+D+ ++G TAIEDKLQDGV  TI  LA  GIK  +LTG + ETAINI YSCK+L ED  LL     + VD E  L  RLY   + KK
Sbjct:  615 LDKAAEIIEKDLFLLGATAIEDKLQDGVPTTIHTLAQAGIKIWILTGDRQETAINIGYSCKLLTEDMRLLVFDQESHVDFEKELTERLYAIQSAKK 710
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: EFQ93777.1 (hypothetical protein PTT_08728 [Pyrenophora teres f. teres 0-1])

HSP 1 Score: 87.8 bits (216), Expect = 4.800e-14
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSAE 102
            + K A+ +E DM ++G TAIEDKLQDGV DTIA L + GIK  VLTG + ETAINI  SCK++ ED  LL +      D +  + + ++A+T +    AE
Sbjct:  827 LDKAAELIEHDMTLLGATAIEDKLQDGVPDTIATLQSAGIKVWVLTGDRQETAINIGMSCKLISEDMSLLIINEENKEDTKDNIRKKFQAITSQSQGGAE 926
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: EMD93063.1 (hypothetical protein COCHEDRAFT_115406 [Bipolaris maydis C5])

HSP 1 Score: 87.8 bits (216), Expect = 4.800e-14
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSAE 102
            + K A+ +ERDM ++G TAIEDKLQDGV DTIA L + GIK  VLTG + ETAINI  SCK++ ED  LL +           + + Y+A+T +    AE
Sbjct:  777 LDKAAELIERDMTLLGATAIEDKLQDGVPDTIATLQSAGIKVWVLTGDRQETAINIGMSCKLISEDMSLLIINEENKEATRDNIRKKYQAITSQSQGGAE 876
[Close]
BLAST of NO04G03120 vs. NCBI_GenBank
Match: XP_014078457.1 (hypothetical protein COCC4DRAFT_169706 [Bipolaris maydis ATCC 48331] >ENI04548.1 hypothetical protein COCC4DRAFT_169706 [Bipolaris maydis ATCC 48331])

HSP 1 Score: 87.8 bits (216), Expect = 4.800e-14
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 0 
Query:    2 MSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVKLETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSAE 102
            + K A+ +ERDM ++G TAIEDKLQDGV DTIA L + GIK  VLTG + ETAINI  SCK++ ED  LL +           + + Y+A+T +    AE
Sbjct:  782 LDKAAELIERDMTLLGATAIEDKLQDGVPDTIATLQSAGIKVWVLTGDRQETAINIGMSCKLISEDMSLLIINEENKEATRDNIRKKYQAITSQSQGGAE 881
The following BLAST results are available for this feature:
BLAST of NO04G03120 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM22623.11.100e-1557.30phospholipid-transporting atpase [Nannochloropsis ... [more]
ORZ40601.12.500e-1552.69hypothetical protein BCR44DRAFT_1176750 [Catenaria... [more]
KNG46406.14.300e-1550.00phospholipid-transporting atpase [Stemphylium lyco... [more]
ODQ72927.17.300e-1551.00hypothetical protein LIPSTDRAFT_52894 [Lipomyces s... [more]
CUS22560.12.100e-1447.90LAQU0S06e00826g1_1 [Lachancea quebecensis][more]
ORY36357.12.800e-1464.29phospholipid-translocating P-type ATPase [Rhizoclo... [more]
ORX91371.13.600e-1452.08phospholipid-transporting ATPase [Basidiobolus mer... [more]
EFQ93777.14.800e-1447.00hypothetical protein PTT_08728 [Pyrenophora teres ... [more]
EMD93063.14.800e-1448.00hypothetical protein COCHEDRAFT_115406 [Bipolaris ... [more]
XP_014078457.14.800e-1448.00hypothetical protein COCC4DRAFT_169706 [Bipolaris ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL076nonsL076Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR106ngnoR106Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G03120.1NO04G03120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G03120.1NO04G03120.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G03120 ID=NO04G03120|Name=NO04G03120|organism=Nannochloropsis oceanica|type=gene|length=693bp
ATGATGAGCAAGGTTGCAGACAACTTGGAGAGGGACATGATCATTGTGGG
GCTAACGGCCATAGAGGACAAGCTCCAGGACGGCGTATCCGACACGATTG
CCGATTTGGCCACGGGCGGCATCAAGTTCTGTGTACTGACAGGTGTCAAG
CTGGAGACCGCCATCAACATTGATTACTCCTGCAAGGTGCTCCGAGAAGA
TCAGCTTTTGCTGCAGCTTACTTCGGGCGCCTCGGTTGATATCGAGGCGG
GCCTGGCACGTCTGTACAAGGCCGTGACTGACAAGAAGGGGATGAGCGCC
GAGTTCTACGAAGCCAAGACCAAGCCAAGCAGACGGCCGGCCATTCAGAG
CTGTTCCAATCACCGGCATCGCGCCAAGGATGTGGCGTCGGCGTGGGACG
TCATGCTTAAGCACTATCCCAACTTGCCCACGTTGTTGAATGCAGCCGCC
TTGCACAATCATAACAGGTCCATATCGGGCGTTTATTTGTCTCCATCCCG
GCGGCGCTTGTCACAAGCTTCCTTCTCTATTAGCCTAGGTCCTGTCGTGC
CTGCGGCGCCAGCTATCATCCCCAACAACCGTCCTATTCACGTTCGCTTC
ACCCAGGCAGCGGAGAGCATAATGGTGGGCAAGAAACATTCTCCACAGCG
TCCTCATCCTCAGTATGAACTGGCGCCTCTTGTTCGAGCTTAA
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protein sequence of NO04G03120.1

>NO04G03120.1-protein ID=NO04G03120.1-protein|Name=NO04G03120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=231bp
MMSKVADNLERDMIIVGLTAIEDKLQDGVSDTIADLATGGIKFCVLTGVK
LETAINIDYSCKVLREDQLLLQLTSGASVDIEAGLARLYKAVTDKKGMSA
EFYEAKTKPSRRPAIQSCSNHRHRAKDVASAWDVMLKHYPNLPTLLNAAA
LHNHNRSISGVYLSPSRRRLSQASFSISLGPVVPAAPAIIPNNRPIHVRF
TQAAESIMVGKKHSPQRPHPQYELAPLVRA*
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Synonyms
Publications