NO04G02930, NO04G02930 (gene) Nannochloropsis oceanica

Overview
NameNO04G02930
Unique NameNO04G02930
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3605
Alignment locationchr4:775990..779594 -

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Properties
Property NameValue
DescriptionWd40 subgroup
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:775990..779594 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR036322WD40_repeat_dom_sf
IPR017986WD40_repeat_dom
IPR001680WD40_repeat
Homology
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BLAST of NO04G02930 vs. NCBI_GenBank
Match: XP_005854971.1 (wd40 subgroup, partial [Nannochloropsis gaditana CCMP526] >EKU21382.1 wd40 subgroup, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 688.0 bits (1774), Expect = 3.200e-194
Identity = 339/459 (73.86%), Postives = 385/459 (83.88%), Query Frame = 0 
Query:  101 VGRENSWATQAPGDDDWSMDTPRIHYLREMEKLGQELYDMTGFKTEGAADLQNLVISSPLAPAQAHHMPFPPPSRAALAAASEHEKAVREIVMQEETRRQEVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMVGLASALDGQELFRAPAHAALVTALDYDANSGWMISAADDGVVKVF----RDLGGEGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYAIGSPPRK 556
            +GREN WATQAPG+DDW MDTPRIHYLREMEKLGQE++D+TG  + GAA++Q LV+S+P APAQ       P  +    AASE  K  RE+ +QEE RRQ V++ E CA NWREEP + RPVG VPGNRKVQQVKLS DR++YGSDAG VGLASA DG+ELFRA AHAALVTALDYDA +GWM+SAADDGVVKVF    R++GG GG  RVE+ G GMRHHS+RVV AE+LDH WGL+ASMDGKI +FEL+GGALVQEMWASDTLLA +VCK YVFAGL+GGPVEAFSIRNGGRSAFRYIAQRTPVRSLC +PLAGN+IRVVVGGQDGALRQF VR VMS+EGVW+VP DR+FDDRL+LVCNTHVD DTREVDQGF+L GH+ PVVAVACDE+KVVSASEDGSVIVWDAAKS+PR+ +R HVDGDLVGAVDFNERYLV            +A+G PPR+
Sbjct:    1 MGRENVWATQAPGEDDWCMDTPRIHYLREMEKLGQEVHDLTGLGSGGAAEVQGLVVSTPWAPAQPFQPSSVPFPQVPPGAASEQAKTAREVALQEELRRQ-VVMAEGCAMNWREEPAFCRPVGHVPGNRKVQQVKLSEDRVMYGSDAGAVGLASASDGRELFRAQAHAALVTALDYDAGTGWMVSAADDGVVKVFREQEREVGGAGGG-RVESGGPGMRHHSSRVVAAEVLDHRWGLSASMDGKIVVFELDGGALVQEMWASDTLLAVTVCKNYVFAGLLGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCAYPLAGNHIRVVVGGQDGALRQFQVRAVMSSEGVWRVPQDRAFDDRLVLVCNTHVDPDTREVDQGFVLTGHRGPVVAVACDEEKVVSASEDGSVIVWDAAKSSPRFTVRAHVDGDLVGAVDFNERYLVXXXXXXXXXXXXFAVGHPPRR 457
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BLAST of NO04G02930 vs. NCBI_GenBank
Match: CBJ33516.1 (F-box domain containing protein [Ectocarpus siliculosus])

HSP 1 Score: 89.4 bits (220), Expect = 5.000e-14
Identity = 69/279 (24.73%), Postives = 122/279 (43.73%), Query Frame = 0 
Query:  269 ALVTALDYDANSGWMISAADDGVVKVFRDLGGEGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDY 548
            +L+ AL +D +   +++   D  V+V R+      + ++      +  H+ R+     LD     T+S DG + ++++  G  + ++            +GY+  GL  G V A+  +   R+    +       ++ T      ++ ++ GG DG ++ + +    + EG        S+         THV             +GH APV AV CDE +VVSA+ DG+V VWD       + I  H DG  VG++ F+   LV DGT   + + D+
Sbjct:    7 SLLPALYFDGD--LLVTGGSDKTVRVQRNSRDCLEKEQLGECLHVLEGHTERITGVARLDGSRLATSSADGSLRVWDVSSGETLHDVLLPSPACCLGAAEGYMVTGLTDGRVLAWEAKRPERAPTEILTLDAHRGAVTTLSFPKQDV-LLTGGGDGRVKYWDLNQGGAAEGNRFEIGGESY---------THV------------FRGHAAPVTAVQCDEHRVVSAATDGTVSVWDIRSGQELFQIYGHADG--VGSLQFDREQLVTDGTGETLYLHDF 259
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BLAST of NO04G02930 vs. NCBI_GenBank
Match: XP_009035319.1 (hypothetical protein AURANDRAFT_62485 [Aureococcus anophagefferens] >EGB10532.1 hypothetical protein AURANDRAFT_62485 [Aureococcus anophagefferens])

HSP 1 Score: 69.7 bits (169), Expect = 4.100e-8
Identity = 61/245 (24.90%), Postives = 99/245 (40.41%), Query Frame = 0 
Query:  314 MRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSL-------CTFPLAGNNIR---VVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYA 549
            ++ H  RV   + L     L+AS+D ++ ++++  G           +   +V  G    GL+ G V A+ I  G  +     A    VRSL         F   G +     +  GG DG +R + ++P     G      D +                 R   +   L+GH   +VA+  D+ K+VSAS DG+V  WD       + +  H     + ++ F    LV DGT G V+V D++
Sbjct:  281 LKGHGARVTGVKALGDDAILSASLDRRLLLWDVADGRHRVVAECRSPICCLAVADGVAVVGLLDGAVVAYDIDTGRVNFELAGAHEGAVRSLHFEAEAEDVFSREGRSAAGRLLCTGGSDGVVRCYTMQPAADGGGFEPRKPDGAAAXXXXXXXAVSAVYRERRCGK-HALEGHGGAIVALQADDAKLVSASIDGTVRCWDLKSGDQLFKLDGH--SRHINSLHFQGDLLVADGTQGTVIVHDFS 522
[Close]
BLAST of NO04G02930 vs. NCBI_GenBank
Match: XP_005711229.1 (unnamed protein product [Chondrus crispus] >CDF40935.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 65.5 bits (158), Expect = 7.800e-7
Identity = 89/357 (24.93%), Postives = 147/357 (41.18%), Query Frame = 0 
Query:  198 RRQEVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMVGLASALDGQELFRAPAHAALVTALDYDANSGWMISA-ADDGVVKVFRDLGGEGGRM------RVEAVGGGMRHHSNRV------VTAEILD--HHWGLTASMDGKIAIFELEGGALVQEMWASDTLLAASVC-KGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRTPVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFDDRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSVIVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGT 539
            R +EV+   + A NWR   + +  V  V  +  V+++    D ++ G+ +G V  +  + G+ +     H   VTA+ Y     +M+SA A D  V V++    E   +      R EAV G +     R+      ++A  LD  +    +AS+DG + +  L+ G  +  +   + +L+ ++  KGY+  G   G V A+    G    F  ++      +            +V G   G L+            VW      SF+D  +L                  L  H+A V++V  D  KVVS+S DGSV V+  A     Y I        +GA  F++  L+ DGT
Sbjct:  105 RDKEVIRDRTIARNWRSGQYDASVVAAVTRD-YVRKLSFQDDFLVMGTASGGVVFSDLVSGRRVTCRHVHTGQVTAIHY--RDSYMVSAGASDCEVAVWQTERYEKRSLWDELDARGEAVDGVLTLPKVRIKTHIDQISALRLDVKNSRVYSASIDGTVRVSHLDTGEELSMIRVGEPVLSMTLTEKGYLLLGSTSGRVLAYQAERG----FHLLSMVCHNSNTTALAFWEETQVLVTGDAAGNLK------------VW------SFNDSTLL----------------GTLPKHEAAVMSVQIDGSKVVSSSRDGSVAVFGLASRQRLYSIVGFT--KYLGAATFDDVRLIADGT 418
The following BLAST results are available for this feature:
BLAST of NO04G02930 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 4
Match NameE-valueIdentityDescription
XP_005854971.13.200e-19473.86wd40 subgroup, partial [Nannochloropsis gaditana C... [more]
CBJ33516.15.000e-1424.73F-box domain containing protein [Ectocarpus silicu... [more]
XP_009035319.14.100e-824.90hypothetical protein AURANDRAFT_62485 [Aureococcus... [more]
XP_005711229.17.800e-724.93unnamed protein product [Chondrus crispus] >CDF409... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009524NSK009524Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02930.1NO04G02930.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578914gene_2064Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02930.1NO04G02930.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02930 ID=NO04G02930|Name=NO04G02930|organism=Nannochloropsis oceanica|type=gene|length=3605bp
TGGTGGGTGTGGTGTGGCACTTGCTTCATCTACGCGGTAGGCGAAAGCCG
AGCGCACAAACCTCCTCTCGCTTTACGTTTGGCGCCATCGCGCCTTCGAG
AACGACGTCGTGTGAAAATGGGCACTCCCGACTTTGCCTTGGGAGGCACG
TCACCACAAGTGCGCGGCAAAGCACTGGTCTTACGCAGTCGATGGCTCAA
TGCTCCACAGCTTTAAGGATGATGTGCCTGTAGGCACTGGGGGCGTATGC
ATTTAGGCGTCAAATGAGAATTTGTTAAGGCTTCTGATGATGGACGAGTC
CCAACAGCGCGTCACTGAGATGTGTGTTCCGCGTCTCTGGTCGGGCAAGA
CAGAGCTCAACAAGTTTGGTAGAGACATAGCAACACAGAGGCATGGCCTC
TACTCAGAGTGGTCGTGGCTTTGCGGTCTCATGGCATCAAATGGCGCCTT
CCGGCGTATTTTGGCTTTCGTTTCACCTTCTTTCCTTCCACTTGCCGGAA
CATGGCCGGCCAACTCACCACTTCACAACCCTCACAACATAACCAACCAC
ACGTACACAGGCAATTGATCAGCCCCACATCCACAAGTACAAATTAGCCC
AGGAAATCAGCTAGACGCCCGCTGACCGACGACGACGCTCCTTCAGATGA
AAATGCAGGGCACAAGAAAGGGCGGGGGGGGCGCTAAAACTCATGTCATG
TGTACCGCCGCGACCTTCATACTGCTTGCGGGGAGCGCCCAGAGTTTTAT
GGCGGCACCCGCGTCCCTCATGCATTCCTTTTTGCAGGAGTCATCAGCGG
TGAGCCGGCAGACGCTGGGGGCGAGAGTCACGACCGGAACAGCAGCAGGT
GCAGGACGAAAGCGGCGGTCGCTGACCCTCGCTGCCCGGGGTAGCGAGGA
ATGGGAGAATGCCAGTGGTGGCAACAGCGGTAGCAGTGGAAATGACGTGG
GTCGAGAAAACTCATGGGCCACGCAAGCTCCCGGAGATGACGATTGGTCG
ATGGACACGCCGCGTATTCATTACTTGCGGGAGATGGAGAAGCTAGGGCA
AGAATTGTACGACATGACAGGCTTCAAAACGGAGGGTGCAGCAGACTTAC
AGAACCTGGTGATTTCTAGCCCGTTAGCGCCCGCTCAGGCTCATCACATG
CCGTTTCCGCCGCCCTCGCGGGCAGCGCTTGCGGCGGCATCAGAACACGA
GAAGGCTGTGCGAGAGATTGTGATGCAAGAAGAGACGCGTCGACAAGAGG
TGTTGGTCGGGGAGAGCTGCGCGACTAATTGGCGGGAAGAGCCGTTTTAT
AGCCGCCCCGTCGGATTTGTCCCCGGAAATAGGAAGGTACAGCAGGTGAA
GCTGTCCGGAGATCGGATCTTGTATGGCTCAGATGCGGGGATGGTGGGCC
TGGCAAGTGCGCTAGATGGTCAAGAGTTATTCCGCGCCCCCGCTCATGCT
GCACTGGTGACGGCATTGGACTATGATGCGAATAGTGGATGGATGATTTC
TGCAGCGGACGATGGGGTTGTAAAGGTCTTCCGAGATCTTGGGGGGGAGG
GAGGACGGATGAGAGTTGAGGCTGTTGGGGGGGGGATGCGGCATCATTCG
AACAGGGTGGTTACGGCGGAGATATTGGATCATCATTGGGGTTTAACGGC
GTCGATGGATGGAAAGATTGCCATTTTTGAGTTGGAGGGGGGGGCACTAG
TGCAGGAGATGTGGGCGTCGGACACTTTGTTGGCGGCGAGTGTGTGCAAG
GGGTATGTGTTCGCAGGGCTGATGGGTGGCCCTGTTGAGGCGTTTTCGAT
CCGTAACGGTGGGAGGTCAGCGTTTAGGTATATTGCGCAACGAACGCCGG
TGCGGTCTTTGTGCACTTTTCCTTTGGCGGGGAATAACATCAGGGTGGTA
GTGGGGGGACAAGACGGGGCGCTGAGACAGTTCCATGTTAGGCCGGTCAT
GTCGACGGAGGGGGTGTGGAAGGTGCCGAGCGATCGGTCGTTCGATGACC
GGTTGATCCTTGTGTGCAACACGCATGTGGATCAAGATACGAGGGAAGTA
GACCAGGGGTTTATGTTGAAGGGGCATAAGGCGCCGGTGGTGGCAGTGGC
GTGCGATGAGGACAAGGTGGTGAGTGCCTCTGAGGACGGGTCGGTCATTG
TGTGGGATGCGGCGAAATCCACCCCGAGGTACGTTATTCGTCGGCATGTC
GATGGGGATTTGGTCGGGGCAGTTGATTTCAATGAGCGCTATTTGGTGTA
CGATGGCACGCCTGGAAAAGTCATGGTCTGGGACTACGCAATTGGATCCC
CTCCTCGCAAGGCCTCCGGGAGCTCTGCTGGTGGCGCTGCTGCGTCTGGC
CTCGGTGGCCTTGGTAATGATGGCAAGTCTCGGCGCTCCTCTTCTCCTGG
TGCAAGGGGATCGCGCGGGAGTGGTGGGGGGCAGCATCGACGTTCTCGCC
CTTCGTCTCCGTCCTCCTCTTCTTTTCCGTCGCGCAAGGATGGAGCCCCT
CATCAGCGGCAAGGCGGCCCTCCCTCCCCCTCTGACGACTCTGCGAGTGG
CGGGCCTCGTCAGAATTCTCCATTTCTTGGTGGGTGGATCCTGGGCCATG
GTCCTACTGATTTGGAAGGTGTTGGTGGGGTGGGCATGGGTGGCGTGCAT
AAGCAGCAAGAGCCCGCAGCCGATTTCTCCTCCGCCGATGGCGTCGTTGA
TCAAGGGGAAGACAGCAACAATGCTGCGGCCTCAGAGGAGAGTAAAGAGA
AGGGCCAAGAAGGGGAAGGGTCCGCGTAAAGAGGAATCCCAGGCCTTGTG
TAACATGTGATTTTGTGATTTATGCTTCCTTCTCCAGCCATCGCGGCCCT
CTTTCTCCTCTCTCCTTTGCAAATAACCCACTCCGCTACATACGTTGTAC
ATTTGTGTCTCATTGTGTTATAATATGAAAAGTACTTTTGCCATGTCCCC
CCACTACCCACCCAGTCTTTTCGTCCCCTCCCTTTTATTTTTGGAGGGGG
TTGGTGGCAGGAAAAAAGAGGGAGAAGTAGAAGATAAATACAAATGAAAG
GAACAAGAAGAAGACAGGAAAAGGAGAAAATGAAAGGGATAGTGCTGGCA
ATGACACACACAAGCAAGGCAATAATTTGACCTGGCAAAGGAAGGCATGG
GAAGCGAGTTGCAGAATCCGAAGAAGGAAACTCAAGACGCATCTATGGTA
TCTATCCAAACAGAGAGAGACGGGGAGGTCGCTCAATGACAGGAAGGAAG
AGACAGACATCCAGCAGCAGGACACTATTTACCATATACTCGTGCCCGCG
TGTTTTTGCTGTGTACCTGTTAAGAAGAGAGTGAAGAGAGGAAAAGAAAT
AATCTATACTTGGACAGGCAGGGAGAAGACGAACGAAAGGGGGGAGGGAG
GAAACAAAGGTGGGCAGCAAGCGCCCGTTTGTAAATAGGGAAGGAAAAGA
CATAATGCTTCTCCTCATCCTTTTCACCTCGCTATTATTACTGTTAAAAA
GATAGACGGACAAAAAATGAAGGAATGCGCAGTTGTTCAGTACAGGGCTT
AGCGAAGCAGACACAAACGCAAACAAAGAAGAAATCAAACAGCTAGGCGG
TGAGA
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protein sequence of NO04G02930.1

>NO04G02930.1-protein ID=NO04G02930.1-protein|Name=NO04G02930.1|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MKMQGTRKGGGGAKTHVMCTAATFILLAGSAQSFMAAPASLMHSFLQESS
AVSRQTLGARVTTGTAAGAGRKRRSLTLAARGSEEWENASGGNSGSSGND
VGRENSWATQAPGDDDWSMDTPRIHYLREMEKLGQELYDMTGFKTEGAAD
LQNLVISSPLAPAQAHHMPFPPPSRAALAAASEHEKAVREIVMQEETRRQ
EVLVGESCATNWREEPFYSRPVGFVPGNRKVQQVKLSGDRILYGSDAGMV
GLASALDGQELFRAPAHAALVTALDYDANSGWMISAADDGVVKVFRDLGG
EGGRMRVEAVGGGMRHHSNRVVTAEILDHHWGLTASMDGKIAIFELEGGA
LVQEMWASDTLLAASVCKGYVFAGLMGGPVEAFSIRNGGRSAFRYIAQRT
PVRSLCTFPLAGNNIRVVVGGQDGALRQFHVRPVMSTEGVWKVPSDRSFD
DRLILVCNTHVDQDTREVDQGFMLKGHKAPVVAVACDEDKVVSASEDGSV
IVWDAAKSTPRYVIRRHVDGDLVGAVDFNERYLVYDGTPGKVMVWDYAIG
SPPRKASGSSAGGAAASGLGGLGNDGKSRRSSSPGARGSRGSGGGQHRRS
RPSSPSSSSFPSRKDGAPHQRQGGPPSPSDDSASGGPRQNSPFLGGWILG
HGPTDLEGVGGVGMGGVHKQQEPAADFSSADGVVDQGEDSNNAAASEESK
EKGQEGEGSA*
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Synonyms
Publications