NO04G02790, NO04G02790 (gene) Nannochloropsis oceanica

Overview
NameNO04G02790
Unique NameNO04G02790
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1919
Alignment locationchr4:736996..738914 +

Link to JBrowse

Properties
Property NameValue
DescriptionGlycoside hydrolase-type carbohydrate-binding protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:736996..738914 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0030246carbohydrate binding
GO:0003824catalytic activity
GO:0016853isomerase activity
GO:0030246carbohydrate binding
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR011013Gal_mutarotase_SF_dom
IPR008183Aldose_1/G6P_1-epimerase
Homology
BLAST of NO04G02790 vs. NCBI_GenBank
Match: EWM28801.1 (Glycoside hydrolase-type carbohydrate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 499.6 bits (1285), Expect = 8.100e-138
Identity = 242/298 (81.21%), Postives = 270/298 (90.60%), Query Frame = 0
Query:   52 MLKRSL-AFALVGVSVANAFFM-APAPRASATTMLAGKATLDTLDRVVLTDDATGHSATVHLHGGCITSYKAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEW 348
            MLK +L A   V  S+++AF + A + R SAT ++AGKATLDTL RVVLTDD TGHSATVHLHGGC+TSYKAPHEVLGIR DA FTG KPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQS +EPEVTLVLKESAE+RKIWDQAFEL LTVRLEGDH+LTRLTAKNTG TPW+FTSALHSYYSVSD++KTTIIG  L+G+TFVDKTQ+P VSAPL +SE+G+TKFLEGV+PDYKGPMALHDKA RVRTTVEHV+GW+DY+LWAPVGNDGMGYK FVC+ESGAVS+PV+V GGSEW
Sbjct:    1 MLKYALIAILAVMGSLSDAFLLPATSSRESATALMAGKATLDTLKRVVLTDDVTGHSATVHLHGGCVTSYKAPHEVLGIRKDAAFTGEKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSDSEPEVTLVLKESAETRKIWDQAFELLLTVRLEGDHLLTRLTAKNTGSTPWEFTSALHSYYSVSDVAKTTIIGNDLAGRTFVDKTQNPHVSAPLQSSEVGVTKFLEGVVPDYKGPMALHDKAGRVRTTVEHVRGWSDYVLWAPVGNDGMGYKKFVCLESGAVSRPVSVAGGSEW 298          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: XP_005782405.1 (hypothetical protein EMIHUDRAFT_434460 [Emiliania huxleyi CCMP1516] >EOD29976.1 hypothetical protein EMIHUDRAFT_434460 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 219.9 bits (559), Expect = 1.200e-53
Identity = 111/260 (42.69%), Postives = 153/260 (58.85%), Query Frame = 0
Query:   95 RVVLTDDATGHSATVHLHGGCITSY-KAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            + V   +A G S TV+  G CITSY K   +VL +R DA   G+KPI+GG+  CWPQFGPGAIQQHGFARNL W V  QS  + +V + L ESA +  +W  AF+L  +V LE D + T     NT   P  FT ALH+Y+S  DI K  I   + +G T++DK Q P       +  + I   ++ V     G + L + A     T+++  GW+D ++W+P G++GMGYK+FVCVES   + PV +E G  W G M++
Sbjct:   15 KTVSLSNAAGDSVTVYTFGACITSYVKGGTDVLAVRPDAKLDGSKPISGGIPFCWPQFGPGAIQQHGFARNLDWTVVEQS--DSKVVMELTESAYTMDMWPHAFKLQYSVTLEDDRLATDFCVTNTDSKPLSFTGALHTYWSCDDIDKVAIKAPAFAGATYLDKMQSPPADVKSASDTISIGAPVDSVYAGVSGDVVL-EGAHASPLTIKNSVGWSDTVVWSPYGDEGMGYKNFVCVESAQAATPVKLEPGEYWTGAMEV 271          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: XP_005757053.1 (hypothetical protein EMIHUDRAFT_446641 [Emiliania huxleyi CCMP1516] >EOD04624.1 hypothetical protein EMIHUDRAFT_446641 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 219.2 bits (557), Expect = 2.100e-53
Identity = 115/278 (41.37%), Postives = 162/278 (58.27%), Query Frame = 0
Query:   79 SATTMLAGKA--TLDTLDRVVLTDDATGHSATVHLHGGCITSY-KAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            S+  M+A  A   +++  + V   +A G S TV+  G CITSY K   +VL +R DA   G+KPI+GG+  CWPQFGPGAIQQHGFARNL W V  QS  + +V + L ESA +  +W  AF+L  +V LE D + T     NT   P  FT ALH+Y+S  DI K  I   + +G T++DK Q P       +  + I   ++ V     G + L + A     T+++  GW+D ++W+P G++GMGYK+FVCVES   + PV +E G  W G M++
Sbjct:   10 SSLRMVAAPAPELVESALKTVSLSNAAGDSVTVYTFGACITSYVKGGTDVLAVRPDAKLDGSKPISGGIPFCWPQFGPGAIQQHGFARNLDWTVVEQS--DSKVVMELTESAYTMDMWPHAFKLQYSVTLEDDRLATDFCVTNTDSKPLSFTGALHTYWSCDDIDKVAIKAPAFAGATYLDKMQSPPADVKSASDTISIGAPVDSVYAGVSGDVVL-EGAHASPLTIKNSVGWSDTVVWSPYGDEGMGYKNFVCVESAQAATPVKLEPGEYWTGAMEV 284          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: XP_005835949.1 (hypothetical protein GUITHDRAFT_105052 [Guillardia theta CCMP2712] >EKX48969.1 hypothetical protein GUITHDRAFT_105052 [Guillardia theta CCMP2712])

HSP 1 Score: 209.1 bits (531), Expect = 2.200e-50
Identity = 104/255 (40.78%), Postives = 148/255 (58.04%), Query Frame = 0
Query:  103 TGHSATVHLHGGCITSYKAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPW---EVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRT-TVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            +G SATV+  G  +TSYKAPHEVL +R DA F G+KPI+GG+  C+PQFGPG IQQHGFARNL W   +VSA     P VTL L E+ E+  +W   F+    V L+ + +   L   NT   PWDF +ALH+Y++VS+I K  + G +  G   +++   P          +   K ++       G + L D+ +  ++ T+ ++ GW D +LW P GN+GMGYK+F CVES   +KP  +  G  W+  + I
Sbjct:  296 SGSSATVYPFGATVTSYKAPHEVLFVRPDAKFDGSKPISGGIPHCFPQFGPGKIQQHGFARNLVWNVKDVSADEPDMPSVTLELTETEETMAMWPNKFKCTYVVGLDEEKLNCELRVTNTDSKPWDFQAALHTYFAVSNIDKCEVRG-AFKGSEHLNRMDKPPSKTKESREAIRFDKEVDSCYEGVSGQVVLFDEVKPEQSVTIRNLAGWEDTVLWNPYGNEGMGYKNFACVESVKAAKPAVLAAGETWISRVSI 549          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: GAX29070.1 (hypothetical protein FisN_7Hh338 [Fistulifera solaris])

HSP 1 Score: 205.7 bits (522), Expect = 2.400e-49
Identity = 108/254 (42.52%), Postives = 154/254 (60.63%), Query Frame = 0
Query:  103 TGHSATVHLHGGCITSY-KAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKG--PMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            +G S+ V+L+G C+TSY +   E + +R DA   G+KPI+GGL  CWPQFGPGAIQQHGFARN+ W V+  SMT+  V LV++ S  ++++WD+ F+   TV L+ D + T++  +N G   +DF +ALHSY++VS + K  I G S +GK F++K         +   +  +    E     YKG     L D        V + KGW D ++W+P GN+GMGY +FVCVES     PVT+ GG  WVG+M +
Sbjct:  116 SGSSSQVYLYGACVTSYIQDGTEFIAVRPDAKMDGSKPISGGLSHCWPQFGPGAIQQHGFARNVNWSVA--SMTDSSVELVMEPSDYTKEMWDKQFKCTFTVTLQEDQLDTKMWVENKGDDSFDFQAALHSYFAVSSLDKLEISG-SFAGKEFLNKLVGD--GGEMQTEDREVITISEEYDRVYKGVNDPVLKDAGTGKSLAVLNTKGWADTVIWSPYGNEGMGYNNFVCVES-VKFDPVTLNGGETWVGDMSL 363          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: CBJ30610.1 (conserved carbohydrate binding protein [Ectocarpus siliculosus])

HSP 1 Score: 202.2 bits (513), Expect = 2.700e-48
Identity = 114/303 (37.62%), Postives = 167/303 (55.12%), Query Frame = 0
Query:   58 AFALVGVSVAN-AFFMAPAPRASATTMLAGKATLDT-----LDRVVLTDDATGHSATVHLHGGCITSYKA-PHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            AF  +G+ + + A F  P P   A  M +  A + T          LT  +   SA V   GGC+TS+K   ++ L +R DA+  G+KPI+GGL  C+PQFGPG IQQHGF RNL WEV     T+  V+L L ++ E+  +W   FE    V L+G  + T L   NTG   +DF +ALHSY+  SDI+K TI    L G ++++K +DP  +     ++M I++ ++ V     G ++++D        V + +GW D ++W P GN+GMG  +FVCVES  V     +  G  W G+MK+
Sbjct:    8 AFGFLGLQLTDVAGFHVPVPVQQAHNMRSTPARMATEGTNESGLKKLTISSGDASAEVFTLGGCVTSFKVKDYDYLFVRPDAMMDGSKPISGGLPHCFPQFGPGVIQQHGFGRNLEWEVVGS--TDDSVSLKLSDNEETMAMWPHPFECVYKVALDGTTLQTELAVTNTGSEDFDFQAALHSYFRCSDINKVTISSPKLDGASYLNKMKDPPATETFSGTKMTISEEVDQVFKGVTGDVSINDAGNSRVLVVSNTEGWADTVIWNPYGNEGMGADNFVCVESAQVGGE-KLAAGKTWTGKMKL 307          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: GAX16605.1 (hypothetical protein FisN_7Lh338 [Fistulifera solaris])

HSP 1 Score: 200.7 bits (509), Expect = 7.800e-48
Identity = 112/285 (39.30%), Postives = 163/285 (57.19%), Query Frame = 0
Query:   72 MAPAPRASATTMLAGKATLDTLDRVVLTDDATGHSATVHLHGGCITSY-KAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPM--ALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            MA   + + T   +G  T +     V     +G S+ V+L+G C+TSY +   E + +R DA   G+KPI+GGL  CWPQFGPGAIQQHGFARN+ W V+  SMT+  V LV++ S  ++++WD+ F+   TV L+ D + T++  +N G   +DF +ALHSY++VS + K  I G S +GK F++K         +   +  +    E     YKG +   L D        V + KGW D ++W+P GN+ MGY +FVCVES     PVT+  G  WVG+M +
Sbjct:   54 MAQVEKKAVTKSASGLQTNEGGLEYVQLVHPSGSSSKVYLYGACVTSYIQDGTEFIAVRPDAKMDGSKPISGGLSHCWPQFGPGAIQQHGFARNVIWSVA--SMTDSSVELVMEPSDYTKEMWDKPFKCTFTVTLQEDQLDTKMWVENKGDDSFDFQAALHSYFAVSSLDKLEISG-SFAGKEFLNKLVGD--GGEMQTEDREVITISEEYDRVYKGVIDPVLKDAGTGKSLAVLNTKGWADTVIWSPYGNEAMGYNNFVCVES-VKFDPVTLNSGETWVGDMSL 332          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: XP_002286728.1 (aldose-1-epimerase, partial [Thalassiosira pseudonana CCMP1335] >EED96369.1 aldose-1-epimerase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 194.5 bits (493), Expect = 5.600e-46
Identity = 107/274 (39.05%), Postives = 157/274 (57.30%), Query Frame = 0
Query:   81 TTMLAGKATLDTLDRVVLTDDATGHSATVHLHGGCITSY-KAPHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            T   AG  T D     V   +A G ++ ++L+GG +TSY K   E + +R DA   G+KPI+GGL  CWPQFGPG IQQHGFARN+ W V  +SM +    L +  S  ++++WD+ F    +V LE D + T++  +N G+  +DF +ALHSY++VS +   +I G S +GK F++K              + I++  + V      P+ L DK      +V +  G+ D +LW P GN+GMGY +FVCVES     PVT+ GG+ W G+M +
Sbjct:    6 TASSAGLMTNDDGLEYVRLSNAAGDTSDIYLYGGVVTSYVKGGQEYIAVRPDAKMDGSKPISGGLSHCWPQFGPGEIQQHGFARNVNWTV--KSMDDTSCVLEMAPSDYTKEMWDKEFLCTFSVNLEDDQLSTKMFVENKGEESFDFQAALHSYFTVSALENLSIAG-SFAGKEFLNKMVGDGEMQTEERDVITISEEYDRVYTGVNDPV-LQDKGTGKSLSVLNTAGYEDTVLWNPYGNEGMGYNNFVCVES-VKFDPVTLAGGASWTGDMAL 274          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: XP_009039041.1 (hypothetical protein AURANDRAFT_4661, partial [Aureococcus anophagefferens] >EGB06166.1 hypothetical protein AURANDRAFT_4661, partial [Aureococcus anophagefferens])

HSP 1 Score: 193.0 bits (489), Expect = 1.600e-45
Identity = 106/254 (41.73%), Postives = 152/254 (59.84%), Query Frame = 0
Query:   97 VLTDDATGHSATVHLHGGCITSYK--APHEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGK-TPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEW 348
            V  +  +G SA   ++G  +TSYK  +  E + +R DA   G+KPI+GGL  C+PQFGPGAIQQHGFARN+ W++     +   VT  L  SA +R++WD+ F +   V L    + T++T  NTG    +DF +ALHSY+ VSDI+ T+I G S  GKTF+DK QDP          + + +  + V      P+ L DK +    T+++  GW D +LW+P G++GMGYK+F+CVES A   PV++  G  W
Sbjct:    1 VALEHESGASAKAFVYGADVTSYKDASGTEWIAVRPDAKMDGSKPISGGLSHCFPQFGPGAIQQHGFARNVDWDIVKTEGS--SVTFRLAPSAYTREMWDEPFVVDFEVALSAASLDTKMTVTNTGSGDSFDFQAALHSYFDVSDINATSIAG-SFKGKTFLDKMQDPPKETKETRDVITVGEEYDRVYKGSNDPV-LKDKGKGKALTIDNKAGWKDTVLWSPYGDEGMGYKNFLCVESVAFD-PVSLAAGENW 249          
BLAST of NO04G02790 vs. NCBI_GenBank
Match: XP_005834711.1 (hypothetical protein GUITHDRAFT_151947 [Guillardia theta CCMP2712] >EKX47731.1 hypothetical protein GUITHDRAFT_151947 [Guillardia theta CCMP2712])

HSP 1 Score: 192.6 bits (488), Expect = 2.100e-45
Identity = 109/315 (34.60%), Postives = 162/315 (51.43%), Query Frame = 0
Query:   53 LKRSLAFALVGVSVANAFFMAPAPRASATTMLAGKATLDTLDRVVLTDDATGHSATVHLHGGCITSYKAP-HEVLGIRADAVFTGAKPIAGGLQICWPQFGPGAIQQHGFARNLPW---EVSAQSMTEPEVTLVLKESA----------ESRKIWDQAFELYLTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLSGKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRTTVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGEMKI 354
            ++R  A  +V   V +  F+     A A  M+         D V LT+  T    +++ +G C+TSYK P ++V  +R DAV  G+KPI+GG+ IC+PQFGPG IQQHGFARN+ W   +V  ++         L+E +          E+RK+W  +F     + L   ++   L  +N GK  + FT ALH+Y++V DI K  I G    GK ++DKT  P         E+ I+ F E +  D    + L D  + V   +   +GW D  +W P G + MGYK+FVC+E G + +PV +  G  WV  + I
Sbjct:   49 IRRRKATGIVASFVPDKEFLKKQESAQADAMI-------LRDPVKLTNTITKEEVSIYKNGACVTSYKTPDYDVFFVRPDAVLDGSKPISGGVPICFPQFGPGEIQQHGFARNMKWVCVDVREENAAGSRSLSWLREGSRAIYELVPNNETRKMWPNSFNCRYQIDLNSGNLNLELRVQNKGKKAFSFTGALHTYFAVDDIDKIAIQG-GFKGKKYLDKTLSPPAEKTETEDELRISSFTERIYSDCTDDIRLKDGDKEV--VIRSSQGWKDIAIWNPYGEEKMGYKNFVCIEHGVICEPVVLNPGDVWVSSVDI 353          
The following BLAST results are available for this feature:
BLAST of NO04G02790 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28801.18.100e-13881.21Glycoside hydrolase-type carbohydrate-binding prot... [more]
XP_005782405.11.200e-5342.69hypothetical protein EMIHUDRAFT_434460 [Emiliania ... [more]
XP_005757053.12.100e-5341.37hypothetical protein EMIHUDRAFT_446641 [Emiliania ... [more]
XP_005835949.12.200e-5040.78hypothetical protein GUITHDRAFT_105052 [Guillardia... [more]
GAX29070.12.400e-4942.52hypothetical protein FisN_7Hh338 [Fistulifera sola... [more]
CBJ30610.12.700e-4837.62conserved carbohydrate binding protein [Ectocarpus... [more]
GAX16605.17.800e-4839.30hypothetical protein FisN_7Lh338 [Fistulifera sola... [more]
XP_002286728.15.600e-4639.05aldose-1-epimerase, partial [Thalassiosira pseudon... [more]
XP_009039041.11.600e-4541.73hypothetical protein AURANDRAFT_4661, partial [Aur... [more]
XP_005834711.12.100e-4534.60hypothetical protein GUITHDRAFT_151947 [Guillardia... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009537NSK009537Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02790.1NO04G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|292230gene_2051Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g7gene1926Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02790.1NO04G02790.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02790 ID=NO04G02790|Name=NO04G02790|organism=Nannochloropsis oceanica|type=gene|length=1919bp
CTGCGTGCTTTGGGATGGGGCGTGTGGGGCGTATGGGACTCACCTGCGAG
GCCTTGATTTTGCTTCTTTGGGAGGCGGGAGCTTGACCCCACGATTCGGT
ATGTCTTCAATGCCTGAGAGCACCAGGCGTAATTGCCGTTCCAACGAGGC
AGCCAGAACTGAGAGATCGCCTGCTGAGGCTCTCTCGCCTCGATTTCATG
CGCCGACGGCCTCCTCGCTTGGGCAGTCATGGCTGCATGAACAGCTCATT
GAAATTTTCAGGGCTTTTTTCGAACCACATGGCATGTGTGGCAAAAGAAT
GCCTTGAAGCCGCCAACAGGCGCCTGCGACGGAGCGTATGATTCAGCGAC
GATGCCGAGCCAAAACCCATGCATGTTGCAGTGCGCTTTCCAGTCCTCCA
CCCGCGAGAGGATTTTCAGCGCATTGAGTCAGTCATTCATGTAACAGATG
GTGTTTGTGTTCATCGAGGGAGTTCGGGTTCTTGCCTGGGGAAGTGCAGG
CAGGAGGTTGTTGGGTACGACAGGGCCAACACTCTTTCATGCCTATTTAC
TAGCCTGTCTTCTCCCTCAATACCCAACACAACCACAGGGTCCGGTTGCC
ATGCTCAAGCGCAGTCTCGCCTTTGCCCTGGTTGGCGTCAGCGTTGCCAA
TGCCTTCTTTATGGCTCCGGCTCCCCGCGCGTCCGCCACGACCATGTTGG
CTGGCAAAGCCACGCTCGACACGCTTGACCGTGTGGTCCTCACAGACGAC
GCCACGGGGCATTCCGCCACGGTTCATCTCCACGGCGGCTGTATCACCAG
CTACAAGGCCCCTCACGAGGTACTGGGCATTCGAGCGGACGCCGTCTTCA
CCGGGGCTAAGCCCATTGCCGGTGGCCTGCAAATTTGCTGGCCTCAGTTT
GGTCCCGGTGCCATCCAGgtacgattcgatctcccttgtgacgagatatt
agctccctctttcaccttttcagcctcatcacactggctctgctactttg
ctgtcctcgtctctttcctgcccatcagctccaccctctccacacctatc
cctccttcactaccccaacgcacagCAACACGGATTCGCCCGCAACCTGC
CCTGGGAGGTGTCCGCACAGTCTATGACCGAGCCCGAGGTGACATTGGTT
TTGAAAGAATCGGCGGAATCTCGCAAGATTTGGGACCAGGCCTTCGAGCT
TTATTTGACCGTCCGTCTGGAGGGCGACCACATGCTGACTCGGTTGACGG
CCAAGAACACGGGGAAGACTCCATGGGATTTCACGAGCGCGTTGCACAGT
TACTATAGCGTGTCGGATATAAGCAAAACAACAATTATTGGCACTAGTTT
GTCAGGAAAAACTTTTGTAGACAAGACCCAGGACCCCTTTGTGTCTGCGC
CGTTGCCGGCATCGGAAATGGGAATAACGAAGTTTTTGGAAGGTGTCATT
CCGGACTATAAAGGCCCCATGGCGCTGCATGACAAGGCGCGGCGAGTCCG
CACGACGGTGGAGCATGTGAAGGGATGGAATGATTATATTTTGTGGGCCC
CGGTGGGGAATGATGGCATGGGGTACAAGAGCTTTGTGTGCGTAGAGAGC
GGGGCAGTCTCCAAGCCGGTAACGGTCGAGGGTGGGTCGGAGTGGGTGGG
GGAGATGAAGATTAGTTCCAGGGCGGGCTGAATGCAGCTGGAACAGGAGT
TGATTGAGGGAAAGATATTGGTCTAGGAGTGGAGAGAGGACTGACGCTGA
TACTGGTGGGAGTTTTTTTGCTGTAGGACCATGCCTCAGTATAGTAAAAA
GGGAAAAAGAGGTGGACCTCGCTTTTCATCATGCAACCTGTTTTGCTTCC
AACATCTGCAAGTCCAGTAGGAGCACAGGGTAAAAACGAGGACAACAAAA
ACGTGATAATCCGAAATCA
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protein sequence of NO04G02790.1

>NO04G02790.1-protein ID=NO04G02790.1-protein|Name=NO04G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MVFVFIEGVRVLAWGSAGRRLLGTTGPTLFHAYLLACLLPQYPTQPQGPV
AMLKRSLAFALVGVSVANAFFMAPAPRASATTMLAGKATLDTLDRVVLTD
DATGHSATVHLHGGCITSYKAPHEVLGIRADAVFTGAKPIAGGLQICWPQ
FGPGAIQQHGFARNLPWEVSAQSMTEPEVTLVLKESAESRKIWDQAFELY
LTVRLEGDHMLTRLTAKNTGKTPWDFTSALHSYYSVSDISKTTIIGTSLS
GKTFVDKTQDPFVSAPLPASEMGITKFLEGVIPDYKGPMALHDKARRVRT
TVEHVKGWNDYILWAPVGNDGMGYKSFVCVESGAVSKPVTVEGGSEWVGE
MKISSRAG*
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Synonyms
Publications