NO04G02750, NO04G02750 (gene) Nannochloropsis oceanica

Overview
NameNO04G02750
Unique NameNO04G02750
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1241
Alignment locationchr4:729214..730454 +

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Properties
Property NameValue
DescriptionMpv17/PMP22
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:729214..730454 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22
Homology
BLAST of NO04G02750 vs. NCBI_GenBank
Match: EWM28728.1 (Mpv17/PMP22 [Nannochloropsis gaditana])

HSP 1 Score: 384.4 bits (986), Expect = 2.800e-103
Identity = 219/256 (85.55%), Postives = 235/256 (91.80%), Query Frame = 0
Query:    1 MRVALALVASLAVTEAYFKPLAPRQAPKLFSQAKSSVVPALSHGGIGGNGGNNDDLWGGWNXXXXXXXXXXXXXXXXXXGGLGMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            MRVA+AL+ SLA+ EAYF+PLAPR AP L S +K SV  +LSHGGI G    NDD+WGGWN XXXXXXXXXXXXXXXXX  LG+LWDKYNEVL+++PLPTKAVTSLVGFTIGDLLAQ+FLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEK PKKDA TVA+KVLIDQVLWAP+FTVIFFAWIE+LQG+GLQKIK KINQDLVRGVTASWKVWPLVHVINFRFIP QQRLLYINTIQIGYNVFLSMLASR
Sbjct:    1 MRVAVALLGSLALGEAYFRPLAPR-AP-LSSFSKCSVAQSLSHGGI-GXXXXNDDVWGGWN-XXXXXXXXXXXXXXXXXXXLGLLWDKYNEVLDTNPLPTKAVTSLVGFTIGDLLAQSFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKFPKKDAQTVAIKVLIDQVLWAPVFTVIFFAWIEVLQGAGLQKIKQKINQDLVRGVTASWKVWPLVHVINFRFIPPQQRLLYINTIQIGYNVFLSMLASR 252          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: EWM28134.1 (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 222.6 bits (566), Expect = 1.400e-54
Identity = 104/175 (59.43%), Postives = 131/175 (74.86%), Query Frame = 0
Query:   82 LGMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            L +LW  YN++L+  PL TKA+TS VGF++GDLLAQ F+ +K   +D+KRLL+LA FGL VHGP GH+FYG LD K+P   A TVA KV IDQ+LW PIF  +FF W+ L +G  L+ IK +I +DL   V  SW VWP+ H INFRFIP+ QRLLYIN++QIGYN+FLS LA+R
Sbjct:  101 LQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFI-DKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANR 274          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: XP_005707552.1 (peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria] >EME31032.1 peroxisomal membrane MPV17/PMP22-like protein [Galdieria sulphuraria])

HSP 1 Score: 206.1 bits (523), Expect = 1.300e-49
Identity = 96/171 (56.14%), Postives = 125/171 (73.10%), Query Frame = 0
Query:   86 WDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            W +YN++LES PL TK++TSL+GF +GD+LAQ FL   G  L + RLLR+A FG  +HGP GH FY  LD+ +P  +A  VA KV IDQVLWAPIF +IFF ++ +L+    ++ +AK+ QD    + ASWKVWPL H INFRFIPS QRLLYIN +QI YNVFLS++ ++
Sbjct:  111 WMRYNQLLESRPLLTKSLTSLIGFILGDILAQKFLSSDGI-LHLDRLLRMALFGFLIHGPTGHIFYTQLDKAIPGTEAWKVACKVAIDQVLWAPIFALIFFGFLAVLERQSFKQFEAKLRQDWKTAIFASWKVWPLAHAINFRFIPSHQRLLYINAVQIFYNVFLSIIGNK 280          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: CBN79193.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 204.5 bits (519), Expect = 3.900e-49
Identity = 97/176 (55.11%), Postives = 117/176 (66.48%), Query Frame = 0
Query:   81 GLGMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            G G  WD YN  L   P+  KA TS VGF+IGD LAQ   G         RL R+A+FG   HG + HFFY ALD  LP   A TV  KV+IDQV WAPIFT+IFF WI +  G+   +I AK+  DLV+GV  SW VWPL H INF+F+P++QRLLYIN+IQI YNVFLS++ S+
Sbjct:  122 GAGGAWDAYNSALADKPILVKACTSFVGFSIGDFLAQK--GTSKESFSYARLARMAAFGFLFHGTISHFFYNALDSALPGTAAMTVIQKVIIDQVFWAPIFTLIFFTWIGVTSGASPSEIVAKVKSDLVQGVVGSWTVWPLAHTINFKFVPTEQRLLYINSIQIFYNVFLSIIGSK 295          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: EWM26132.1 (mpv17-like protein [Nannochloropsis gaditana] >EWM26133.1 mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 202.2 bits (513), Expect = 1.900e-48
Identity = 100/177 (56.50%), Postives = 122/177 (68.93%), Query Frame = 0
Query:   83 GMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFL---GEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            G LW +YN  LE +PL  KA+TSL GFTIGD+LAQ F+    EKG   D+ R +RL SFG  VHGP GHFFYG LD+++P     TVA KV IDQ+LW P F V+FF+++ L +G     I+AKI  DL   V  SW VW   H INFRF+PS QRLLYIN+IQIGYN+FLS L ++
Sbjct:    3 GRLWSQYNVALEKNPLLIKALTSLTGFTIGDVLAQKFVTPDEEKG--YDLMRTVRLGSFGFLVHGPTGHFFYGWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFTDIQAKIKNDLATAVVGSWTVWIPAHFINFRFVPSNQRLLYINSIQIGYNIFLSFLGNK 177          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: NP_001090480.1 (uncharacterized protein LOC779393 [Xenopus laevis] >AAI23161.1 MGC154358 protein [Xenopus laevis])

HSP 1 Score: 200.7 bits (509), Expect = 5.600e-48
Identity = 95/175 (54.29%), Postives = 120/175 (68.57%), Query Frame = 0
Query:   83 GMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNF-LGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            G LW KYN  LE++PL  KAVTSL GFT+GD+LAQ F + +K    D+ R +RL SFG  VHGP GH+FY  LD+++P     TVA KV IDQ+LW P F V+FF+++ L +G     I+ KI  DL   V  SW VW   H +NFRF+PS QRLLYIN+IQIGYN+FLS L ++
Sbjct:    3 GRLWTKYNAALETNPLLIKAVTSLTGFTLGDILAQKFVMPDKEKGYDLMRTVRLGSFGFLVHGPTGHYFYSWLDKQIPGTAMKTVATKVAIDQLLWNPCFGVMFFSYLGLAEGKSFADIQTKIKNDLTTAVVGSWTVWIPAHFVNFRFVPSSQRLLYINSIQIGYNIFLSFLGNK 177          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: XP_005776476.1 (putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516] >EOD24047.1 putative peroxisomal membrane protein [Emiliania huxleyi CCMP1516])

HSP 1 Score: 199.1 bits (505), Expect = 1.600e-47
Identity = 96/171 (56.14%), Postives = 120/171 (70.18%), Query Frame = 0
Query:   86 WDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            W KYNE+L+  PL  KA TS +GF IGD+LAQ F+ ++    D  RL RLASFG  VHG   H+FYG LD  +P K A  V  KV IDQVLW PI  ++FF+++  L+  GLQ +  K   +L+R VT SWKVWPL H INFRFIPS QR+LYIN+IQIGYN FLS++++R
Sbjct:  100 WKKYNELLDEKPLLMKAFTSFLGFAIGDILAQIFIQKQ--DFDWYRLFRLASFGFLVHGTSSHWFYGMLDSAIPGKGAQPVFTKVFIDQVLWNPILGIMFFSYVACLEWKGLQYVIDKTRNELLRQVTGSWKVWPLAHAINFRFIPSSQRVLYINSIQIGYNCFLSLISNR 268          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: CBJ27540.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 198.4 bits (503), Expect = 2.800e-47
Identity = 97/176 (55.11%), Postives = 120/176 (68.18%), Query Frame = 0
Query:   81 GLGMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            GLG++W  Y  +L S PL TK++TS+ GF +GDLLAQ F+ +K   +D+ RLL+LASFG  +HG  GHFFY  LD K+P   A TVA KV IDQVLW PIF  +FF ++  + G G   I  KI  +L   V  SW VWP+ H INFR IP+ QRLLYINTIQI YN FLS++A R
Sbjct:  122 GLGVIWAAYMSLLASQPLLTKSLTSMTGFALGDLLAQKFI-DKKEEIDLPRLLKLASFGALIHGSSGHFFYNFLDSKIPGTAALTVAKKVFIDQVLWNPIFGCMFFGYMGAVDGMGPSGISEKIKNNLWTSVKGSWTVWPVAHAINFRMIPTSQRLLYINTIQIFYNCFLSVIAQR 296          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: OEU19890.1 (hypothetical protein FRACYDRAFT_206674 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46
Identity = 88/177 (49.72%), Postives = 121/177 (68.36%), Query Frame = 0
Query:   80 GGLGMLWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            GG    W  YN+ L++SPL  KA TSLVG+ +GD+LAQ F+   G P DVKR + L++FGL  HGP GH+FY  LD+K+P KD  +VA K+LIDQ LW P+F  +FF ++ L+ G     I  KI  DL      SWKVWP+VH INF+FI S+ R+L++N +Q+ +N+FLS++ S+
Sbjct:   59 GGAVPGWASYNKALDTSPLTAKACTSLVGWALGDVLAQIFI--SGGPFDVKRFVTLSAFGLLYHGPSGHYFYNWLDDKIPGKDGLSVAKKILIDQTLWCPLFMTVFFTYLGLVSGDSFGTIGTKIKTDLFAACQGSWKVWPVVHFINFKFISSKHRILFLNVVQVAFNMFLSLIGSK 233          
BLAST of NO04G02750 vs. NCBI_GenBank
Match: OEU20060.1 (hypothetical protein FRACYDRAFT_167937 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 196.1 bits (497), Expect = 1.400e-46
Identity = 90/172 (52.33%), Postives = 111/172 (64.53%), Query Frame = 0
Query:   85 LWDKYNEVLESSPLPTKAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFFYGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKIKAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFLSMLASR 257
            LW +YN++L++ PL TK  TSL GFT+GD+LAQ F+     P DV R +RL SFG   HG  GH+FYG LD KLP     TVA KV+IDQ +W PIF   FF ++  ++G        K+N DL   V  SW VW   H INF F+P  QRLLYINTIQIGYN+FLS L ++
Sbjct:    4 LWARYNKLLDAQPLLTKCFTSLTGFTVGDILAQKFVEPSDKPYDVMRTVRLGSFGFLFHGSTGHYFYGLLDSKLPGTKPVTVATKVIIDQTIWNPIFGCAFFGYLNAVEGKSWNDYTKKLNADLKTAVMGSWAVWVPAHTINFAFVPPAQRLLYINTIQIGYNIFLSFLGNK 175          
The following BLAST results are available for this feature:
BLAST of NO04G02750 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28728.12.800e-10385.55Mpv17/PMP22 [Nannochloropsis gaditana][more]
EWM28134.11.400e-5459.43mpv17-like protein [Nannochloropsis gaditana][more]
XP_005707552.11.300e-4956.14peroxisomal membrane MPV17/PMP22-like protein [Gal... [more]
CBN79193.13.900e-4955.11conserved unknown protein [Ectocarpus siliculosus][more]
EWM26132.11.900e-4856.50mpv17-like protein [Nannochloropsis gaditana] >EWM... [more]
NP_001090480.15.600e-4854.29uncharacterized protein LOC779393 [Xenopus laevis]... [more]
XP_005776476.11.600e-4756.14putative peroxisomal membrane protein [Emiliania h... [more]
CBJ27540.12.800e-4755.11conserved unknown protein [Ectocarpus siliculosus][more]
OEU19890.11.400e-4649.72hypothetical protein FRACYDRAFT_206674 [Fragilario... [more]
OEU20060.11.400e-4652.33hypothetical protein FRACYDRAFT_167937 [Fragilario... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009542NSK009542Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02750.1NO04G02750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578851gene_2047Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100002g3gene1929Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02750.1NO04G02750.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02750 ID=NO04G02750|Name=NO04G02750|organism=Nannochloropsis oceanica|type=gene|length=1241bp
ATGCGTGTCGCGCTTGCCTTGGTCGCCTCTTTGGCCGTCACCGAGGCCTA
CTTCAAGCCCCTTGCCCCCCGTCAGGCGCCCAAGCTCTTTAGCCAGGCCA
AGAGCAGCGTGGTCCCCGCCCTCAGTCACGGTGGCATCGGCGGCAATGGC
GGTAACAATGATGATTTGTGGGGTGGGTGGAACGGTGGGGGCTGGAACGG
TGGGGGAAATGAGGAGGAAGGCAACGTACACTATGGGGGTGGCTTGGGCA
TGCTTTGGGACAAGTACAACGAGGTTCTCGAATCCAGCCCGTTGCCGACC
AAGGCGGTCACGTCTCTGGTGGGCTTTACAATCGGGGATCTGCTGGCTCA
GAACTTCTTGGGGGAGAAGGGGGCGCCACTTGATGTGAAGCGGTTGTTGC
GATTGGCTTCTTTTGGGCTGGCGGTGCACGGGCCTGTTGGTCACTTTTTT
TATGGGGCTCTGGATGAGAAGCTCCCAAAGAAGGATGCGGCTACCGTGGC
GATGAAGGTCTTGATTGACCAGGTGCTGTGGGCTCCTATTTTCACTGTTA
TTTTCTTCGCGTGGATTGAGCTGTTGCAGGGGTCTGGGTTGCAGAAGATT
AAGGCAAAGATCAACCAGGATCTGGTGCGGGGTGTGACAGCATCGTGGAA
GGTCTGGCCTTTGGTGCACGTGATTAACTTCCGTTTTATTCCTTCCCAGC
AGCGATTGTTGTACATCAATACGATCCAGgtgagcctctttttggtgttg
ttttggtcctgactggttatggcaagaccagtatgcgttaaaaaaatagg
tagaccagaaacatttttcactttcttctcattctccttcaatccccctt
ctcctttcagATTGGCTACAACGTTTTCCTGTCCATGTTGGCCTCCCGCA
CGGgtacgtgtgaggggagggagtggagggaggaagcggggatgtgcgag
aaattagaatggaaccgtcgcggtttcgggtgtgacggatgcttatgtgg
agctcctttctcacctgcacctgtgatattttgcttgctgtgtcgccgag
atgcttctgtcgcatgcagaagaaagacagccctttgtgttcgtcttttc
aatgggcctcatctcataatatacagacgcatggtattcctccataccct
cgcgacgttgttgtccccaaaaaaacacatttagctttcttttctcatac
tctcgttttcgtctcgcttcattccaaattacacagGTTAA
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protein sequence of NO04G02750.1

>NO04G02750.1-protein ID=NO04G02750.1-protein|Name=NO04G02750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=259bp
MRVALALVASLAVTEAYFKPLAPRQAPKLFSQAKSSVVPALSHGGIGGNG
GNNDDLWGGWNGGGWNGGGNEEEGNVHYGGGLGMLWDKYNEVLESSPLPT
KAVTSLVGFTIGDLLAQNFLGEKGAPLDVKRLLRLASFGLAVHGPVGHFF
YGALDEKLPKKDAATVAMKVLIDQVLWAPIFTVIFFAWIELLQGSGLQKI
KAKINQDLVRGVTASWKVWPLVHVINFRFIPSQQRLLYINTIQIGYNVFL
SMLASRTG*
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Synonyms
Publications