NO04G02580, NO04G02580 (gene) Nannochloropsis oceanica

Overview
NameNO04G02580
Unique NameNO04G02580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2283
Alignment locationchr4:687237..689519 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat-containing protein At2g31400, chloroplastic
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:687237..689519 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR033443PPR_long
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of NO04G02580 vs. NCBI_GenBank
Match: EWM28763.1 (Pentatricopeptide repeat containing protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 152.5 bits (384), Expect = 5.200e-33
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 0 
Query:    1 MLGHGLVPDLKTVKTIMRTCVKKLAWRRAVQLLHTTGLPLDVVIFTMAINTCGKAGEWEQGLRVLREMDSEEAKAHGIVP 81
            MLG GLVPDLKTVKTIMRTCVKKLAWRRAVQLLH  GLPLDVVIFTMAINTCGKAGEWEQGLRVLREMDS++AKA GI+P
Sbjct:  560 MLGRGLVPDLKTVKTIMRTCVKKLAWRRAVQLLHMEGLPLDVVIFTMAINTCGKAGEWEQGLRVLREMDSDDAKARGILP 639
The following BLAST results are available for this feature:
BLAST of NO04G02580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceEWM28763.1
Match NameE-valueIdentityDescription
EWM28763.15.200e-3391.25Pentatricopeptide repeat containing protein, parti... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009561NSK009561Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02580.1NO04G02580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668757gene_2028Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02580.1NO04G02580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02580 ID=NO04G02580|Name=NO04G02580|organism=Nannochloropsis oceanica|type=gene|length=2283bp
ATGCTGGGGCATGGGCTGGTGCCGGACCTGAAGACGGTGAAGACCATCAT
GCGGACATGCGTGAAGAAGCTGGCCTGGCGACGGGCGGTGCAGCTGCTGC
ACACAACAGGCCTGCCGCTGGACGTGGTCATCTTCACAATGGCTATCAAC
ACTTGCGGTAAGGCCGGAGAGTGGGAGCAGGGCCTGCGGGTGCTGCGGGA
GATGGACTCTGAGGAGGCCAAGGCCCACGGCATCGTGCCCAACGAGGTGA
GCTACGGGACGGCCATCTCGGCTTGCGGCAAGGCGGGCCGGTGGGAGCTG
GCGCTCTCGCTCTTAAACGAGGTCAAGGATCGCGGCCTGCTCCTCAATGA
TGTTTGTTACGGCGGGGCAATTGATGCCTGCGGGCGCGCGGGTCAGTGGC
AGGAGGCACTCAAGCTCCTGAATGAGATGACGCTGGACGGGGTGGCGGCC
AATGAGGTGTGCTACAACTCGGCCATCTCCGCCTGCGGCAAGGCCGGGGA
GTGGGAGAAGGCGGTGGCTTTGTTGCGCGAGATGCGGGAGCGGGGCCTGA
CGCCCGACGAGCTGAACTACAACTCCGCTATCTCGGCCTGCGGCAAGGCG
GCCCAGTGGGCGCACGCCATTCGCCTGCTCCGCGAGATGGCCGTACAAGG
GTTGTGCCCGGATGTGGTGTCCTACGGGGCGGCCATCGATGCCTGCCGTA
AGGCCGGCAAGTACGACCGAGGCCTGGCGCTGCTGGGCGAGATGCGCCAG
GTGGGCCTGGTGCCCAACGAGGTTTGCTACCACTCGGCGGTCACGGCCTG
CTCCGAGGCAGGCCGGTGGAATGAGGCCCTGTTTGTGCTCTCGGAGATGG
TCAAGCAAGGCCTCAAGCCGGATGCCATCAGCTACAATGCGGCTGTGGAG
GCCTGCGCCAAGTCGGGAAAGTGGGACGCCCTGGTCATCCTGCTGCAGGA
GACGGCTCGGGACCCGGACACCACACTTTTGGATGCCGTCTACAACAATG
CCGTCATAACCTGCGCCAAGTACGGCAACTGGGAGTTGGCGGCCACCGTG
CTGCAGGAGATGGAGTATTTGGGTGGGAATGGTGGAAGTGGGGCGGGGAC
GCCGGGCGGCAGCAATAGCAGCAGTCATCCGGGCTTGTCGCCCACCTCGG
CCTCCTACTCTGCGGTCATTGACGCTTGTGCCAAGGCCCTGGCCGCCGCA
GGAGCAGCAGGTGACGGGAGCCCATCCTCTTTCAACCCTCCCCCTCCCGG
TGGCCTGCCCCAGTGGGAGCTGATCCTGAGCAAGCTTGACCGCATGCGTG
AGAAGGGCCTGCTGCCCGACTCCAGCTCGTACAACGCGGCCGTACGCGCC
TGTGTCTGCGGGCCAGCCAAGCACTGGAAGAAGGCCGTGGATTTGCTGCA
GGAGATGGCCTCAAAGGGCTACCTAGTCGACCAGAGTACCTCGAACGCCG
TCATGCAGGCCTGCACTGCTGGCGTTGCCGGCGCTGCGGGTAGTGATGCT
GCGGATGAGGCAGTTGTATCATCAACAGCCGCGGGAGGGATGGGCAGACC
CGACGAGACCCATGCTGCAGCAGAACGTGAGAGGGCCTTGGCACTCCTCC
GCAAGATGATGGCAGGCGGCTCACCTTTTGACAGCACCAGTAGCGAGTCC
TCAGGTGTGCCTTCTGGCCCTCCTGCTGCTCTTCTTTCCGCTGTGTCTTC
CTCCCGCACTTCTACAGGACTGGGCTCCGGTGCTCCCTCCTTAGCGTCTT
CCACCTCTTGCCTATTGCTTAACTCACACGGAGGAGACTCGTTTGTCGAG
AGTGGGCAAGCCCCACTTTGGGAACGGACAACCAGTATCCCCGACGAAAT
TGCACTCACGAGTGGAAGCAGCGTGATTGGAGAAGTCGGTGGTCTCGTGC
TTGGTGGTGACCTCGCAGAGATCCTTGGCCCTTCCTCCCCGACGGGCCCG
GAATCCCCGCGACCGGTGGGGTTGATCGGCAGTCCATCTTTCAGTTCTAT
TCCAGCTTCATCGACGGTTGCATATCCTCGGTCGCCTGCTATGGCGTTAG
GACCTGGGAGTCCATTTTTGAGCGCGACTAAAGGTAGCAGCACCGAGAAT
GATGGGAATGGAGGAGGAAGGATGGGAAGCTTCTTGTTGCAAGCGGCGCG
GCACAAGCCGACAGAGCAGAAGGTCGAAGTTGTGACGGGGGATAGTGATG
GGGAGGGAAGAGCCCCTGGTGATGGTGCGATGGAAAGTGAGAAAGCGGTG
GGCGTTTTAAATTCAGGATGGAGCCAGTCGTAA
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protein sequence of NO04G02580.1

>NO04G02580.1-protein ID=NO04G02580.1-protein|Name=NO04G02580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=761bp
MLGHGLVPDLKTVKTIMRTCVKKLAWRRAVQLLHTTGLPLDVVIFTMAIN
TCGKAGEWEQGLRVLREMDSEEAKAHGIVPNEVSYGTAISACGKAGRWEL
ALSLLNEVKDRGLLLNDVCYGGAIDACGRAGQWQEALKLLNEMTLDGVAA
NEVCYNSAISACGKAGEWEKAVALLREMRERGLTPDELNYNSAISACGKA
AQWAHAIRLLREMAVQGLCPDVVSYGAAIDACRKAGKYDRGLALLGEMRQ
VGLVPNEVCYHSAVTACSEAGRWNEALFVLSEMVKQGLKPDAISYNAAVE
ACAKSGKWDALVILLQETARDPDTTLLDAVYNNAVITCAKYGNWELAATV
LQEMEYLGGNGGSGAGTPGGSNSSSHPGLSPTSASYSAVIDACAKALAAA
GAAGDGSPSSFNPPPPGGLPQWELILSKLDRMREKGLLPDSSSYNAAVRA
CVCGPAKHWKKAVDLLQEMASKGYLVDQSTSNAVMQACTAGVAGAAGSDA
ADEAVVSSTAAGGMGRPDETHAAAERERALALLRKMMAGGSPFDSTSSES
SGVPSGPPAALLSAVSSSRTSTGLGSGAPSLASSTSCLLLNSHGGDSFVE
SGQAPLWERTTSIPDEIALTSGSSVIGEVGGLVLGGDLAEILGPSSPTGP
ESPRPVGLIGSPSFSSIPASSTVAYPRSPAMALGPGSPFLSATKGSSTEN
DGNGGGRMGSFLLQAARHKPTEQKVEVVTGDSDGEGRAPGDGAMESEKAV
GVLNSGWSQS*
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Synonyms
Publications