NO04G02570, NO04G02570 (gene) Nannochloropsis oceanica

Overview
NameNO04G02570
Unique NameNO04G02570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1767
Alignment locationchr4:685444..687210 +

Link to JBrowse

Properties
Property NameValue
DescriptionPentatricopeptide repeat containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:685444..687210 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G02570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02570.1NO04G02570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02570.1NO04G02570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02570 ID=NO04G02570|Name=NO04G02570|organism=Nannochloropsis oceanica|type=gene|length=1767bp
ATGACAACAAGGGACTTCACGTCAGATACAGGGTCGGACCTGCTGTCGTT
GACATCTCTTAGTGGCCTCAGCCCCCGCTTGGCCACCAGAAATCAACCAC
ACGAGCCTAGGTATGACCGTAGCTTCTCGGACGGGAGTACCACGTCCGAG
GGGAGCTATATCAGCCTCGGCAGTAGCAGCGGCATTCAGGGTAGCAGCCA
TGGAGGAGGTATACACCGGCAAGGCGTTGGTGGGGACAATGGCAAGAGCG
GGCTGGGGCTATGGAAGTACGAGCACCACCTCCCGCCACCGGCTCCTTCT
TCCTCTCCATATTCCTTTGGTGGGTCTTCAATGATGTCGTCCCTGCCCGA
CCACCACGCAGGCTATCGCAGCAACGCTACTCTTCAACCTCCCCCCAATT
TGCAGCTGCAGCATCTTCACAGCTGTGATTGTGGCGACGGCGCATTCGTC
GGTGGAACTGGTCAGCTACCCCATAGAAATAACAGCAACAACCATAACAG
CAGCAGCAGCAGCTGCGGCAGCATCACCAACAGCAGCAACAAAAACAGTC
GCAACAACTACAACAACACGAACAACAGTGCCGCGTGGCCCAACGGGTTG
GGCGAGCGTCTGGACGCGGATCTCGAAGCACGTATGTCTCCTCTGTTCTC
CCCTTCAGTACCTTCGCCCACACACAGCCCGCATTCCTCGGTCACGGACC
TTGAGACATCACTCTCTAGCCTCTTTCTTGGTGATGGAGGATCAGCAGCG
GATTCTGGAGGAAGCCTTCGTTCCAATTCACTCGATGACATAGGTAACGC
TGGTGGGAAAACGCCTCAGGAACACTCAATCTCCAGCTCGCCCGCTCAAG
TGCACTTCTCCAGCAGCAGTGTGACATCTCCCCGGTACGTCCCCCAGCAA
CACCAGCAGCAGCAGCAGCCATACCAACTTCAGCAGCAGCCTTTCCATTC
TTCGGATGGTGCCTGCGCGCACGTCTTCAGCCCGCGCCAGCTTGGAGCGG
CTGCCGCTGCTGCTTCCGCCGCTAGCTTTGACAACCAGGCACACTTGCAG
GAGCACCACCACCAGCAGCAACAGCAACAGCGGCAGGCGCCATTGCAAAC
GCTTTTGATTAAAATCCCGACGTTGCTTTCCCCCTGTGGTTCTGGGCCGA
GTAGCGCACCAGCGGCAGGAGTGAGCAACAGAAGCCACCTCTTCCTAGGT
GCCCATAGGGGTGGTAGTGATGACAATGGTGGAGGTGGGATGAGACACGG
TCGTAATACTTTCTCCCAGCACCTTCAAGGACAGATCTCCCCTCGCTTCG
CAAGCGATGCGTTAGGGATGGGAGAAAGCATGAATATGAGGGGCATGGGG
GGGGGGGACAGTCTCCACAGCCCGTCTTCTCGGCAGTACAACCACCACCA
GCAGCAGCAGCAGCTACAACAGCAGCATGAGGAAGGACGTCATTCTCCTC
ACATGGGCCGGAGCAACAGTCTGGGTACCTACGGGGCAAGTGGCGGGTAT
GGTGGAGGTGGTGGGGATGGTCGACGTGGAGGAGGAGGAGTGAGGGGCGG
TGATTATAGCATGGAAGGAGGAGGAAGAGGAAGGGGAGGAGGATTCTATT
CGCCGACGGGTTCGAGTAGTAGTGGGATGGGGAGTCCAATCGGGCTGGAC
TTTGATGAGTACTATGTGTCGGGGGGATCTCCAAGGGGGGGGGTCACAGG
CCCATGGATTTTGAGACGAAGCGTTGCTCGAACGCAATTAAGAAGCTGTG
CAGCGCGGGGAATGTGA
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protein sequence of NO04G02570.1

>NO04G02570.1-protein ID=NO04G02570.1-protein|Name=NO04G02570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=589bp
MTTRDFTSDTGSDLLSLTSLSGLSPRLATRNQPHEPRYDRSFSDGSTTSE
GSYISLGSSSGIQGSSHGGGIHRQGVGGDNGKSGLGLWKYEHHLPPPAPS
SSPYSFGGSSMMSSLPDHHAGYRSNATLQPPPNLQLQHLHSCDCGDGAFV
GGTGQLPHRNNSNNHNSSSSSCGSITNSSNKNSRNNYNNTNNSAAWPNGL
GERLDADLEARMSPLFSPSVPSPTHSPHSSVTDLETSLSSLFLGDGGSAA
DSGGSLRSNSLDDIGNAGGKTPQEHSISSSPAQVHFSSSSVTSPRYVPQQ
HQQQQQPYQLQQQPFHSSDGACAHVFSPRQLGAAAAAASAASFDNQAHLQ
EHHHQQQQQQRQAPLQTLLIKIPTLLSPCGSGPSSAPAAGVSNRSHLFLG
AHRGGSDDNGGGGMRHGRNTFSQHLQGQISPRFASDALGMGESMNMRGMG
GGDSLHSPSSRQYNHHQQQQQLQQQHEEGRHSPHMGRSNSLGTYGASGGY
GGGGGDGRRGGGGVRGGDYSMEGGGRGRGGGFYSPTGSSSSGMGSPIGLD
FDEYYVSGGSPRGGVTGPWILRRSVARTQLRSCAARGM*
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Synonyms
Publications