NO04G02530, NO04G02530 (gene) Nannochloropsis oceanica

Overview
NameNO04G02530
Unique NameNO04G02530
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1162
Alignment locationchr4:676096..677257 -

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Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:676096..677257 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO04G02530 vs. NCBI_GenBank
Match: EWM28629.1 (fkbp-type peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 275.0 bits (702), Expect = 2.100e-70
Identity = 148/209 (70.81%), Postives = 163/209 (77.99%), Query Frame = 0
Query:   24 LCFTLLCCSVLPSMAYLMPFMKA--PSCNPSSSGKNTIARRDAVAGTGMMAALILAVGGGTATAFGLPLGASAEE-PVKVRKVNPNKIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSPI 230
            LC  LL   +  + AY++P M     S    +  K    RR+AV  TGM+ A+ LA GG TAT    PL   AEE PVKVRKVNPNKIRET NGVKY DVKVGEG SPR G+YVIITYIGQLSDGTIFDGLHGPGKKPLAFK+GAKQVIPGLEEALL MQ GGERQ LVPA+LAFGEKGVCT+KGECLVPPN+NVKY++ LKRVAVSPI
Sbjct:    9 LCSNLLLLVI--TTAYVVPSMTTTPTSWARYAKEKGVAVRREAVGFTGMLGAVALATGGSTATTLAWPLQVLAEESPVKVRKVNPNKIRETPNGVKYVDVKVGEGESPRGGDYVIITYIGQLSDGTIFDGLHGPGKKPLAFKIGAKQVIPGLEEALLSMQAGGERQLLVPADLAFGEKGVCTEKGECLVPPNTNVKYNVILKRVAVSPI 215          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: XP_005539439.1 (similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D] >BAM83403.1 similar to FKBP-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 143.7 bits (361), Expect = 7.300e-31
Identity = 67/138 (48.55%), Postives = 94/138 (68.12%), Query Frame = 0
Query:   91 GASAEEPVKVRKVNPNKIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSP 229
            GA A      +K++ +K     +GV Y D K G GASP++G+ V+I YIG LSDGTIFD     G+KPLAF  G KQ++PG+E+ +  M+ GG+R+ +VP+EL FGE+GVC +   CLVPPN  + YD+ L RV+++P
Sbjct:   86 GARAAGTTTPQKLDLSKFVRDPSGVLYRDYKEGTGASPKDGDLVVINYIGYLSDGTIFDNTTAKGRKPLAFIFGKKQMVPGVEKGIETMKTGGKRRIIVPSELGFGERGVCIEGQGCLVPPNETLTYDVELMRVSIAP 223          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: CBJ48478.1 (FK506-binding protein 1 [Ectocarpus siliculosus])

HSP 1 Score: 133.7 bits (335), Expect = 7.500e-28
Identity = 79/186 (42.47%), Postives = 106/186 (56.99%), Query Frame = 0
Query:   44 MKAPSCNPSSSGKNTIARRDAVAGTGMMAALILAVGGGTATAFGLPLGASAEEPVKVRKVNPN-KIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSP 229
            M A S  P   G     RRD +           AV G  A+A  LP GA A       K  PN ++  T  GVK+  +K G G   R+G++ ++ + G L DG +FD  + PG+KP+AF+LG +QVI G EE L  M  G E Q +VPA +AFG+KG+C D G+CLV P  +V+YD+ LKRVA +P
Sbjct:    1 MAASSPRPGLDG----TRRDVIQTAS------AAVAGLLASAV-LPAGALA-----AAKAEPNRRVFTTDGGVKFIVLKEGTGPVARDGDFCVVEFTGFLPDGAVFDASNAPGRKPIAFQLGKRQVIKGWEEVLRLMNAGAEVQMVVPANMAFGDKGICIDNGDCLVKPGMDVRYDLQLKRVAPTP 170          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: OSX68862.1 (hypothetical protein BU14_2157s0001, partial [Porphyra umbilicalis])

HSP 1 Score: 127.5 bits (319), Expect = 5.400e-26
Identity = 60/102 (58.82%), Postives = 78/102 (76.47%), Query Frame = 0
Query:  130 EGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCT-DKG-ECLVPPNSNVKYDMTLKRVAVSPI 230
            EG+ VI+ YIG L+DG +FD    PG+KPLA ++G   VIPGLEEA+LGMQ GG+R  +VP  L +GE+GVC  D G +CLVPPNS ++YD+TL+RV+ SPI
Sbjct:    1 EGDLVIVDYIGYLADGRVFDSSSSPGRKPLAIQIGKNTVIPGLEEAVLGMQQGGQRIVIVPPALGYGERGVCLGDAGSDCLVPPNSVIEYDLTLRRVSPSPI 102          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: XP_005716850.1 (unnamed protein product [Chondrus crispus] >CDF37031.1 unnamed protein product [Chondrus crispus])

HSP 1 Score: 122.5 bits (306), Expect = 1.700e-24
Identity = 73/185 (39.46%), Postives = 103/185 (55.68%), Query Frame = 0
Query:   48 SCNPSSSGKNTIARRDAVAGTGMMAALILAVGGGTATAFGLPLG---ASAEEPVKVRKVNPNKIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCT-DKGECLVPPNSNVKYDMTLKRVAVSP 229
            SC PS +   T +RR             LA+G   AT    P G   A+A  P  ++           +G+ Y+DVK G GA P  G++V+I Y   LS+G IFD      +K   F++G +QVIPGLE A+  M+PGGER+ ++P  LA+G++GVC  +  ECLVPP   + Y + L+RVA+SP
Sbjct:  177 SCPPSMNSAPTFSRRQVSR---------LALGALLATTVLEPTGRALAAARRPEYIK---------DESGISYYDVKGGSGAGPINGDFVVIDYQAFLSNGKIFD-----NRKGFVFQMGQRQVIPGLETAVSTMKPGGERKVVIPPTLAYGDRGVCIGESKECLVPPGETLGYSVNLQRVAISP 338          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: OEU13338.1 (FKBP-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 115.2 bits (287), Expect = 2.800e-22
Identity = 63/147 (42.86%), Postives = 86/147 (58.50%), Query Frame = 0
Query:   84 TAFGLPLGASAEEPVKVRKVNPNKIRETANGVKYFDVK-VGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKP-LAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSP 229
            +A  L    S +  VK     P  I   +NGVKY   K V +G+ P+EG+   I Y G LS+G IFD  HG GKK  L FKLG+  V  G+   +  M+ G + Q ++P ELAFG+KG+C D GECLV P + + YD+ LK+ ++ P
Sbjct:    7 SAGALVTAVSLQPTVKADAAAPT-IYNLSNGVKYAITKDVAKGSFPQEGDICAIEYTGYLSNGAIFDATHGEGKKSVLLFKLGSSVVNAGINSMVGEMKVGQKVQAIIPPELAFGDKGICLDDGECLVKPGATLVYDILLKKASIPP 152          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: XP_005827601.1 (FKBP-type peptidyl-prolyl cis-trans isomerase [Guillardia theta CCMP2712] >EKX40621.1 FKBP-type peptidyl-prolyl cis-trans isomerase [Guillardia theta CCMP2712])

HSP 1 Score: 113.6 bits (283), Expect = 8.100e-22
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 0
Query:  114 GVKYFDVKVGEG------ASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSPI 230
            G+ Y D K  +G      A   EG++V+I YI  L DGTIFD     G KP+AF++G KQV+PGL++ ++GM+ G  RQ  + +E  +G +GVC +   CLVPPN+++ YD+TL  V  SPI
Sbjct:   88 GLSYVDKKKNDGILSGLTAGVNEGDFVVIDYIAYLRDGTIFDNTRKRG-KPVAFQVGKKQVVPGLDQGIIGMKAGEARQIFMKSEFGYGARGVCLEDKGCLVPPNTDLVYDVTLISVGPSPI 208          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: OYW04346.1 (hypothetical protein B7Z61_09935 [Acidobacteria bacterium 37-71-11])

HSP 1 Score: 107.8 bits (268), Expect = 4.400e-20
Identity = 60/171 (35.09%), Postives = 92/171 (53.80%), Query Frame = 0
Query:   51 PSSSGKNTIARRDAVAGTGMMAALILAVGGGTATAFGLPLGASAEEPVKVRKVNPNKIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTL 222
            P+   K            G++   +LA G        LP  A   EP K  KV+  K+  TA+G++Y DVKVG GA  + G  V + Y G+  DG +FD     GK+P  F LGA +VI G +E + GM+ GG+R+ ++P +LA+G++G        ++PPN+ + +D+ L
Sbjct:    2 PARGTKGVATMAKCTVRFGVLWGAVLAAG----ITLALPAAARGAEPAKAGKVD-EKVITTASGLQYVDVKVGTGAEAKAGQTVTVNYTGRFEDGKVFDS--SVGKRPFEFPLGAGRVIKGWDEGVAGMKVGGQRKLIIPGKLAYGDRGY-----PGVIPPNATLLFDVEL 160          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: XP_005706116.1 (peptidylprolyl isomerase [Galdieria sulphuraria] >EME29596.1 peptidylprolyl isomerase [Galdieria sulphuraria])

HSP 1 Score: 107.1 bits (266), Expect = 7.500e-20
Identity = 62/176 (35.23%), Postives = 95/176 (53.98%), Query Frame = 0
Query:   57 NTIARRDAVAGTGMMAALILAVGGGTATAFGLPL-GASAEEPVKVRKVNP-NKIR--ETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSP 229
            NT+ RR  V          LA+    + +F L +   +A E ++  K++P N +R      G+K  ++  G G  P  G+  ++ Y G LS+G +FD     G+KP+AF  G  QVIPG E  L  M+PGG R  ++   LA+GE+GVC +   C +PP   + +D++L R+A SP
Sbjct:   39 NTMQRRQFVR---------LALVAFASVSFPLKIQSLAATEQLEALKLSPFNNLRFVTLEPGLKVAEISQGSGPQPLPGDICVVEYTGYLSNGQVFDSTSAKGRKPIAFLYGKGQVIPGWEIGLRDMRPGGRRVLVISPSLAYGEQGVCLEGYGCYIPPKETLVFDVSLVRIAPSP 205          
BLAST of NO04G02530 vs. NCBI_GenBank
Match: PSP18867.1 (peptidylprolyl isomerase [Cyanobacteria bacterium QS_8_64_29])

HSP 1 Score: 107.1 bits (266), Expect = 7.500e-20
Identity = 60/180 (33.33%), Postives = 92/180 (51.11%), Query Frame = 0
Query:   62 RDAVAGTGMMAALILAVGGGTATAFGLPLGASAEEP-------------VKVRKVNPNKIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDGLHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGVCTDKGECLVPPNSNVKYDMTLKRVAVSP 229
            R  +   G +AA +L + G      G     +AE P             V    ++P+ +  T +G+KY D++ G+G SP  G  V++ Y G LSDGT FD        P +FKLGA QV+PG EE +  M+ GG R+ ++P EL +GE G  +     ++PPN+ + +D+ L  +   P
Sbjct:    2 RGILISLGALAACLLVLLGAQLANSGSDRALAAESPPTNTPGFEDLPTIVNSSNLDPDAVVTTDSGLKYVDIRQGDGPSPEPGQTVVVHYTGTLSDGTQFDSSR-ERNNPFSFKLGANQVVPGWEEGVATMRVGGRRELIIPPELGYGESGASS-----IIPPNATLIFDVELLEIKGKP 175          
The following BLAST results are available for this feature:
BLAST of NO04G02530 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28629.12.100e-7070.81fkbp-type peptidyl-prolyl cis-trans isomerase [Nan... [more]
XP_005539439.17.300e-3148.55similar to FKBP-type peptidyl-prolyl cis-trans iso... [more]
CBJ48478.17.500e-2842.47FK506-binding protein 1 [Ectocarpus siliculosus][more]
OSX68862.15.400e-2658.82hypothetical protein BU14_2157s0001, partial [Porp... [more]
XP_005716850.11.700e-2439.46unnamed protein product [Chondrus crispus] >CDF370... [more]
OEU13338.12.800e-2242.86FKBP-like protein [Fragilariopsis cylindrus CCMP11... [more]
XP_005827601.18.100e-2245.08FKBP-type peptidyl-prolyl cis-trans isomerase [Gui... [more]
OYW04346.14.400e-2035.09hypothetical protein B7Z61_09935 [Acidobacteria ba... [more]
XP_005706116.17.500e-2035.23peptidylprolyl isomerase [Galdieria sulphuraria] >... [more]
PSP18867.17.500e-2033.33peptidylprolyl isomerase [Cyanobacteria bacterium ... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL081nonsL081Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR058ncniR058Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR111ngnoR111Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009567NSK009567Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02530.1NO04G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578772gene_2023Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100182g5gene1953Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02530.1NO04G02530.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02530 ID=NO04G02530|Name=NO04G02530|organism=Nannochloropsis oceanica|type=gene|length=1162bp
ATGGTGCAAGAGCATTgtaagtctggtgaaaacatttttcaggcagggat
ggcaaaagagattaagtccctgcccttgcttcgccatgaaggcccgaatc
atttagacacgtcaacgagcattgagtgagtccaacccacttgcccaccc
tcatcctacttgtctcatacacccatcacagGTCGCGAGGACGACCACAA
CGACACGGACACGGACGGCATGGCAATGAAACTTCTTTGCTTTACTCTGC
TGTGTTGCAGCGTCCTCCCTTCAATGGCGTACCTCATGCCCTTTATGAAA
GCTCCTTCCTGTAACCCCTCTTCTAGTGGCAAGAACACTATCGCGCGGCG
AGATGCCGTGGCAGGAACCGGAATGATGGCGGCCCTGATATTAGCCGTGG
GCGGAGGCACGGCAACGGCCTTTGGGTTGCCTCTGGGGGCCTCGGCGGAG
GAGCCAGTGAAAGTTAGAAAGGTTAACCCCAACAAGATCCGCGAGACTGC
CAATGGCGTTAAATACTTTGATGTGAAAGTGGGAGAGGGCGCATCGCCAC
GTGAAGGGAACTATGTAATTATCACCTACATCGGACAGCTTTCGGATGGG
ACGATTTTTGATGGCCTGCACGGACCGGGGAAGAAGCCGTTGGCGTTTAA
GCTGGGGGCGAAGCAAGTTATCCCCGGCTTGGAGGAGGCATTATTAGGCA
TGCAACCAGGAGGGGAACGGCAGTGTTTGGTGCCGGCTGAGTTGGCATTC
GGGGAGAAAGGTGTGTGCACGGACAAGGGGGAGTGCTTGGTCCCGCCAAA
CTCAAATGTCAAGTATGACATGACGTTGAAGCGTGTAGCGGTCTCGCCTA
TCTAAGAGACATTTCCTTTGCTAAAGCGTACCGCAGCATTCAATACTGAT
GGTACTCTGAGAGGAAAAAAAGGAAAAGAATCACGCGGAGGTCTTCTTTA
TTTTCACGCCCACAATCCCATACATGAACACCCCCTTTTGTGGCGTCCAT
GTGTTGCACGTTCGGTATTCTTGATAGATGACATCTCTAATCAGGGAAGT
AGAGTCTGGCATTCATGCTCCGCATTGAAAGAAAGTCTACCACAAGGGAG
GACAGGGGTAAATAGTAAACACATTCAAGTAACCACAACCAATCAGGCGA
TCCAGCAAGCCC
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protein sequence of NO04G02530.1

>NO04G02530.1-protein ID=NO04G02530.1-protein|Name=NO04G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=230bp
MVQEHCREDDHNDTDTDGMAMKLLCFTLLCCSVLPSMAYLMPFMKAPSCN
PSSSGKNTIARRDAVAGTGMMAALILAVGGGTATAFGLPLGASAEEPVKV
RKVNPNKIRETANGVKYFDVKVGEGASPREGNYVIITYIGQLSDGTIFDG
LHGPGKKPLAFKLGAKQVIPGLEEALLGMQPGGERQCLVPAELAFGEKGV
CTDKGECLVPPNSNVKYDMTLKRVAVSPI*
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Synonyms
Publications