NO04G02420, NO04G02420 (gene) Nannochloropsis oceanica

Overview
NameNO04G02420
Unique NameNO04G02420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length498
Alignment locationchr4:660404..660901 +

Link to JBrowse

Properties
Property NameValue
DescriptionSulfotransferase
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:660404..660901 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008146sulfotransferase activity
GO:0016740transferase activity
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR037359NST/OST
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Homology
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: EWM28634.1 (sulfotransferase [Nannochloropsis gaditana])

HSP 1 Score: 164.9 bits (416), Expect = 2.200e-37
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEML 117
            M Y+EFK  +L+SRPLGHGSHSLLGRGLYALQLQPW+  FG D  QLMV+F E+M +  A Q Q+GKVF FLGLPPH IIDT AK+TR Y  +DE+ +ARL+AFYAPFN +LF++L
Sbjct:  471 MNYQEFKDGYLSSRPLGHGSHSLLGRGLYALQLQPWLEAFGRD--QLMVMFMEDMASHNAVQAQLGKVFDFLGLPPHSIIDTHAKNTRAYTPMDERTKARLSAFYAPFNQQLFQIL 584
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: XP_002901874.1 (conserved hypothetical protein [Phytophthora infestans T30-4] >EEY57264.1 conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 108.6 bits (270), Expect = 1.900e-20
Identity = 53/122 (43.44%), Postives = 80/122 (65.57%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M++EEF  + +  R    HG+HS + RGLYALQL  W+  +   K  +++L  +E +T E   T + KVF FL LP H I DT AK+TR+Y+ +D+ ++A+L AFYAP+N++L+ +L R  G
Sbjct:  380 MSFEEFDDKVMHKRLDFDHGAHSFVARGLYALQLSGWIEAY--SKENVLLLTLDEFKTTENLYTTMDKVFNFLDLPYHRIKDTSAKNTRKYDPIDDAVRAKLTAFYAPYNERLYTLLERNMG 499
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: XP_008891572.1 (hypothetical protein PPTG_02268 [Phytophthora parasitica INRA-310] >ETI50277.1 hypothetical protein F443_06131 [Phytophthora parasitica P1569] >ETK90151.1 hypothetical protein L915_06012 [Phytophthora parasitica] >ETL43561.1 hypothetical protein L916_05945 [Phytophthora parasitica] >ETL96735.1 hypothetical protein L917_05834 [Phytophthora parasitica] >ETN22297.1 hypothetical protein PPTG_02268 [Phytophthora parasitica INRA-310] >ETP20042.1 hypothetical protein F441_06142 [Phytophthora parasitica CJ01A1] >ETP48002.1 hypothetical protein F442_06168 [Phytophthora parasitica P10297])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M +EEF  + +  R    HG+HS + RGLYALQL  W+  +G  K  +++L  +E +T E     + KVF FL LP H I DT AK+TR+Y+ +++ ++A+L AFYAP+N+KL+ +L R  G
Sbjct:  408 MCFEEFDEKIMHKRLAFDHGAHSFVARGLYALQLSGWIEAYG--KENVLLLTLDEFKTTENLHDTMDKVFNFLDLPYHRIRDTTAKNTRKYDPINDAVRAKLTAFYAPYNEKLYTLLDRNMG 527
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: ETM49885.1 (hypothetical protein L914_05955 [Phytophthora parasitica])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 53/122 (43.44%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M +EEF  + +  R    HG+HS + RGLYALQL  W+  +G  K  +++L  +E +T E     + KVF FL LP H I DT AK+TR+Y+ +++ ++A+L AFYAP+N+KL+ +L R  G
Sbjct:  408 MCFEEFDEKIMHKRLAFDHGAHSFVARGLYALQLSGWIEAYG--KENVLLLTLDEFKTTENLHDTMDKVFNFLDLPYHRIRDTTAKNTRKYDPINDAVRAKLTAFYAPYNEKLYTLLDRNMG 527
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: XP_024582913.1 ((heparan sulfate)-glucosamine 3-sulfotransferase 1 [Plasmopara halstedii] >CEG46544.1 (heparan sulfate)-glucosamine 3-sulfotransferase 1 [Plasmopara halstedii])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 55/122 (45.08%), Postives = 77/122 (63.11%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M  +EF    L +R    HG+HS L RGLYALQL  W+  +G D   +++L  ++ ++ E     + KVF FLGLP H I DT AK+TR+Y  +DE ++ RLAAFY P+N+KL+ +L R  G
Sbjct:  408 MNPDEFDRTVLRTRLNYDHGAHSFLARGLYALQLASWIEAYGID--NVLLLTLDDFKSVENLYATMDKVFNFLGLPYHRIKDTSAKNTRRYSSIDEAVRVRLAAFYKPYNEKLYALLGRDMG 527
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: GAY01522.1 (Hypothetical protein PINS_009351 [Pythium insidiosum])

HSP 1 Score: 107.1 bits (266), Expect = 5.400e-20
Identity = 55/122 (45.08%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASRPL-GHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M+++ F  R L+   +  HG HS L RGLYALQL+ W   FG  +  ++VL  + M+T E   + + +VF FL LPPH I D  AK+TR+YE ++++ +A+LA FYAP+N KL E+L R  G
Sbjct:  412 MSFDAFDERVLSKAVVPDHGGHSFLTRGLYALQLKGWFDAFG--RENVLVLTLDXMKTTEGLHSTMDRVFNFLELPPHRIEDASAKNTRRYEPMNDETRAKLATFYAPYNAKLNELLGRDLG 531
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: ETO79058.1 (hypothetical protein F444_06193 [Phytophthora parasitica P1976])

HSP 1 Score: 105.5 bits (262), Expect = 1.600e-19
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M +E+F  + +  R    HG+HS + RGLYALQL  W+  +G  K  +++L  +E +T E     + KVF FL LP H I DT AK+TR+Y+ +++ ++A+L AFYAP+N+KL+ +L R  G
Sbjct:  408 MCFEKFDEKIMHKRLAFDHGAHSFVARGLYALQLSGWIEAYG--KENVLLLTLDEFKTTENLHDTMDKVFNFLDLPYHRIRDTTAKNTRKYDPINDAVRAKLTAFYAPYNEKLYTLLDRNMG 527
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: KUF76509.1 (Membrane-associated sulfotransferase kil1 [Phytophthora nicotianae])

HSP 1 Score: 105.5 bits (262), Expect = 1.600e-19
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M +E+F  + +  R    HG+HS + RGLYALQL  W+  +G  K  +++L  +E +T E     + KVF FL LP H I DT AK+TR+Y+ +++ ++A+L AFYAP+N+KL+ +L R  G
Sbjct:  393 MCFEKFDEKIMHKRLAFDHGAHSFVARGLYALQLSGWIEAYG--KENVLLLTLDEFKTTENLHDTMDKVFNFLDLPYHRIRDTTAKNTRKYDPINDAVRAKLTAFYAPYNEKLYTLLDRNMG 512
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: KUF97425.1 (DNA ligase [Phytophthora nicotianae])

HSP 1 Score: 105.5 bits (262), Expect = 1.600e-19
Identity = 52/122 (42.62%), Postives = 79/122 (64.75%), Query Frame = 0 
Query:    1 MTYEEFKTRFLASR-PLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLARPRG 122
            M +E+F  + +  R    HG+HS + RGLYALQL  W+  +G  K  +++L  +E +T E     + KVF FL LP H I DT AK+TR+Y+ +++ ++A+L AFYAP+N+KL+ +L R  G
Sbjct:  376 MCFEKFDEKIMHKRLAFDHGAHSFVARGLYALQLSGWIEAYG--KENVLLLTLDEFKTTENLHDTMDKVFNFLDLPYHRIRDTTAKNTRKYDPINDAVRAKLTAFYAPYNEKLYTLLDRNMG 495
[Close]
BLAST of NO04G02420 vs. NCBI_GenBank
Match: CBN77079.1 (Sulfotransferase [Ectocarpus siliculosus])

HSP 1 Score: 103.2 bits (256), Expect = 7.900e-19
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 0 
Query:    5 EFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVLFTEE-MRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQARLAAFYAPFNDKLFEMLAR 119
            +F   +L++RP G+G HSLLGRGLYALQLQPW+  FG D  Q+ VLF EE +++ ++ Q  +  VF  +GLPP  + D   K+ R Y  +DE ++ RL  FYAP++  L ++L R
Sbjct:  430 DFARDYLSTRPNGYGGHSLLGRGLYALQLQPWLEAFGRD--QIKVLFLEEVVKSEDSLQEAMDGVFEHVGLPPSPVEDKAPKNHRDYPPMDEGVRRRLRDFYAPYDAALRQLLRR 542
The following BLAST results are available for this feature:
BLAST of NO04G02420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
50100150200250300350400450Expect = 2.20e-37 / Id = 67.24Expect = 1.90e-20 / Id = 43.44Expect = 5.40e-20 / Id = 43.44Expect = 5.40e-20 / Id = 43.44Expect = 5.40e-20 / Id = 45.08Expect = 5.40e-20 / Id = 45.08Expect = 1.60e-19 / Id = 42.62Expect = 1.60e-19 / Id = 42.62Expect = 1.60e-19 / Id = 42.62Expect = 7.90e-19 / Id = 46.09SequenceEWM28634.1XP_002901874.1XP_008891572.1ETM49885.1XP_024582913.1GAY01522.1ETO79058.1KUF76509.1KUF97425.1CBN77079.1
Match NameE-valueIdentityDescription
EWM28634.12.200e-3767.24sulfotransferase [Nannochloropsis gaditana][more]
XP_002901874.11.900e-2043.44conserved hypothetical protein [Phytophthora infes... [more]
XP_008891572.15.400e-2043.44hypothetical protein PPTG_02268 [Phytophthora para... [more]
ETM49885.15.400e-2043.44hypothetical protein L914_05955 [Phytophthora para... [more]
XP_024582913.15.400e-2045.08(heparan sulfate)-glucosamine 3-sulfotransferase 1... [more]
GAY01522.15.400e-2045.08Hypothetical protein PINS_009351 [Pythium insidios... [more]
ETO79058.11.600e-1942.62hypothetical protein F444_06193 [Phytophthora para... [more]
KUF76509.11.600e-1942.62Membrane-associated sulfotransferase kil1 [Phytoph... [more]
KUF97425.11.600e-1942.62DNA ligase [Phytophthora nicotianae][more]
CBN77079.17.900e-1946.09Sulfotransferase [Ectocarpus siliculosus][more]

Pages

back to top
Relationships

The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02420.1NO04G02420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02420.1NO04G02420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02420 ID=NO04G02420|Name=NO04G02420|organism=Nannochloropsis oceanica|type=gene|length=498bp
ATGACGTACGAAGAGTTTAAGACACGGTTTTTAGCTTCGAGACCACTTGG
GCATGGCAGCCATTCGTTGCTAGGGAGAGGGCTGTATGCCTTGCAGTTGC
AGCCGTGGATGGCTGAATTTGGGGGAGACAAGGGTCAGTTGATGGTATTG
TTTACCGAGGAGATGAGGACGGGGGAGGCGGCGCAGACACAGGTCGGCAA
GGTGTTTGCGTTCTTGGGGCTGCCTCCTCATGACATAATTGATACAGATG
CCAAGCATACTAGGCAGTACGAACAGGTGGACGAAAAAATGCAAGCGAGG
TTGGCAGCATTTTACGCGCCGTTTAATGACAAGTTGTTTGAGATGTTGGC
GCGACCGAGGGGGATGGCGGGGTGGGCGGGGATGAAAGAGGAGGGAGGGG
TTCGCAATGGACAGGTACTGTCCGTAGACGAGGCGAAGTCGGAGCAGCTT
CGTACAAATGTAAGGACTGAACAAAATATGCGGCGAAAGCGGGAATAA
back to top

protein sequence of NO04G02420.1

>NO04G02420.1-protein ID=NO04G02420.1-protein|Name=NO04G02420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=166bp
MTYEEFKTRFLASRPLGHGSHSLLGRGLYALQLQPWMAEFGGDKGQLMVL
FTEEMRTGEAAQTQVGKVFAFLGLPPHDIIDTDAKHTRQYEQVDEKMQAR
LAAFYAPFNDKLFEMLARPRGMAGWAGMKEEGGVRNGQVLSVDEAKSEQL
RTNVRTEQNMRRKRE*
back to top
Synonyms
Publications