NO04G02140, NO04G02140 (gene) Nannochloropsis oceanica

Overview
NameNO04G02140
Unique NameNO04G02140
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1943
Alignment locationchr4:616109..618051 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:616109..618051 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
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BLAST of NO04G02140 vs. NCBI_GenBank
Match: XP_005854297.1 (hypothetical protein NGA_2080720, partial [Nannochloropsis gaditana CCMP526] >XP_005855173.1 hypothetical protein NGA_2080710, partial [Nannochloropsis gaditana CCMP526] >EKU21187.1 hypothetical protein NGA_2080710, partial [Nannochloropsis gaditana CCMP526] >EKU22063.1 hypothetical protein NGA_2080720, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 112.1 bits (279), Expect = 1.000e-21
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:   11 HISQSMGSISSLIFDPATSINYDFVAGSYLVASIICLALAVASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRWQAGLKAAAK 95
            +I  +M  + S + +P+ SINYDFVAGSY +AS++CLALAV+S+ FEVSSVKGWWIALAPFPP+ +WSLIVR+RW   L++  K
Sbjct:    8 NIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTK 91
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BLAST of NO04G02140 vs. NCBI_GenBank
Match: EWM28605.1 (hypothetical protein Naga_100009g105 [Nannochloropsis gaditana])

HSP 1 Score: 112.1 bits (279), Expect = 1.000e-21
Identity = 52/84 (61.90%), Postives = 68/84 (80.95%), Query Frame = 0 
Query:   11 HISQSMGSISSLIFDPATSINYDFVAGSYLVASIICLALAVASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRWQAGLKAAAK 95
            +I  +M  + S + +P+ SINYDFVAGSY +AS++CLALAV+S+ FEVSSVKGWWIALAPFPP+ +WSLIVR+RW   L++  K
Sbjct:  109 NIKAAMIPLISSVLEPSPSINYDFVAGSYFIASLLCLALAVSSLVFEVSSVKGWWIALAPFPPALVWSLIVRARWHLALESKTK 192
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BLAST of NO04G02140 vs. NCBI_GenBank
Match: CBN78956.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 67.4 bits (163), Expect = 2.800e-8
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 
Query:   26 PATSINYDFVAGSYLVASIICLALAVASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRWQA 88
            P+  INY+FVAGSYLV S+I + L     F  V +V+G W+  APF P   W+L++RS+W A
Sbjct:   22 PSPGINYNFVAGSYLVCSLILVVLLALDKFLHVEAVEGSWVVFAPFLPCLAWALVIRSKWLA 83
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BLAST of NO04G02140 vs. NCBI_GenBank
Match: POM64276.1 (Hypothetical protein PHPALM_20222 [Phytophthora palmivora var. palmivora])

HSP 1 Score: 65.9 bits (159), Expect = 8.300e-8
Identity = 35/75 (46.67%), Postives = 46/75 (61.33%), Query Frame = 0 
Query:   24 FDPATSINYDFVAGSYLVASIICLALAVASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRWQAGLKAAAKSKEE 99
            F P+ +INY+FVAG Y   + +C  L V  + F V  V+G++I L PF P FLWSL+VR RW      A KS +E
Sbjct:    4 FTPSPTINYNFVAGVYAFFTALCALLTV--LHFYVPQVEGFYIVLVPFVPCFLWSLVVRHRWLQQSTTAYKSVDE 76
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BLAST of NO04G02140 vs. NCBI_GenBank
Match: OWZ18052.1 (hypothetical protein PHMEG_0007923 [Phytophthora megakarya])

HSP 1 Score: 62.8 bits (151), Expect = 7.000e-7
Identity = 31/63 (49.21%), Postives = 42/63 (66.67%), Query Frame = 0 
Query:   23 IFDPATSINYDFVAGSYLVASIICLALAVASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRW 86
            +F P+ +INYDFV G Y   + + + LAV  + F  S V+G++I L PF P FLWSL+VR RW
Sbjct:    3 VFKPSPTINYDFVVGVYAFFTAVFVLLAV--LHFYTSQVEGFYIVLVPFVPCFLWSLVVRHRW 63
[Close]
BLAST of NO04G02140 vs. NCBI_GenBank
Match: XP_009519938.1 (hypothetical protein PHYSODRAFT_482848 [Phytophthora sojae] >EGZ24650.1 hypothetical protein PHYSODRAFT_482848 [Phytophthora sojae])

HSP 1 Score: 62.4 bits (150), Expect = 9.200e-7
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 0 
Query:   23 IFDPATSINYDFVAGSYLVASIICLALAVASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRW 86
            +F P+ +INY+FVAG Y   + +C+ L+V  + F    ++G++I L PF P FLWSL+VR RW
Sbjct:    3 VFTPSPTINYNFVAGVYAFFTALCILLSV--LHFYTPQLEGFYIVLVPFVPCFLWSLVVRHRW 63
The following BLAST results are available for this feature:
BLAST of NO04G02140 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 6
Match NameE-valueIdentityDescription
XP_005854297.11.000e-2161.90hypothetical protein NGA_2080720, partial [Nannoch... [more]
EWM28605.11.000e-2161.90hypothetical protein Naga_100009g105 [Nannochlorop... [more]
CBN78956.12.800e-848.39conserved unknown protein [Ectocarpus siliculosus][more]
POM64276.18.300e-846.67Hypothetical protein PHPALM_20222 [Phytophthora pa... [more]
OWZ18052.17.000e-749.21hypothetical protein PHMEG_0007923 [Phytophthora m... [more]
XP_009519938.19.200e-746.03hypothetical protein PHYSODRAFT_482848 [Phytophtho... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009586NSK009586Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G02140.1NO04G02140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578721gene_2005Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g105gene1970Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G02140.1NO04G02140.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G02140 ID=NO04G02140|Name=NO04G02140|organism=Nannochloropsis oceanica|type=gene|length=1943bp
GGATAAGGCGGGAACGAGGCATCAGTGTTCCATGCGTCTCGCGCTGCGAG
CGCTACTATGCCTTGACTGGACCTTTGCCTTGCGTTGCCGATGTGGCATT
TACTGAGCTGGAGGCTTACCACGCATGCCCACCGTACATGCTGGCACAAT
CACAACCTCCTTCGCAAGCTGGTTGTCGTCGTCTTGTTGATTCATATCCC
CCTCAGCTCGGCCATCATCACCTCACTAGAGAGCGAAGCAAAGTCCGTCA
AACGCGCACCAGGATAAACAGAACCGCAATTCTGGTGCATGCAATTATTT
TTTCTATTACCAGGCTTCGGTGAGGGTGTGTTGGTGGCAATCACCCCTAA
GCCCTTATCTCTTAACTCCTGTATTCCACTCTATCTCATGACGCACCATT
CCCACCGCCTCAACCATGAACAACAGCCAACCAACCACGAGTAAGCACAT
CTCCCAATCAATGGGTTCCATATCCTCCCTCATCTTTGATCCGGCCACGT
CCATCAACTACGATTTCGTCGCGGGCTCTTACCTTGTGGCTTCCATAATC
TGCCTGGCGCTGGCCGTAGCTTCTATTTTCTTTGAGGTGTCGTCAGTGAA
AGGATGGTGGATTGCCCTGGCCCCGTTTCCTCCGTCATTTTTATGGAGTT
TGATCGTGCGGTCACGGTGGCAAGCGGGGTTGAAGGCAGCAGCAAAGAGC
AAGGAGGAGTAGGAGGATGGGGTGCAGGGGTTGGGATAGCTGGGAGGTAT
GAAGTGACAAAAGGGCGGGATGGAATTGCTGTACTCATAGTGGTGAGAAG
AAGAAAGAAGAAGAACTGGGGCAGGGGGAGAGATTGAGGGAAACGTGCAT
TTTGTATATAAAATTTAACATAGAAATTGCCCCTGCATGGCGCCGATCAA
GCAGAGGTGAGGGAGGGAGAGAAGAGAGAAAAGGATTAGCGTAACAACAA
AATTTTCACGGATCAAGAAATAACTAGTACATGTGGAGCATGAGATTTCA
CCTCATAACTAATTGAAAAATACCCCATCAAATTTCGATATGTTTATTTT
TCTTCTCTGCTCGAGGCACACGCCCTCACTTATGCACCTGCGCTCAAAGA
TGCAAACGAATGTCCTGCAGGACTCAAAACGACCCATTATTATCTTCCTA
TAACTTAGCTTTTCTTCTTTTGAAGTGGTGGTCATCCAAATTTCTTCGTC
TCCTTTCCAAGATCTGCGCCCGAGCAAGAAGGGAACTAACAGGGGGAAAC
GGGCGCAGCCAAACATTTCCGACAGAATGCACGAGGTTGCGTCGCCCTAT
CTGCATCCTGACCAACAGTAACGCACTCCTATGACACCTCGAGAAAAATC
TTTGCCCTCCGGCAGAGGAATTGTCCAGGTGCTTTTAAATTTTGAGCCAT
CGCAAATCAAAGAAATAACCGACGTAGAGATGTCTTGACCCCCCCCCTCC
CCCCAAAATGCTCTCACTACCATCCGGCCGCTCTGGGTGCGGGCTTCACT
CATATTATAGATAAGAAAAATAGTTGAGAACGATGCGGAAAATTTCACTT
GCTTATTGAATGTGGAGATTTTTATTCTGCCCGTGCGCTTATTGGCTCTC
GACTACGATCTGCAGAAAAGACCCCAATGCAGATAGAGAAACCGGAGTCG
TCAATCAATTGCACGTGGCTGACGATTTCTTCTGGCCAAACATTGACTTC
TGGACCCTCTTTTCGAAAAACAAAATCATGTCTAGGCAGCATTTTACTCT
ATTCAGTGGCGTTGTGGCGTTGTCGCATGAGAGGGGCCATGGCAACTCTC
ACCCGAGATGGCGAACACCACGTACGGCCGTCGTAACTGATGACATCCTG
TGACGGGATGACGATGGGATGACGATGTCATCAGTTGCGAGTGACGGCAT
GGAGGGCTCCCATTTCATCCGTAGGCAGACACACATCCGTGTC
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protein sequence of NO04G02140.1

>NO04G02140.1-protein ID=NO04G02140.1-protein|Name=NO04G02140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=99bp
MNNSQPTTSKHISQSMGSISSLIFDPATSINYDFVAGSYLVASIICLALA
VASIFFEVSSVKGWWIALAPFPPSFLWSLIVRSRWQAGLKAAAKSKEE*
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Synonyms
Publications