NO04G01990, NO04G01990 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G01990
Unique Name	NO04G01990
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2199
Alignment location	chr4:580258..582456 +

Link to JBrowse

Properties


Property Name	Value
Description	Dna-directed rna polymerase iii subunit rpc3

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:580258..582456 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
PRJNA769958	2024-08-13
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR036390	WH_DNA-bd_sf
IPR013197	RNA_pol_III_RPC82-rel_HTH

Vocabulary: **Biological Process**
Term	Definition
GO:0032774	RNA biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0005666	RNA polymerase III complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0003899	DNA-directed 5'-3' RNA polymerase activity
GO:0003697	single-stranded DNA binding

Homology

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: EWM28604.1 (dna-directed rna polymerase iii subunit rpc3 [Nannochloropsis gaditana])

HSP 1 Score: 592.0 bits (1525), Expect = 2.500e-165
Identity = 378/732 (51.64%), Postives = 450/732 (61.48%), Query Frame = 0

Query:    1 MSVSPLYGGASSSNQQYKLALNILNEHFGSVVRDVGAYVLRRGRCTLAEARRDIVDEEGHRHKLSQIKDALVVLIQHNLLIVAMPTAEEIQRVHPRVFFYYQMDLDGVTVRLRFPKFLLRARQLYGEEGQAVLESVMLHGRLPFSQLHSQVESTMQTRRQAAIAAGLVNNSEDKGXXXXXXXXXXXXXXXXXXXXXXXKAYLMTGAKLQALIHKMITSHYLVRVVPFDLLTPSPEALTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGRRLDTQDESQDDEAIPVELAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQGEFSLSSLLAAGDSLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAELTRKVSLPPSVTVKMYMDVLQNDPVRVVGFEGGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            M VSP  GG SS+NQQYKLALNILNEHFG VV+D+G+Y+LRRGRCTLAE  RD  +  G+ HKL  IK+ALV+L+QHNLL+VAMPT++E+ R H +   YYQMDLD VT+RLRFPKFLLRARQL+GE GQA +E+VM HGRLP S++ +QV  + + R   A  A         G                        A       ++ L+ KMI  HYLVRV+P DL+TPSP+ALTS        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX           + DE + +E+                                                                                                                                              GE SL+  + AGD +LW+VG+EQFHRDLRHV C++FVRQKVNTTAESLVR+IL+HSLPLE    V   RS+ LSL EL+ +V LPP+VTVKMY++VLQNDPV++V  EG  +  VY V LG I E+LRQRT+HSI+RERY++D+K+ DGDRNARICRVLL+KK+LD QQ+SE+AMMSLRETRERLY MY D ++T QEIPRRADHHPNQTF+LWTFNM+QV EE+ QRMYKGALNLRLRRQKET+EK+DLLANK+NIRD+VEAAHFDQLT  LDRLDQALENLD TLMLFTVF
Sbjct:    1 MVVSPHPGGVSSANQQYKLALNILNEHFGPVVQDIGSYILRRGRCTLAEIWRDSDNRNGNLHKLGLIKEALVILLQHNLLVVAMPTSDEMLRKHTKPLIYYQMDLDAVTMRLRFPKFLLRARQLFGEGGQAAVEAVMRHGRLPLSKILAQVGESYKARYNIATVADHTQTLMGSG---------------DGEAGSGATACADASVDVEDLVRKMILEHYLVRVLPLDLVTPSPDALTS---VGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGGGKEGDEIVSLEIGRSLGAEEGVAAPYVSSGGEGPVGGPLSILARKRFKRRSGVDEGHKAAGIDENGNGFHPGPSKKVVGSGEAWEGVRGPGGGEGEGTETGQAEGKFPTGRRRSDLEGIVEEDEEADGKTWVG---------------------GEESLAEWVGAGDEVLWRVGVEQFHRDLRHVTCLRFVRQKVNTTAESLVRAILQHSLPLERDGTVAPPRSQPLSLGELSSRVQLPPNVTVKMYLEVLQNDPVQIVDREGTAT-DVYCVCLGRIIESLRQRTLHSIIRERYTTDSKACDGDRNARICRVLLDKKYLDPQQVSELAMMSLRETRERLYRMYADLLLTVQEIPRRADHHPNQTFYLWTFNMQQVVEELTQRMYKGALNLRLRRQKETKEKRDLLANKENIRDDVEAAHFDQLTTTLDRLDQALENLDATLMLFTVF 692

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: XP_024581858.1 (dna-directed rna polymerase iii subunit rpc3 [Plasmopara halstedii] >CEG45489.1 dna-directed rna polymerase iii subunit rpc3 [Plasmopara halstedii])

HSP 1 Score: 166.8 bits (421), Expect = 2.600e-37
Identity = 102/301 (33.89%), Postives = 165/301 (54.82%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEH------------GDVVNCERSRGLSLAE-------LTRKVSLPPSVTVKMYMDVLQN--DPVRVVGFEGGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G+ Q  RDLRH  C++F  + +N  A  +V ++L+HS P E              D+ N E  +    +E       L   +++       M M V Q   DP +         GG Y V +  I E L+Q T+H+ ++++Y        G  +ARI R+L+EK+ L+Q+ + E+A++   + R RLY +Y D++V  QEIP+RADH+P  TFF W+ ++ Q+   + +R+      LR RR+ E EE K+L+A  + + + ++   FD+L+ +LDRLD+A+ +LD  LMLF  F
Sbjct:  353 SLVWRFGMTQMLRDLRHKTCIRFASENINAVAGVIVEAMLQHSSPREREKDEATSAPVSARDLFNMESVKKALPSESNNPWRLLLNYITVMCRDKSGMIMKVAQEAFDPTKA----RASDGGQYVVHMQKIVEFLQQATVHAYIQDKY--------GVASARIVRLLMEKRQLEQKSIGELALLPSNDARHRLYELYTDKLVKLQEIPKRADHNPAFTFFCWSVDVLQMQTRITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEALDIDKFDKLSRSLDRLDRAIIHLDGMLMLFRDF 641

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: KUF80646.1 (DNA-directed RNA polymerase III subunit RPC3 [Phytophthora nicotianae])

HSP 1 Score: 165.2 bits (417), Expect = 7.400e-37
Identity = 104/303 (34.32%), Postives = 166/303 (54.79%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAEL----TRKVSLPPSVT-----------------VKMYMDVLQN--DPVRVVGFEGGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G+ Q  RDLRH  C++F  + +N  A  +V ++L+HS P E     +   S  +S  +L    + K +LPP                      M M V Q   DP++       G GG Y V +  I E L+Q T H+ ++++Y        G  +ARI R+L+EK+ L+Q+ + E+A++   + R RLY +Y D+++  QEIP+RADH+P  TFF W+ ++ Q+   V +R+      LR RR+ E EE K+L+A  + + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:  381 SLVWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREK--DEPTSAPVSARDLFNMESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPIQA----RAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARVTERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 669

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: XP_008909784.1 (hypothetical protein PPTG_14610 [Phytophthora parasitica INRA-310] >ETI40374.1 hypothetical protein F443_14215 [Phytophthora parasitica P1569] >ETL33904.1 hypothetical protein L916_13752 [Phytophthora parasitica] >ETM40367.1 hypothetical protein L914_13664 [Phytophthora parasitica] >ETN04847.1 hypothetical protein PPTG_14610 [Phytophthora parasitica INRA-310] >ETO69086.1 hypothetical protein F444_14234 [Phytophthora parasitica P1976] >ETP10200.1 hypothetical protein F441_14110 [Phytophthora parasitica CJ01A1] >ETP38287.1 hypothetical protein F442_14057 [Phytophthora parasitica P10297])

HSP 1 Score: 164.1 bits (414), Expect = 1.700e-36
Identity = 102/299 (34.11%), Postives = 168/299 (56.19%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAEL----TRKVSLPPSVT-----VKMYMDVLQNDPVRVV------GFE----GGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G+ Q  RDLRH  C++F  + +N  A  +V ++L+HS P E     +   S  +S  +L    + K +LPP        +  Y+ V+  D   +V       F+      G GG Y V +  I E L+Q T H+ ++++Y        G  +ARI R+L+EK+ L+Q+ + E+A++   + R RLY +Y D+++  QEIP+RADH+P  TFF W+ ++ Q+   + +R+      LR RR+ E EE K+L+A  + + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:  370 SLVWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREK--DEPTSAPVSARDLFNMESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 658

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: ETK80479.1 (hypothetical protein L915_13855 [Phytophthora parasitica])

HSP 1 Score: 164.1 bits (414), Expect = 1.700e-36
Identity = 102/299 (34.11%), Postives = 168/299 (56.19%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAEL----TRKVSLPPSVT-----VKMYMDVLQNDPVRVV------GFE----GGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G+ Q  RDLRH  C++F  + +N  A  +V ++L+HS P E     +   S  +S  +L    + K +LPP        +  Y+ V+  D   +V       F+      G GG Y V +  I E L+Q T H+ ++++Y        G  +ARI R+L+EK+ L+Q+ + E+A++   + R RLY +Y D+++  QEIP+RADH+P  TFF W+ ++ Q+   + +R+      LR RR+ E EE K+L+A  + + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:  370 SLVWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREK--DEPTSAPVSARDLFNMESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 658

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: ETL87177.1 (hypothetical protein L917_13558 [Phytophthora parasitica])

HSP 1 Score: 164.1 bits (414), Expect = 1.700e-36
Identity = 102/299 (34.11%), Postives = 168/299 (56.19%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAEL----TRKVSLPPSVT-----VKMYMDVLQNDPVRVV------GFE----GGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G+ Q  RDLRH  C++F  + +N  A  +V ++L+HS P E     +   S  +S  +L    + K +LPP        +  Y+ V+  D   +V       F+      G GG Y V +  I E L+Q T H+ ++++Y        G  +ARI R+L+EK+ L+Q+ + E+A++   + R RLY +Y D+++  QEIP+RADH+P  TFF W+ ++ Q+   + +R+      LR RR+ E EE K+L+A  + + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:  370 SLVWRFGVTQLLRDLRHKACIRFATENINAVAGVIVTAMLQHSAPREREK--DEPTSAPVSARDLFNMESVKNALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQARAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 658

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: XP_009519965.1 (hypothetical protein PHYSODRAFT_487168, partial [Phytophthora sojae] >EGZ24677.1 hypothetical protein PHYSODRAFT_487168, partial [Phytophthora sojae])

HSP 1 Score: 163.7 bits (413), Expect = 2.200e-36
Identity = 102/303 (33.66%), Postives = 165/303 (54.46%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAELTR--------KVSLPPSVT-----VKMYMDVLQNDPVRVV------GFE----GGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G+ Q  RDLRH  C++F  + +N  A  +V ++L+HS P E       E+    S     R        K +LPP        +  Y+ V+  D   +V       F+      G GG Y V +  I E L+Q T H+ ++++Y        G  +ARI R+L+EK+ L+Q+ + E+A++   + R RLY +Y D+++  QEIP+RADH+P  TFF W+ ++ Q+   + +R+      LR RR+ E EE K+L+A  + + +  +   FD+L+ +LDRLD+A+ +LD  LML+  F
Sbjct:  312 SLVWRFGVTQLLRDLRHKACIRFATENINAVAGVIVAAMLQHSSPRER------EKDEPTSFPVSARDLFDMESVKKALPPEANNPWRLLLNYIMVMCRDKSGMVMKVAQEAFDPTQTRAGDGGQYVVHMQKIVEFLQQATTHAYIQDKY--------GVASARIVRLLMEKRQLEQKTIGELALLPSNDARHRLYELYTDKLLKMQEIPKRADHNPAFTFFCWSVDVPQMQARITERVQDSLCRLRRRRKFEAEENKELIARSEQLVEANDLDKFDKLSRSLDRLDRAIIHLDGMLMLYRDF 600

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: XP_008866271.1 (hypothetical protein H310_03957 [Aphanomyces invadans] >ETW04833.1 hypothetical protein H310_03957 [Aphanomyces invadans])

HSP 1 Score: 159.8 bits (403), Expect = 3.100e-35
Identity = 97/303 (32.01%), Postives = 160/303 (52.81%), Query Frame = 0

Query:  452 DSLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHG---------------------DVVNCERSRGLSLAE-LTRKVSLPPSVTVKMYMDVLQNDPVRVVGFEGGGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            ++ +W+ G  Q  R+LRH  C++F  + +N  A+++V+++L HS P E                       D V  +  R   L   LT     P  +  K   +V   DP   V     G GG YSV + NI   L+++++ + V E+Y        G  +AR+ RV+ E++ L+Q+ L EMA++   ETR RL+ MY D+++  QEIP+R D++P  T + W+ +  ++   +++R     + LR RR+ E E  KDL+A  D + ++ +   FD+++ +LDRLD+A  +LD  LMLF  F
Sbjct:  330 ENTIWRYGGVQLTRELRHRTCIQFAHESINVVAQAIVKAMLAHSSPHERDANEATSFPMTARDLFAIPEVHDAVPSKHDRWKMLLNFLTAMCQHPSGMLTKTAPEVF--DPTHAV---RAGDGGTYSVHMQNIVRTLQRKSIQAFVHEKY--------GAASARLVRVITEQRQLEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSIDDARLTRRLLERAQSTIVKLRARRKGEAESHKDLIARSDQLVEQNDLDKFDRVSRSLDRLDRATLHLDHMLMLFDQF 619

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: CCI45446.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 156.0 bits (393), Expect = 4.500e-34
Identity = 98/299 (32.78%), Postives = 164/299 (54.85%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAELTR----KVSLPPSV-----TVKMYMDVLQNDP----VRVVGFEG------GGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G +Q  R+LRH   V+F  + VN  A  +V ++L +S  + H    N   S  ++  E+ +    K +LP  +      +  Y+ V+  D      RV   +       GG GG Y V + NI + L+Q TMH+ +++++        G ++ARI R++LEK+ L+Q+ + E+A++ L E R RLY +Y D+++  QEIP+R+DH+P  T + W+ N   +   + +R+      LR RR    +E K+L+A    + +E +   FD+L+  LDRLD+++  LDE LML+  F
Sbjct:  339 SLVWRCGTDQLLRELRHDAFVRFAMENVNHVAGVIVSAMLSYS--MSHERESNEPTSFPMTAREIYKVDEVKQALPKEIKDTWRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKF--------GVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEKFDKLSQGLDRLDRSILQLDENLMLYRDF 627

[Close]

BLAST of NO04G01990 vs. NCBI_GenBank
Match: CCI45447.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 156.0 bits (393), Expect = 4.500e-34
Identity = 98/299 (32.78%), Postives = 164/299 (54.85%), Query Frame = 0

Query:  453 SLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEHGDVVNCERSRGLSLAELTR----KVSLPPSV-----TVKMYMDVLQNDP----VRVVGFEG------GGSGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLEKKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTFFLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEVEAAHFDQLTIALDRLDQALENLDETLMLFTVF 733
            SL+W+ G +Q  R+LRH   V+F  + VN  A  +V ++L +S  + H    N   S  ++  E+ +    K +LP  +      +  Y+ V+  D      RV   +       GG GG Y V + NI + L+Q TMH+ +++++        G ++ARI R++LEK+ L+Q+ + E+A++ L E R RLY +Y D+++  QEIP+R+DH+P  T + W+ N   +   + +R+      LR RR    +E K+L+A    + +E +   FD+L+  LDRLD+++  LDE LML+  F
Sbjct:  359 SLVWRCGTDQLLRELRHDAFVRFAMENVNHVAGVIVSAMLSYS--MSHERESNEPTSFPMTAREIYKVDEVKQALPKEIKDTWRLLLNYLAVMVRDKSGMLTRVAAEKADATTTQGGDGGQYVVHMKNITDYLKQATMHAYIQDKF--------GVQSARIVRLILEKRQLEQKSIGELALLPLNEARRRLYDLYRDKLIHLQEIPKRSDHNPVHTMYTWSVNTFHIERVIRERVQDSICKLRSRRDFIAKENKELIARSSQLVEENDLEKFDKLSQGLDRLDRSILQLDENLMLYRDF 647

The following BLAST results are available for this feature:

BLAST of NO04G01990 vs. NCBI_GenBank

BLAST of NO04G01990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28604.1	2.500e-165	51.64	dna-directed rna polymerase iii subunit rpc3 [Nann...	[more]
XP_024581858.1	2.600e-37	33.89	dna-directed rna polymerase iii subunit rpc3 [Plas...	[more]
KUF80646.1	7.400e-37	34.32	DNA-directed RNA polymerase III subunit RPC3 [Phyt...	[more]
XP_008909784.1	1.700e-36	34.11	hypothetical protein PPTG_14610 [Phytophthora para...	[more]
ETK80479.1	1.700e-36	34.11	hypothetical protein L915_13855 [Phytophthora para...	[more]
ETL87177.1	1.700e-36	34.11	hypothetical protein L917_13558 [Phytophthora para...	[more]
XP_009519965.1	2.200e-36	33.66	hypothetical protein PHYSODRAFT_487168, partial [P...	[more]
XP_008866271.1	3.100e-35	32.01	hypothetical protein H310_03957 [Aphanomyces invad...	[more]
CCI45446.1	4.500e-34	32.78	unnamed protein product [Albugo candida]	[more]
CCI45447.1	4.500e-34	32.78	unnamed protein product [Albugo candida]	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL079	nonsL079	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR059	ncniR059	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR109	ngnoR109	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK009604	NSK009604	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G01990.1	NO04G01990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578671	gene_1989	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100009g89	gene1983	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G01990.1	NO04G01990.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G01990 ID=NO04G01990|Name=NO04G01990|organism=Nannochloropsis oceanica|type=gene|length=2199bp
ATGTCCGTTTCACCACTCTACGGCGGAGCCTCCTCCTCAAACCAGCAGTA
TAAGCTGGCCCTGAATATTTTAAACGAGCATTTTGGTTCCGTCGTCCGCG
ATGTAGGCGCCTACGTCTTGCGTCGCGGCCGATGTACCCTAGCCGAGGCC
CGACGGGACATCGTGGACGAAGAGGGACACCGCCACAAGCTCAGCCAAAT
CAAAGACGCCCTCGTCGTTCTGATACAACACAATCTCCTCATTGTCGCTA
TGCCTACAGCTGAGGAAATTCAACGCGTGCATCCCCGCGTCTTTTTCTAC
TACCAGATGGACCTTGACGGGGTGACCGTCCGTCTACGCTTCCCCAAGTT
CCTCCTCCGCGCCCGACAGCTTTACGGTGAAGAGGGACAGGCAGTGCTAG
AAAGTGTCATGCTGCATGGGCGTTTGCCCTTCTCCCAGCTCCATTCCCAG
GTGGAATCCACAATGCAAACACGTCGACAAGCTGCCATTGCTGCAGGCCT
AGTCAATAATAGTGAGGACAAGGGCGAGGACAACGTCAATAAGCCCAACA
GCGGCAACAACATGAGCAGCAACAGCAGCAGTAGCAGCAACAGAAAAGCT
TACCTAATGACCGGTGCCAAGCTCCAAGCACTAATCCACAAAATGATCAC
CTCTCACTACCTCGTCCGTGTCGTTCCCTTCGATCTTCTCACGCCCTCCC
CTGAAGCTCTGACCAGCGCTGGTGCCGCAGCTGCTATCCGTGGCTCCCGC
GCAGCTGCCAATAAAGCAGCAGCAGCTGCAGCGGCTGACGCGACCGCGCG
AGCATCGGAGGCGTTGGCGATTAAGAAAAGGGGCAGGAGACTTGATACTC
AAGATGAGAGTCAGGATGACGAAGCGATTCCTGTGGAGCTAGCCATGATG
CTGCCCCCGGAGGAGAAGGGGGGAGGAAAAGCGAACGATAGCACGAAAAA
GAGGATGAGGACGAAAGGCTACGGGGCCGAGGAGGGGGAGGGGAGGGAGG
AGGAAGAGGAGGAAGGGGAGGAGGAAGAGAAGGAAGATCAGGAGGAGGGA
GATGTTGGTGCTCGTAAATCGGCCGCTGCAGCTGCGCGAAATCAGAATAA
GAAAGCGAAAAGGCGTATAGACGAAGAGGAGGAGCACGAAGACGACGGGG
AGGGTGCACATATTAGGAAGAGAGATAAGTCAATGGGAAGAGCAGCGGCG
GCAGAAGCAGCAAAGAGAAGTCGGCTGCAAGAGATTGTGGAGGAAGACGA
GGACATACGACAGACCCTCAGCAGGTCCGCCACGGCCAATGCCGCCATCG
CTACCGGCCTAGGGCAAGGTGAGTTTTCTCTTTCCTCGTTGCTAGCAGCG
GGGGATAGTCTGCTCTGGAAGGTGGGCTTGGAACAGTTCCATCGGGACTT
GCGGCATGTGTGTTGTGTGAAGTTTGTCAGGCAGAAGGTGAACACCACGG
CCGAGTCCCTTGTGCGGTCCATCTTAGAGCACAGCTTGCCATTGGAGCAT
GGAGATGTGGTGAATTGTGAACGGTCCCGGGGTCTAAGCTTGGCGGAGTT
GACGAGGAAAGTGTCGTTGCCGCCCAGTGTGACGGTGAAGATGTACATGG
ACGTGCTGCAAAATGACCCCGTGCGGGTCGTGGGGTTTGAGGGAGGGGGA
AGCGGAGGGGTCTACAGTGTGTTTTTGGGAAATATCTGCGAGAATTTGAG
ACAGAGGACAATGCATAGTATTGTGAGGGAAAGATATAGCAGTGACGCGA
AGAGTAGTGATGGGGATCGGAACGCGCGGATTTGCAGGGTATTGTTGGAG
AAGAAATTCTTGGATCAACAGCAACTAAGTGAGATGGCCATGATGAGTTT
GCGGGAGACGAGGGAAAGGTTATATTACATGTATATGGACGAGATGGTGA
CTTTCCAGGAAATTCCTCGCAGAGCGGATCATCACCCGAACCAGACGTTT
TTCCTGTGGACTTTCAACATGAAGCAGGTCGGGGAGGAAGTCGTGCAAAG
GATGTACAAAGGGGCATTAAATTTACGCTTGAGACGACAGAAGGAAACTG
AGGAGAAGAAAGATTTGTTGGCCAATAAGGACAATATCAGGGATGAGGTA
GAGGCTGCGCATTTTGACCAGTTGACCATAGCGCTGGATCGACTCGACCA
GGCATTAGAGAATCTAGATGAGACCCTCATGTTGTTTACGGTGTTTTAG

protein sequence of NO04G01990.1

>NO04G01990.1-protein ID=NO04G01990.1-protein|Name=NO04G01990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=733bp
MSVSPLYGGASSSNQQYKLALNILNEHFGSVVRDVGAYVLRRGRCTLAEA
RRDIVDEEGHRHKLSQIKDALVVLIQHNLLIVAMPTAEEIQRVHPRVFFY
YQMDLDGVTVRLRFPKFLLRARQLYGEEGQAVLESVMLHGRLPFSQLHSQ
VESTMQTRRQAAIAAGLVNNSEDKGEDNVNKPNSGNNMSSNSSSSSNRKA
YLMTGAKLQALIHKMITSHYLVRVVPFDLLTPSPEALTSAGAAAAIRGSR
AAANKAAAAAAADATARASEALAIKKRGRRLDTQDESQDDEAIPVELAMM
LPPEEKGGGKANDSTKKRMRTKGYGAEEGEGREEEEEEGEEEEKEDQEEG
DVGARKSAAAAARNQNKKAKRRIDEEEEHEDDGEGAHIRKRDKSMGRAAA
AEAAKRSRLQEIVEEDEDIRQTLSRSATANAAIATGLGQGEFSLSSLLAA
GDSLLWKVGLEQFHRDLRHVCCVKFVRQKVNTTAESLVRSILEHSLPLEH
GDVVNCERSRGLSLAELTRKVSLPPSVTVKMYMDVLQNDPVRVVGFEGGG
SGGVYSVFLGNICENLRQRTMHSIVRERYSSDAKSSDGDRNARICRVLLE
KKFLDQQQLSEMAMMSLRETRERLYYMYMDEMVTFQEIPRRADHHPNQTF
FLWTFNMKQVGEEVVQRMYKGALNLRLRRQKETEEKKDLLANKDNIRDEV
EAAHFDQLTIALDRLDQALENLDETLMLFTVF*

Synonyms

Publications