NO04G01890, NO04G01890 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01890 vs. NCBI_GenBank
Match: XP_005854524.1 (glutamine amidotransferase [Nannochloropsis gaditana CCMP526] >EKU21834.1 glutamine amidotransferase [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 376.7 bits (966), Expect = 1.500e-100 Identity = 190/268 (70.90%), Postives = 210/268 (78.36%), Query Frame = 0 Query: 7 TAPCIGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSAVFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVY--------------------------XXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 + PCIGILALQGAFEEH KI++ELGARTVEVRLP+DL+K+LDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKP+WGTCAGMILLSN+A+MQK GGQPLIGGLDVEVCRN+FGSQ+SSFEV+L LEGAAA GSLG+ GPVSAVFIRAPAILEAGP V VLARVKATPCA+AR C+EEVY +EDG+MEV+VAVQQG LLATAFHPELTPERWWHQYF+S+ Sbjct: 7 SGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKNLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPSPLVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSM 274
BLAST of NO04G01890 vs. NCBI_GenBank
Match: EWM28536.1 (pyridoxal biosynthesis protein pdx2 [Nannochloropsis gaditana]) HSP 1 Score: 376.3 bits (965), Expect = 2.000e-100 Identity = 190/268 (70.90%), Postives = 209/268 (77.99%), Query Frame = 0 Query: 7 TAPCIGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSAVFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVY--------------------------XXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 + PCIGILALQGAFEEH KI++ELGARTVEVRLP+DL+KDLDGLIIPGGESTAMAIVG RHGIFPKLKAFVQGGKP+WGTCAGMILLSN+A+MQK GGQPLIGGLDVEVCRN+FGSQ+SSFEV+L LEGAAA GSLG+ GPVSAVFIRAPAILEAGP V VLARVKATPCA+AR C+EEVY +EDG+MEV+VAVQQG LLATAFHPELTPERWWHQYF+S+ Sbjct: 7 SGPCIGILALQGAFEEHRKIVQELGARTVEVRLPDDLDKDLDGLIIPGGESTAMAIVGARHGIFPKLKAFVQGGKPIWGTCAGMILLSNRAIMQKAGGQPLIGGLDVEVCRNFFGSQVSSFEVLLQLEGAAAAGSLGSRGPVSAVFIRAPAILEAGPGVEVLARVKATPCAQARHCVEEVYREQQKQREELLQREGRPSAPPPSVPTAASEDGARGRGRSGGEKTCMEREEDGRMEVVVAVQQGHLLATAFHPELTPERWWHQYFMSM 274
BLAST of NO04G01890 vs. NCBI_GenBank
Match: EWM28611.1 (ww domain binding protein 4 (formin binding protein 21) [Nannochloropsis gaditana]) HSP 1 Score: 303.9 bits (777), Expect = 1.200e-78 Identity = 220/416 (52.88%), Postives = 258/416 (62.02%), Query Frame = 0 Query: 267 MSEYWRSTPKYCCKFCNVWMDDNTTSRRLHDGGARHKQAVEDFFKAKREAKRQGSLDDGEVSKELRAIEKAAQAQADLDAAMF-----------------------GIGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEPEGRYSVDGVFYLEGKHFPEKLVTGTRCEVWAEGEDEWREGRVARVHVTAVPNTTLVLRKFAVAFVKRKMAXXXXXXXXXXXXXXXXXXXXXXXXXXXEDITPDRIRMVEA-HLLGTVQRPLXXXXXXXXXXMDTGLGGWQTVSVRTFDEEAEKKASLKAIKAETKKRKKEDAEKRSKMIEEAMEGEDALSSYDPHNRGMYKGIDLNAAARGEGGREGE-VLLGEVGGATVDIDLGGDKDGPVAFK 658 M++YW+STPK+CCKFCNVWMDDN TSRRLH+GGARHKQAVE+FFKA+REAKRQGS+ DGE+SKELR IEKAAQAQA+ DAAMF XXXXXXXXXXXXXXXXXXXXXXX E EGRY+VDGV +LEGK +LV GT C+VW E +D WRE V+RV VTAVPNT+L LRKF+V R+ E + DRIR+VE H +G V LXXXXXXXXXX TGLGGWQTVSVR DEEAE+KAS A++A R++M+ EAMEGEDA+SSYDPH RG+YKG+DL GG EG ++GEVGGA +++DLGGD+ GPVAF+ Sbjct: 1 MADYWKSTPKHCCKFCNVWMDDNKTSRRLHEGGARHKQAVEEFFKAQREAKRQGSIGDGELSKELREIEKAAQAQAEKDAAMFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPSHRVRGDVDGWRDVKKEEREVNGGSEDVTGGSAAAEVEGRYTVDGVTFLEGKAVETRLVRGTPCQVWVEKDDAWREAIVSRVEVTAVPNTSLTLRKFSVILGARR----PDGGKEAREGQAAVTQGEEEAKEVEEGVLSDRIRLVEGEHSMGGVD-TLXXXXXXXXXXXXTGLGGWQTVSVRMVDEEAERKASEAAVRAXXXXXXXXXXXXRARMLAEAMEGEDAMSSYDPHGRGIYKGMDLKV-----GGTEGSGAIVGEVGGAALEVDLGGDQAGPVAFR 406
BLAST of NO04G01890 vs. NCBI_GenBank
Match: CBJ32119.1 (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 230.7 bits (587), Expect = 1.300e-56 Identity = 149/270 (55.19%), Postives = 185/270 (68.52%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGA-------AGPVSAVFIRAPAILEAGPNVHVLARVKATPCAKARTCIE-------------------------EVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 IGILALQGAF EH ++ +LGA EVRLP + E LDG+++PGGESTAMA++GER G+FP+LK +V G+PVWGTCAGMILLS+ A+MQK GGQ L+GGL+VE+CRNYFG+Q SSFEV LD A GS+G P AVFIRAPA+LEAGP V VL +V++ PC KA T ++ XXXXXXXXXXXXXXXXXXXXXX EV+VA+++G ++ TAFHPELT + WH+YF+ + Sbjct: 23 IGILALQGAFAEHSSLLSKLGADVREVRLPHEFE-GLDGIVLPGGESTAMALIGERWGVFPRLKQWVSEGRPVWGTCAGMILLSDHALMQKKGGQSLVGGLNVEICRNYFGAQTSSFEVPLD-TSALETGSVGKKDGGSANKNPYPAVFIRAPAVLEAGPGVDVLCKVRSRPCNKAVTVMKAQLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEVIVAIRKGNIVGTAFHPELTNDSRWHEYFVRI 290
BLAST of NO04G01890 vs. NCBI_GenBank
Match: XP_010253632.1 (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Nelumbo nucifera]) HSP 1 Score: 214.2 bits (544), Expect = 1.300e-51 Identity = 126/245 (51.43%), Postives = 157/245 (64.08%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDL-EGAAAEGSLGAAGPVSA--VFIRAPAILEAGPNVHVLARV----KATPCAKARTCIEEVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 +G+LALQG+F EH ++R +G + +E+R PE L+ ++ LIIPGGEST MA + E H +FP L+ FV+ GKPVWGTCAG+I L+NKAV QK+GGQ LIGGLD V RN+FGSQI SFE L + E AA EG GP S+ VFIRAPAILEAGP V VLA K +K+ T +EV + K +V+VAV+QG LLATAFHPELT + WH YFL + Sbjct: 3 VGVLALQGSFNEHIAVLRRIGVKGIEIRKPEQLQ-NVHALIIPGGESTTMAKLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKAVGQKEGGQELIGGLDCTVHRNFFGSQIQSFEAELSVPELAAKEG-----GPQSSRGVFIRAPAILEAGPEVEVLADYPIPSKKLTDSKSVTGNQEV-----------------------KIGSKDKVIVAVRQGNLLATAFHPELTADTRWHSYFLKM 218
BLAST of NO04G01890 vs. NCBI_GenBank
Match: XP_010264707.1 (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Nelumbo nucifera]) HSP 1 Score: 210.7 bits (535), Expect = 1.400e-50 Identity = 120/238 (50.42%), Postives = 146/238 (61.34%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSAVFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 +G+LALQG+F EH +R +G + VE+R PE L+ ++D LIIPGGEST MA + E H +FP LK FV+ GKPVWGTCAG+I L+NKA+ QK+GGQ LIGGLD V RN+FGSQI SFE L + AA+ G VFIRAPAILEAGP V VLA AK T + K +V+VAV+QG LL TAFHPELT + WH YFL + Sbjct: 3 VGVLALQGSFNEHIAALRRIGVKGVEIRKPEQLQ-NVDALIIPGGESTTMAKLAEYHNLFPALKEFVKMGKPVWGTCAGLIFLANKAIGQKEGGQELIGGLDCTVHRNFFGSQIQSFEAELPVPELAAKE--GGHESFRGVFIRAPAILEAGPEVEVLADYPVP--AKKLT-----------------DSKFAAGNQQETTESKGKVIVAVRQGNLLGTAFHPELTADTRWHSYFLKM 218
BLAST of NO04G01890 vs. NCBI_GenBank
Match: XP_004251122.1 (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Solanum lycopersicum]) HSP 1 Score: 209.9 bits (533), Expect = 2.500e-50 Identity = 120/240 (50.00%), Postives = 148/240 (61.67%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSAVFIRAPAILEAGPNVHVLARV--KATPCAKARTCIEEVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 +G+LALQG+F EH +++ LG + VEVR PE L ++ LIIPGGEST MA + E H +FP L+ FVQ GKPVWGTCAG+I L+NKA QK GGQ LIGGLD V RN+FGSQI SFE L + AE G AVFIRAPAIL+ GP+V VL+ + A + I++ E GK +V+VAV+QG LLATAFHPELT + WH YFL + Sbjct: 3 VGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQL-LNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAED--GGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQK--------------------EEESTESGK-KVIVAVKQGNLLATAFHPELTADTRWHSYFLKM 218
BLAST of NO04G01890 vs. NCBI_GenBank
Match: XP_006340154.1 (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Solanum tuberosum]) HSP 1 Score: 209.9 bits (533), Expect = 2.500e-50 Identity = 122/240 (50.83%), Postives = 149/240 (62.08%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVS--AVFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 +G+LALQG+F EH +++ LG + VEVR PE L ++ LIIPGGEST MA + E H +FP L+ FVQ GKPVWGTCAG+I L+N+A QK GGQ LIGGLD V RN+FGSQI SFE L + AE GP S AVFIRAPAIL+ GP+V VLA + + IE + E GK +V+VAV+QG LLATAFHPELT + WH YFL + Sbjct: 3 VGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQL-LNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANRATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAE----EGGPPSFRAVFIRAPAILDVGPDVEVLADIPL-------SAIETI-----------NSNPAIPKEEDSTESGK-KVIVAVKQGNLLATAFHPELTADTRWHSYFLKM 218
BLAST of NO04G01890 vs. NCBI_GenBank
Match: XP_015058190.1 (PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX2 [Solanum pennellii]) HSP 1 Score: 209.5 bits (532), Expect = 3.200e-50 Identity = 120/240 (50.00%), Postives = 147/240 (61.25%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDLEGAAAEGSLGAAGPVSAVFIRAPAILEAGPNVHVLARV--KATPCAKARTCIEEVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 +G+LALQG+F EH +++ LG + VEVR PE L ++ LIIPGGEST MA + E H +FP L+ FVQ GKPVWGTCAG+I L+NKA QK GGQ LIGGLD V RN+FGSQI SFE L + AE G AVFIRAPAIL+ GP+V VL+ + A + I+ E GK +V+VAV+QG LLATAFHPELT + WH YFL + Sbjct: 3 VGVLALQGSFNEHIAVLKRLGVKGVEVRKPEQL-LNVSSLIIPGGESTTMAKLAELHNLFPALREFVQMGKPVWGTCAGLIFLANKATGQKTGGQKLIGGLDCTVHRNFFGSQIQSFETELPIPQVVAED--GGPPSFRAVFIRAPAILDVGPDVEVLSDIPLSAIETLNSNPAIQN--------------------EEESTESGK-KVIVAVKQGNLLATAFHPELTADTRWHSYFLKM 218
BLAST of NO04G01890 vs. NCBI_GenBank
Match: PHT26825.1 (putative pyridoxal 5'-phosphate synthase subunit PDX2 [Capsicum baccatum]) HSP 1 Score: 209.1 bits (531), Expect = 4.200e-50 Identity = 118/241 (48.96%), Postives = 150/241 (62.24%), Query Frame = 0 Query: 11 IGILALQGAFEEHGKIIRELGARTVEVRLPEDLEKDLDGLIIPGGESTAMAIVGERHGIFPKLKAFVQGGKPVWGTCAGMILLSNKAVMQKDGGQPLIGGLDVEVCRNYFGSQISSFEVVLDL-EGAAAEGSLGAAGPVS--AVFIRAPAILEAGPNVHVLARVKATPCAKARTCIEEVYXXXXXXXXXXXXXXXXXXXXXXQEDGKMEVMVAVQQGQLLATAFHPELTPERWWHQYFLSL 249 +G+LALQG+F EH +++ LG + V++R PE L+ ++ LIIPGGEST MA + E H +FP L+ FV+ GKPVWGTCAG+I L+NKA QK+GGQ L GGLD V RN+FGSQI SFE L + E AA EG GP S AVFIRAPAI+E GP+V VLA + + A + + +V+VAV+QG LLATAFHPELT + WH YFL + Sbjct: 3 VGVLALQGSFNEHIAVLKRLGVKNVQIRKPEQLQ-NVTSLIIPGGESTTMAKLAEYHNLFPALREFVKMGKPVWGTCAGLIFLANKATGQKNGGQELTGGLDCTVHRNFFGSQIQSFETELPIPEIAAKEG-----GPPSCRAVFIRAPAIIEVGPDVKVLADIPVSSAVTANS-------------------SPAIQSEEELTKSEKKVIVAVKQGNLLATAFHPELTADTRWHSYFLKM 218 The following BLAST results are available for this feature:
BLAST of NO04G01890 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01890 ID=NO04G01890|Name=NO04G01890|organism=Nannochloropsis oceanica|type=gene|length=3444bpback to top protein sequence of NO04G01890.1 >NO04G01890.1-protein ID=NO04G01890.1-protein|Name=NO04G01890.1|organism=Nannochloropsis oceanica|type=polypeptide|length=683bpback to top Synonyms
Publications
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