NO04G01830, NO04G01830 (gene) Nannochloropsis oceanica

Overview
NameNO04G01830
Unique NameNO04G01830
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1845
Alignment locationchr4:535471..537315 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:535471..537315 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G01830 vs. NCBI_GenBank
Match: EWM28623.1 (hypothetical protein Naga_100009g68 [Nannochloropsis gaditana])

HSP 1 Score: 395.2 bits (1014), Expect = 3.700e-106
Identity = 245/546 (44.87%), Postives = 321/546 (58.79%), Query Frame = 0 
Query:    4 STLILGAVVLVAWPPAPSVPFPNPALKHLQAFFSTWTVTRVNPGRFLLPNLLMPAGTWR-TELTDLNFENETGGSLXXXXXXXXXXXXXXXXXXLVHAYAPFDADAQRTNALIEKQLGPMLAKRQQDQQHQQSGAPHVVRIGKLDVTQNRRAAQELLDMDEDAGVGSILTVLHLNVDGDGSGNEEQYHGPRTRQALEDLLDRLHANGGELSIAAT-----PTH-LTLHGEIQSFLKEHPLAFVLGRAEEGVVTEEEAMFTATCEALGWYHCAIVHSKKALLRAAVASLWESVKGGHSGAVIAKLDQGRDALPYQPSDVTAASRGLEDWMVQHGFSLVTHLDIAGPHVQQFVFGPKXXXXXXXXXXXXXXXXVR--------PFEDSVEEVKSMLDMLQDAARRHPETRFGYVTSTGSRGWPAFVAEHFVSAEQEGRVEEVSTSSECRLFLLDCATYALYEEPAGVAKLDVLLDGVQGETLRPRLLSLKSVVQAEKRVLSEEEVEQQQLETTAAVAGGTARPIDEGTPTMAPEAVRQLAVEGLAALC 535
            STL+LGA +L+A PP+PS PFP+PA+KHL  F  +WT TRVNPGR   PN LM    W   ELTDLNF  E    L                  LVH YAPFDA AQRTN LIEK L P L++ +QD+++  +     V + +LD+T+N +AA+++  +D+DA VGS L +L  ++D DG G   +Y GPRTRQ ++ +L  L A  GE  I A+     P + L  H EIQ FL+EHPLAFVLGR EEG VTEEE  F  TC A+ W +CA+V SK+ALLRAAVASL ES++  H G VIAKLD+ RDAL Y+ +    AS  LEDWM+ HGF LV+HLD+  PH+++F+                    VR        P  DS  EV ++LD L +AAR +P  RFGY T+ G +GW AF+  HF   + E  VE++S+S   RLF  DC   ALYE   G   L +LL+ V+  T  PR L+ ++   AE R + +++ E   ++TT  V        DEG P +  EA  +L +  L A C
Sbjct:    3 STLLLGAALLIASPPSPSAPFPSPAVKHLHDFLRSWTATRVNPGRLQWPNSLMTLTKWTGIELTDLNFMTE----LYSCNADGSSSACSTGGIWLVHGYAPFDATAQRTNVLIEKHLTPTLSRARQDERNDMTR----VYVSRLDMTRNPQAAKKIFSIDDDASVGSTLMILRPDLD-DG-GQAAEYRGPRTRQGIKHMLQLLQA--GESPIVASNADVMPVNMLQTHKEIQLFLQEHPLAFVLGRTEEGAVTEEEITFRDTCLAMSWQNCAVVPSKRALLRAAVASLSESLEDNHQGPVIAKLDRVRDALLYRNN----ASTSLEDWMLLHGFPLVSHLDLDSPHLERFILPKPQTRQETEGHKHGPEQGVRQLVIATIQPLNDSDSEVAAVLDALDNAARHNPAVRFGYTTAAGPKGWSAFLNRHFALDDHE--VEKLSSS---RLFFYDCHQRALYEGGTGAENLKLLLEQVEERTQSPRHLTPRARSHAEGRGVKDDD-EGGGIKTTKEV------ECDEGMPKIESEASWRLVLHALVAAC 520
The following BLAST results are available for this feature:
BLAST of NO04G01830 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
20040060080010001200140016001800Expect = 3.70e-106 / Id = 44.87SequenceEWM28623.1
Match NameE-valueIdentityDescription
EWM28623.13.700e-10644.87hypothetical protein Naga_100009g68 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009626NSK009626Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01830.1NO04G01830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578572gene_1970Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g68gene2001Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01830.1NO04G01830.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01830 ID=NO04G01830|Name=NO04G01830|organism=Nannochloropsis oceanica|type=gene|length=1845bp
ATGGTCCTCTCCACTCTCATCCTGGGAGCGGTTGTCCTGGTGGCCTGGCC
GCCGGCCCCCTCTGTCCCCTTCCCGAACCCAGCTCTTAAACATCTGCAGG
CATTCTTCTCCACATGGACAGTTACGCGCGTGAATCCCGGCCGCTTCCTC
CTTCCGAATCTGCTAATGCCGGCGGGCACCTGGAGGACAGAGTTGACAGA
TCTCAACTTTGAAAACGAGACAGGCGGCAGCCTTGACATGGACAGCAACA
GTCACAGCAACAATAGCAACAGCAATTCTACCACCTGGTTGGTACACGCT
TACGCCCCTTTTGATGCCGACGCCCAGCGAACGAACGCCTTGATCGAAAA
GCAATTGGGACCAATGCTGGCGAAGCGGCAACAAGACCAGCAACATCAAC
AATCAGGTGCCCCGCATGTGGTGCGCATAGGCAAGCTAGATGTCACCCAA
AACCGACGGGCCGCTCAGGAGCTACTCGACATGGACGAGGATGCGGGTGT
GGGGTCCATATTAACTGTCTTGCACCTCAATGTCGATGGGGATGGGAGTG
GCAATGAGGAGCAGTATCATGGCCCCCGAACCCGGCAGGCATTGGAAGAC
CTTTTGGACCGTTTGCACGCTAATGGTGGTGAACTTTCGATCGCGGCCAC
GCCCACTCACCTGACATTGCATGGAGAGATCCAATCGTTTTTGAAGGAGC
ATCCGTTGGCTTTTGTATTGGGAAGGGCGGAGGAGGGAGTAGTGACAGAG
GAGGAGGCTATGTTTACAGCCACGTGTGAAGCCCTGGGCTGGTATCATTG
TGCGATAGTGCATTCCAAGAAAGCTTTGCTCCGGGCAGCGGTTGCGTCGC
TGTGGGAATCGGTGAAAGGTGGTCATAGTGGTGCTGTTATTGCGAAGCTT
GACCAGGGACGTGATGCTCTCCCCTACCAACCCTCTGACGTCACGGCGGC
CTCGCGTGGGCTGGAGGACTGGATGGTACAGCACGGCTTCTCGCTTGTCA
CCCACCTGGACATAGCAGGGCCTCATGTGCAGCAATTTGTGTTCGGACCG
AAGCAGCAGCAGCAAGAGCAGCAGCAGCAAAGGCAGTTGGTGGTGGCGGT
GGTCCGCCCCTTCGAGGATTCAGTGGAGGAGGTGAAGAGTATGCTGGACA
TGCTTCAGGACGCAGCTCGAAGGCATCCAGAGACGAGGTTTGGCTATGTA
ACATCGACAGGAAGCAGGGGATGGCCTGCTTTTGTCGCTGAGCATTTTGT
GAGTGCGGAACAGGAAGGAAGGGTGGAAGAGGTATCCACTTCGTCGGAGT
GTCGCTTGTTCCTTTTGGATTGTGCAACGTATGCTTTGTATGAGGAGCCA
GCAGGGGTGGCGAAGCTTGACGTCTTATTAGATGGCGTTCAAGGAGAAAC
ACTGCGCCCCCGTCTTCTTTCTCTGAAATCTGTCGTCCAGGCAGAAAAGC
GCGTGTTGTCTGAGGAGGAAGTAGAGCAGCAGCAATTAGAGACAACAGCA
GCAGTAGCTGGGGGAACGGCAAGGCCAATAGACGAGGGTACACCAACGAT
GGCCCCAGAGGCGGTGCGTCAGTTGGCGGTGGAGGGGCTCGCTGCTTTAT
GCATCGCGGCGGTGGCTGTTACCTTGCTGCTGATGACGACGGCTGCTGGT
AAGAAGAAAGAAACAGTAGCATCAGCGGCAGCAGTAGGTAAGGAAGAGAT
CATTGTCGAGAAGAAGGAGGTACATATGGAACAGGAGCAGGGGAAGCAGT
ACTCCTTGCCGACGGTTCCGGCTTTTGGGGAGGAGGGAAATGAGAAGCCG
CAACAGACAAGTAGGATGATGTTGATTTCTGAGTCGCTAGACTAA
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protein sequence of NO04G01830.1

>NO04G01830.1-protein ID=NO04G01830.1-protein|Name=NO04G01830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=615bp
MVLSTLILGAVVLVAWPPAPSVPFPNPALKHLQAFFSTWTVTRVNPGRFL
LPNLLMPAGTWRTELTDLNFENETGGSLDMDSNSHSNNSNSNSTTWLVHA
YAPFDADAQRTNALIEKQLGPMLAKRQQDQQHQQSGAPHVVRIGKLDVTQ
NRRAAQELLDMDEDAGVGSILTVLHLNVDGDGSGNEEQYHGPRTRQALED
LLDRLHANGGELSIAATPTHLTLHGEIQSFLKEHPLAFVLGRAEEGVVTE
EEAMFTATCEALGWYHCAIVHSKKALLRAAVASLWESVKGGHSGAVIAKL
DQGRDALPYQPSDVTAASRGLEDWMVQHGFSLVTHLDIAGPHVQQFVFGP
KQQQQEQQQQRQLVVAVVRPFEDSVEEVKSMLDMLQDAARRHPETRFGYV
TSTGSRGWPAFVAEHFVSAEQEGRVEEVSTSSECRLFLLDCATYALYEEP
AGVAKLDVLLDGVQGETLRPRLLSLKSVVQAEKRVLSEEEVEQQQLETTA
AVAGGTARPIDEGTPTMAPEAVRQLAVEGLAALCIAAVAVTLLLMTTAAG
KKKETVASAAAVGKEEIIVEKKEVHMEQEQGKQYSLPTVPAFGEEGNEKP
QQTSRMMLISESLD*
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Synonyms
Publications