NO04G01780, NO04G01780 (gene) Nannochloropsis oceanica

Overview
NameNO04G01780
Unique NameNO04G01780
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1937
Alignment locationchr4:523584..525520 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:523584..525520 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G01780 vs. NCBI_GenBank
Match: EWM28600.1 (hypothetical protein Naga_100009g62 [Nannochloropsis gaditana])

HSP 1 Score: 125.2 bits (313), Expect = 4.900e-25
Identity = 113/343 (32.94%), Postives = 147/343 (42.86%), Query Frame = 0 
Query:    8 AITSGGQPWYVWVLWAAVLLALCRRVWNICNQISMVCDLVNGGDTCPSS-----CWANSLCKKANDKSSAIWRWMELQEDALATGKASPLPACLSLLLRGLVHLSQGLEQVVFQKSGCRIITILAIVLTVYKEEIQAFIRPLGEWLVESLGGEEGGWRGXXXXXXGRELDDSEIPELEDLEVMAQEAATAAAFQRGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHGRSRLEGNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVNIPIVVASKRVPPAGWLVYDKVLGLVTYEE 346
            A  +G QPWYVW +WA  LL L RRVW  C++  MV  + + G TC +       +    C K +D   AIWRW+ELQEDALA G ASP  A L+L ++G++ LS  LE       G  + T+L + + + K+ I+A  RP   + +  LGG+E  W           + ++E+PELED  V+A EA      QR                XXXXXXXXXXX                             SR  G                                                          +P ++ASKRVPPAGWLVYD +LGLVTYEE
Sbjct:    4 AFVAGRQPWYVWAVWAGTLLLLSRRVWQACDRAVMVSGVEDEGSTCSTGSSFERAFPLRFCHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIG--LATLLILTVCMQKDVIRALYRPWVAFFLACLGGKE-DWVA---------VSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKXXXXXXXXXXXDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGV-----------------------LPPLLASKRVPPAGWLVYDPILGLVTYEE 311
[Close]
BLAST of NO04G01780 vs. NCBI_GenBank
Match: EWM28601.1 (hypothetical protein Naga_100009g62 [Nannochloropsis gaditana])

HSP 1 Score: 82.0 bits (201), Expect = 4.800e-12
Identity = 90/283 (31.80%), Postives = 116/283 (40.99%), Query Frame = 0 
Query:   63 CKKANDKSSAIWRWMELQEDALATGKASPLPACLSLLLRGLVHLSQGLEQVVFQKSGCRIITILAIVLTVYKEEIQAFIRPLGEWLVESLGGEEGGWRGXXXXXXGRELDDSEIPELEDLEVMAQEAATAAAFQRGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIRHGRSRLEGNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYVNIPIVVASKRVPPAGWLVYDKVLGLVTYEE 346
            C K +D   AIWRW+ELQEDALA G ASP  A L+L ++G++ LS  LE       G  + T+L + + + K+ I+A  RP   + +  LGG+E  W           + ++E+PELED  V+A EA      QR                XXXXXXXXXXX                             SR  G                                                          +P ++ASKRVPPAGWLVYD +LGLVTYEE
Sbjct:   18 CHKIHDSGYAIWRWIELQEDALALGTASPPRALLALGVQGVLGLSGALEGEGGWWIG--LATLLILTVCMQKDVIRALYRPWVAFFLACLGGKE-DWVA---------VSEAELPELEDTAVIANEAWQRGREQRKPSQREGKEVRHRTIKXXXXXXXXXXXDEVRDVAGERGLGDEAVRRMLTAPCGGSSSRYGGAKRGNTRQCACRTHWDTSKPCASDCAACSEEADGV-----------------------LPPLLASKRVPPAGWLVYDPILGLVTYEE 265
The following BLAST results are available for this feature:
BLAST of NO04G01780 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28600.14.900e-2532.94hypothetical protein Naga_100009g62 [Nannochlorops... [more]
EWM28601.14.800e-1231.80hypothetical protein Naga_100009g62 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01780.1NO04G01780.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
Naga_100009g62gene2007Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01780.1NO04G01780.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01780 ID=NO04G01780|Name=NO04G01780|organism=Nannochloropsis oceanica|type=gene|length=1937bp
CGATGATGGTCTCTCAAGTCACGGAAGCATGACCGGAAAGGACTGCCTGC
TATGCTTAAGGTCAGCCCCTTGTCCCATTTGCGCTTTGTATGTATTTTTA
GGTCGTTCGAGTGTTCGTACATGAGCATCCGTTAGGCAGCAACATCTAGT
ATCACTCTCCACGCGTCGTCACCCCTCCCCTCCCATGAATCACAAGGGGC
CAACCAAGCCCACAATACTCCCGACGCGACAGGGAGGTCGCGCCCACCGC
AGGCGGATGCCACCTGCACTATACACGAGGAACTAGCGGTGAGGCTGTTC
TAATCTAGCTCAAGTAGCAGGACATCTATCTCTGCACCCTGCCTCGGCAC
CGTACCTGGCCCAATCCACAAATGATGATGAAGAAACTCCGCGCCATCAC
ATCGGGAGGGCAGCCCTGGTACGTTTGGGTCCTGTGGGCCGCGGTCCTCC
TCGCCCTTTGCCGTCGGGTCTGGAACATTTGCAACCAAATATCCATGGTG
TGCGACCTCGTGAATGGTGGGGATACTTGCCCATCTAGCTGCTGGGCAAA
TAGgtacgcgcatggcaagtcagaagaagcaggaaggcagacacgcttgt
cctcattcattcgttcattcattcatgccccatacctctgattcacgcac
aactcgagcagTCTTTGTAAGAAGGCCAACGACAAAAGCTCCGCCATATG
GCGTTGGATGGAGCTGCAAGAAGACGCGCTCGCAACAGGCAAGGCCTCCC
CCCTCCCCGCCTGCCTCTCCCTCCTTCTTCGCGGCCTCGTTCATCTCTCC
CAAGGCCTGGAACAGGTGGTATTTCAGAAATCAGGATGCCGGATAATAAC
CATCTTAGCCATTGTTTTGACAGTGTATAAAGAGGAGATCCAAGCTTTCA
TTCGTCCTCTAGGAGAGTGGTTAGTAGAATCGCTAGGCGGGGAGGAAGGA
GGGTGGAGAGGAGGGGGAGGAGGGTGGAGAGGACGAGAGCTGGATGACTC
AGAGATACCGGAGTTGGAAGACTTGGAGGTGATGGCACAGGAAGCAGCAA
CAGCAGCAGCATTCCAGAGAGGGACGGAACAGCAGGTTCAGAAAAAGAAG
GGGCAGCAGAGGAGGAAGAGGAAGAAAAGAAGGCAGCGGTTTCAGACTAT
TGAGGAAGAGGAGGGGGAGGGGGAGAGGGAGGGGGAGGAAGAGGCGGAGG
ATGGTAGAAGAAAAACCACAAGAATACGACATGGGAGGAGTCGGCTGGAG
GGTAATGTGGAGGAAGACGAGGATGCTTGCAACGAGGATGGGCATCAGCA
GCAGCAGCAGTATGCGATCCGAAGCAAGAGGCAGAGTCAGAATAAAAGCT
ACGCAAATGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGGAGTTCTAGGTATGTTAATATCCCTATAGTGGTGGCATCGAA
AAGAGTGCCGCCAGCTGGATGGCTGGTCTATGACAAGGTCCTGGGGTTGG
TCACATACGAGGAACTCCAGGAGTACCAGCAGCGGCAGCAGCAGCAGCAG
CAGCAGGAGCAGGGTCAGGAAATTAAAGGAGGAGGAGGGAAAGGTAAGGA
TAACGGGAATCATGGCGGGATTGTCGCGGATGCGGCGGGAAGACAGCAGC
AGATCAATGGAGGTGGAAACGGTCATTTGCAGGGCCCGGCCTTGAGGAGT
AGTACGAAAAAACAGCGACAAATGAGGCAGAAGCAGCAGCAGAGCTAATG
TGGGGCGGATAATCCTAGTCCTCCGTCACTGTTGGCGTTGTTGTCCATGT
CTGTGTGAGCTCAGGGGGGGGAGAGGTGGCAAAGGAGAGACGTGCATGTT
TTTTTAAAATGTGAATATGTACTTTACAGTCGAAAGGAACGAAATAATAT
CAAGCCCTGTGCTCTTAAGAACCAATAGAGCACGCAG
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protein sequence of NO04G01780.1

>NO04G01780.1-protein ID=NO04G01780.1-protein|Name=NO04G01780.1|organism=Nannochloropsis oceanica|type=polypeptide|length=423bp
MMMKKLRAITSGGQPWYVWVLWAAVLLALCRRVWNICNQISMVCDLVNGG
DTCPSSCWANSLCKKANDKSSAIWRWMELQEDALATGKASPLPACLSLLL
RGLVHLSQGLEQVVFQKSGCRIITILAIVLTVYKEEIQAFIRPLGEWLVE
SLGGEEGGWRGGGGGWRGRELDDSEIPELEDLEVMAQEAATAAAFQRGTE
QQVQKKKGQQRRKRKKRRQRFQTIEEEEGEGEREGEEEAEDGRRKTTRIR
HGRSRLEGNVEEDEDACNEDGHQQQQQYAIRSKRQSQNKSYANDSSSSSS
SSSSSSSSSRSSRYVNIPIVVASKRVPPAGWLVYDKVLGLVTYEELQEYQ
QRQQQQQQQEQGQEIKGGGGKGKDNGNHGGIVADAAGRQQQINGGGNGHL
QGPALRSSTKKQRQMRQKQQQS*
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Synonyms
Publications