NO04G01740, NO04G01740 (gene) Nannochloropsis oceanica

Overview
NameNO04G01740
Unique NameNO04G01740
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1768
Alignment locationchr4:513829..515596 +

Link to JBrowse

Properties
Property NameValue
DescriptionRna recognition motif-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:513829..515596 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO04G01740 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01740.1NO04G01740.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01740.1NO04G01740.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01740 ID=NO04G01740|Name=NO04G01740|organism=Nannochloropsis oceanica|type=gene|length=1768bp
ATGCCACCTACTCCTGGCATGGTGCTGTTGCCGGCCCAGCAGCTTTTTCA
ACAGCAGCAGCAGTTACTGCAGCAGCAGCAACTCTTACTGCAAGGGCAGC
AGGCCCCGTATTCCTTCCTGCCGGGAGGAGGCGGGGAGGGAGGAAGGGAG
GGAGGAAGGGTAGGATATGAGAACGACAGGAAGAGAGGAAGAGATCGCGA
GCGAGGAGAAGGACGAGGAGGAGGGGATGGGTGGGAGGGAGGAGATTGGG
AAGTGGGGCCGAACAAGCGAAGATCGTTTCGAGGGGAGGGCAAATATGGG
CCTGCTGGAGGGATGGGGGCTGGTGGGTACAGTGAGGATGACGGACGAAG
GAATGGAGAAGGAGGGAGGGGGGGAGAAACGCCCTATCGGAGTAGGGGGA
GGAGTCGCTCCCCTCCTTCGCGGGAGCGGAGGGGAGGAAGTTCAAGGGGG
GGGGGCGGATATGTCGGGGGGTCGCGGAGATCGCCAGAGAGGGATTTAAG
TCGGTACGGCCGTGGAGGAGGAGGAGGAGGGGGAGGAGGGGGAGGAGGAG
GGAGGTATAGGCGTGATGACGACTTTCATCCTCCCCGTGGACCCGCCCCT
CCGCAGCTTTTGCCGGCCGTTTATGTCCCGCAGCAACAGCAGCAGCTGCT
GCCGCAATCCACCATGGCGTTTGGTCCTCCCATCGTGTCTTACCCCCACC
ACCACCACCACCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCGCCG
CCGCCTCAACGCCCACCTCCTCCATCGTGGGTGCCTCAAGGACAAACATA
TCCCGCACCCGCCATGGCACCTGCACCTGCTTATCTCCCAGCTCCTCCCC
CTCCTCAGCAGCAGCAGCAGCGAGAACCCGTCTATCAACAGCAGCAAGGC
TACCTGCAGCAGCAGCAGCCGCAGCAAATGCTCCAGCAGCAGCCACCCCC
TCCCTCTCCCTTCCCACATCAGCAGCAGACCGTCCAATCTGCGCAGGTCC
CTCGGCCCATGTCTATGGGGGCCAAAAAGCTCTTACCACCAGGCGCCAAG
CAGCTGCAGCCCCCCCAACAGCCGCAGCAGCTGCAACAGCAGCATCAGCC
GCCTCCTCCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCACAGCCAC
TACCTCCTTATTATGCAGTTTCTGTAGGGCAACCGTACCTCCCACCTCAG
AATGGACACCATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACC
GCAGTACTATTCGCAGCAGCCGCAGCAGGCACCTATGCCGCCACCTGGTT
ACGCCCATCCCCAGCATGCTTACGCTCCTCCTCCCCAGCAGCCGCAGCAG
CACCACCAACAGCAGCATCCCTTGCCCGCGTATGAAGATGGAGCTACTGA
TGGTGGTGGTGGTGCTGGTGGAGGAGATGGGGGAGGAGGAGGAAGAGGGG
GAGGAGGAGGGAATAGAGACCGACCCAGGGGACGCCCTCGCGGTGGCCGT
GGACGTGATAAAAGGGATTCTGAGCGTGGTACTCGAGGAGGAGGAGGACG
GAGCGGAGACCAACCCCCTCCGCAGCGGGGCGAAAAGCCGTATGATTTTC
TGAAGCACCAGCAGTGGCGGGGGGAGTGAGGGAAGAGGGAGGGAGGGAAG
CGAGGAGTAGGAAAGCCGTTAGTAAGGGTGAATTTTAATGTTTGACATCG
CGATTTCGATGCACAGGAAAAAGAAAGACGGGAAGTCTCCTTTTGAGAAA
TAGATAATTTCTCCTGAA
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protein sequence of NO04G01740.1

>NO04G01740.1-protein ID=NO04G01740.1-protein|Name=NO04G01740.1|organism=Nannochloropsis oceanica|type=polypeptide|length=543bp
MPPTPGMVLLPAQQLFQQQQQLLQQQQLLLQGQQAPYSFLPGGGGEGGRE
GGRVGYENDRKRGRDRERGEGRGGGDGWEGGDWEVGPNKRRSFRGEGKYG
PAGGMGAGGYSEDDGRRNGEGGRGGETPYRSRGRSRSPPSRERRGGSSRG
GGGYVGGSRRSPERDLSRYGRGGGGGGGGGGGGGRYRRDDDFHPPRGPAP
PQLLPAVYVPQQQQQLLPQSTMAFGPPIVSYPHHHHHQQQQQQQQQQQPP
PPQRPPPPSWVPQGQTYPAPAMAPAPAYLPAPPPPQQQQQREPVYQQQQG
YLQQQQPQQMLQQQPPPPSPFPHQQQTVQSAQVPRPMSMGAKKLLPPGAK
QLQPPQQPQQLQQQHQPPPPQQQQQQQQQPPQPLPPYYAVSVGQPYLPPQ
NGHHQQQQQQQQQQQQPQYYSQQPQQAPMPPPGYAHPQHAYAPPPQQPQQ
HHQQQHPLPAYEDGATDGGGGAGGGDGGGGGRGGGGGNRDRPRGRPRGGR
GRDKRDSERGTRGGGGRSGDQPPPQRGEKPYDFLKHQQWRGE*
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Synonyms
Publications