NO04G01720, NO04G01720 (gene) Nannochloropsis oceanica

Overview
NameNO04G01720
Unique NameNO04G01720
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1380
Alignment locationchr4:511638..513017 +

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Properties
Property NameValue
DescriptionRna recognition motif-containing protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:511638..513017 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR000504RRM_dom
Homology
BLAST of NO04G01720 vs. NCBI_GenBank
Match: EWM28578.1 (rna recognition motif-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 160.6 bits (405), Expect = 8.700e-36
Identity = 77/113 (68.14%), Postives = 97/113 (85.84%), Query Frame = 0
Query:  139 GGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKE 252
            GG+ QGV E ELR+VF KCGEV+GVRLMKDRRS+Q+KGYAFVR+++ +EA +A EELTG  ++G+ALEV SCE NKRLKVSNLDR+WTPE F++LME AL  + G+VL+EL+E
Sbjct:  134 GGLHQGVREAELRQVFGKCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRALEVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQE 246          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_010542793.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X1 [Tarenaya hassleriana] >XP_010542794.1 PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 95.1 bits (235), Expect = 4.500e-16
Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKEA 253
            G E+F+GG+ + + E +LR + E  GEV  VRLMKDR S + KGYAFV FK+ + A +A EEL G VL GK +  +  E   RL + N+ + WT + F+ ++E      PGV  +EL +A
Sbjct:  107 GSEIFIGGLPKDIGEEDLRDLCEPIGEVFEVRLMKDRDSGESKGYAFVAFKSKDIAQKAIEELHGKVLKGKTIRCSLSETKNRLYIGNIPKSWTEDEFRKVIENV---GPGVEHIELIKA 223          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_010542795.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X2 [Tarenaya hassleriana])

HSP 1 Score: 94.7 bits (234), Expect = 5.900e-16
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G E+F+GG+ + + E +LR + E  GEV  VRLMKDR S + KGYAFV FK+ + A +A EEL G VL GK +  +  E   RL + N+ + WT + F+ ++E      PGV  +EL
Sbjct:  107 GSEIFIGGLPKDIGEEDLRDLCEPIGEVFEVRLMKDRDSGESKGYAFVAFKSKDIAQKAIEELHGKVLKGKTIRCSLSETKNRLYIGNIPKSWTEDEFRKVIENV---GPGVEHIEL 220          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_011098736.1 (uncharacterized protein LOC105177319 [Sesamum indicum] >XP_011098737.1 uncharacterized protein LOC105177319 [Sesamum indicum])

HSP 1 Score: 94.4 bits (233), Expect = 7.700e-16
Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = 0
Query:  132 EGHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKEAEAGGKEEEK 262
            +G EVFVGG+ + ++E ++ KVF  CGE++ VR+M+DR    LKG+ FVRF T E+A +A  E +G VL+GK + V        L   NL++ W+ E F+ ++ +       V L+ LK+A  G K   +
Sbjct:   17 KGTEVFVGGLARSISEEKIHKVFSSCGEIMEVRMMRDRNG-NLKGFCFVRFATKEDANKAVREKSGIVLDGKKIGVLPASEQDTLYFGNLNKAWSAEEFERIVLQVFPDIESVDLVMLKDAPPGQKHRNR 145          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: OMP08675.1 (hypothetical protein COLO4_06212 [Corchorus olitorius])

HSP 1 Score: 94.0 bits (232), Expect = 1.000e-15
Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G EVF+GG+ + V E +LR++ E  GE+  +RLMKDR S + KGYAFV FK+ E A +A EEL      GK +  +  E+  RL + N+ + WT + FKN++E      PGV  +EL
Sbjct:  103 GSEVFIGGLPKDVAEDDLRELCEPIGEIFEIRLMKDRESGESKGYAFVSFKSKEVAQQAIEELHSKEFRGKTIRCSLSESKNRLFIGNVPKTWTEDEFKNVIEGV---GPGVENVEL 216          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_022938168.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938176.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938184.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938192.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938201.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G EVF+GG+ + V+E +LR + E  GE+  +R++KDR S + KGYAF+ FKT E A +A EEL G  + GK +  +  ++  RL + N+ + WT + FK L+E      PGV  +EL
Sbjct:  105 GSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGV---GPGVENIEL 218          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_022938159.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G EVF+GG+ + V+E +LR + E  GE+  +R++KDR S + KGYAF+ FKT E A +A EEL G  + GK +  +  ++  RL + N+ + WT + FK L+E      PGV  +EL
Sbjct:  107 GSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGV---GPGVENIEL 220          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_023540270.1 (heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540271.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540272.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540273.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540274.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G EVF+GG+ + V+E +LR + E  GE+  +R++KDR S + KGYAF+ FKT E A +A EEL G  + GK +  +  ++  RL + N+ + WT + FK L+E      PGV  +EL
Sbjct:  105 GSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGV---GPGVENIEL 218          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_015947915.1 (heterogeneous nuclear ribonucleoprotein R [Arachis duranensis] >XP_015947917.1 heterogeneous nuclear ribonucleoprotein R [Arachis duranensis])

HSP 1 Score: 93.2 bits (230), Expect = 1.700e-15
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G EVF+GG+ + V E +LR++ E  GE+  VRLMKDR S + KGYAFV FKT E A  A EE+      GK L  +  E  +RL + N+ + WT E F+ ++E      PGV ++EL
Sbjct:  133 GSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGV---GPGVEVIEL 246          
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_016182202.1 (heterogeneous nuclear ribonucleoprotein R [Arachis ipaensis] >XP_016182208.1 heterogeneous nuclear ribonucleoprotein R [Arachis ipaensis] >XP_020970936.1 heterogeneous nuclear ribonucleoprotein R [Arachis ipaensis])

HSP 1 Score: 93.2 bits (230), Expect = 1.700e-15
Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 0
Query:  133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250
            G EVF+GG+ + V E +LR++ E  GE+  VRLMKDR S + KGYAFV FKT E A  A EE+      GK L  +  E  +RL + N+ + WT E F+ ++E      PGV ++EL
Sbjct:  134 GSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGV---GPGVEVIEL 247          
The following BLAST results are available for this feature:
BLAST of NO04G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28578.18.700e-3668.14rna recognition motif-containing protein [Nannochl... [more]
XP_010542793.14.500e-1643.33PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
XP_010542795.15.900e-1643.59PREDICTED: heterogeneous nuclear ribonucleoprotein... [more]
XP_011098736.17.700e-1638.46uncharacterized protein LOC105177319 [Sesamum indi... [more]
OMP08675.11.000e-1543.59hypothetical protein COLO4_06212 [Corchorus olitor... [more]
XP_022938168.11.300e-1541.88heterogeneous nuclear ribonucleoprotein Q-like iso... [more]
XP_022938159.11.300e-1541.88heterogeneous nuclear ribonucleoprotein Q-like iso... [more]
XP_023540270.11.300e-1541.88heterogeneous nuclear ribonucleoprotein Q-like [Cu... [more]
XP_015947915.11.700e-1544.44heterogeneous nuclear ribonucleoprotein R [Arachis... [more]
XP_016182202.11.700e-1544.44heterogeneous nuclear ribonucleoprotein R [Arachis... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009637NSK009637Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01720.1NO04G01720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524745gene_1960Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g56gene2011Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01720.1NO04G01720.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01720 ID=NO04G01720|Name=NO04G01720|organism=Nannochloropsis oceanica|type=gene|length=1380bp
ATCGCATTCGCTTCATCACCATCATGCCCGTGGGGGTGGATTGTACGACA
TGCCTGCTGTTGTTCCCGCGTGTTGAAACCACACACAGATATGCACAGCG
CACAAAGATGGACAGGATGCATAAATGCTTGTCCAAGTGATCCATCGCTT
ACATTGCTTCACTATCCCCGAAAACCGTAGTTTTGTGTTGTACAGCGAGA
AGCAATTTGAACGTCCTCAAGCAACAGCACGACACACACGCACAGCACGC
CCTAAGTGGCAGCAGCAGCAGCAACGGTAACAAAAGCATCAGGTTTACTT
TCAGAGCTGACAGAGGAACTCGTAGCAGCAGCAAGCATGGAGGAAGGTGC
GGTCGTGGAGGAGCCACCCAAGCCGGCGGCTGTCCAGGAGGAGGGAGAAG
AGGAGGAGGGGAAGCAAGCGGTTGCTGCTGGCAACGAGGAGGGCGAGGGA
GAGGAAGGGGTTGTCCCTGACGCCACCGCACCGGCTGAAGGTGTGAAGGA
AGCGAATGTAGACGGTACAAATGGCGGCGGCGATGTTGCAGGGATCTCCG
CCATGGAAGAGGAAGGAGAAGTGCTGGAGGACGACGGAAGAGAAGAAGGA
GAGGAGATTGAGACGCAGCAGGCAGCAGCAGCAACGCCCACAACAGCCAC
ACTAATTCCATCCCCGAGATCAGCATTAATGGCCCCATCTTCATCCTCCT
CAGCTTCCGTACAGCAGGAACAAGTGGAGGAGGGGCACGAAGTCTTTGTT
GGGGGGGTGAAGCAAGGTGTAACGGAAGGAGAGCTCCGCAAGGTTTTTGA
AAAATGCGGGGAGGTGATAGGGGTGCGCTTGATGAAAGACCGTCGTTCTA
GGCAATTGAAAGGCTATGCCTTTGTGCGTTTCAAGACGAGTGAGGAGGCG
GGAAGAGCGCAGGAGGAATTGACCGGATATGTGTTGAACGGGAAGGCCTT
GGAGGTGAACTCGTGCGAGGCAAATAAGAGGCTCAAGGTGAGCAATCTGG
ACAGGAAGTGGACGCCAGAAATATTTAAGAATTTGATGGAAAAGGCCTTG
CTGCCGTTTCCGGGGGTGGTGTTGCTGGAGCTGAAGGAAGCAGAGGCGGG
AGGGAAGGAGGAAGAGAAGTGGAAGGGAAAGAAGGGTGGGAGGGTTGGCA
AATATGAGGACGAATGGAAAGAGAATGTGAAAGAGAAGGAGAGGGGAAGA
GGGCAGAAAAATGCTATGAAAGTGGAGGAGGAGGAGCAGGAGGAGGGAGA
GGTGGAGGAGGGGGAGGTGGGGGAGGAGGAGGGCGTCGTCGTTAAGGGAG
AAGGGGAGGGGGGGAGGACGGGAGGGAGGAGACAGCGCCCGAACATGTCG
CCACCGAGATTGAGCAGCAGCTTATTGTAG
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protein sequence of NO04G01720.1

>NO04G01720.1-protein ID=NO04G01720.1-protein|Name=NO04G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MEEGAVVEEPPKPAAVQEEGEEEEGKQAVAAGNEEGEGEEGVVPDATAPA
EGVKEANVDGTNGGGDVAGISAMEEEGEVLEDDGREEGEEIETQQAAAAT
PTTATLIPSPRSALMAPSSSSSASVQQEQVEEGHEVFVGGVKQGVTEGEL
RKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVL
NGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELK
EAEAGGKEEEKWKGKKGGRVGKYEDEWKENVKEKERGRGQKNAMKVEEEE
QEEGEVEEGEVGEEEGVVVKGEGEGGRTGGRRQRPNMSPPRLSSSLL*
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Synonyms
Publications