NO04G01720, NO04G01720 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01720 vs. NCBI_GenBank
Match: EWM28578.1 (rna recognition motif-containing protein [Nannochloropsis gaditana]) HSP 1 Score: 160.6 bits (405), Expect = 8.700e-36 Identity = 77/113 (68.14%), Postives = 97/113 (85.84%), Query Frame = 0 Query: 139 GGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKE 252 GG+ QGV E ELR+VF KCGEV+GVRLMKDRRS+Q+KGYAFVR+++ +EA +A EELTG ++G+ALEV SCE NKRLKVSNLDR+WTPE F++LME AL + G+VL+EL+E Sbjct: 134 GGLHQGVREAELRQVFGKCGEVLGVRLMKDRRSKQMKGYAFVRYRSPQEARKAAEELTGCEVHGRALEVRSCEENKRLKVSNLDRRWTPEKFRDLMESALAAYSGIVLVELQE 246
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_010542793.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X1 [Tarenaya hassleriana] >XP_010542794.1 PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X1 [Tarenaya hassleriana]) HSP 1 Score: 95.1 bits (235), Expect = 4.500e-16 Identity = 52/120 (43.33%), Postives = 74/120 (61.67%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKEA 253 G E+F+GG+ + + E +LR + E GEV VRLMKDR S + KGYAFV FK+ + A +A EEL G VL GK + + E RL + N+ + WT + F+ ++E PGV +EL +A Sbjct: 107 GSEIFIGGLPKDIGEEDLRDLCEPIGEVFEVRLMKDRDSGESKGYAFVAFKSKDIAQKAIEELHGKVLKGKTIRCSLSETKNRLYIGNIPKSWTEDEFRKVIENV---GPGVEHIELIKA 223
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_010542795.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein R-like isoform X2 [Tarenaya hassleriana]) HSP 1 Score: 94.7 bits (234), Expect = 5.900e-16 Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G E+F+GG+ + + E +LR + E GEV VRLMKDR S + KGYAFV FK+ + A +A EEL G VL GK + + E RL + N+ + WT + F+ ++E PGV +EL Sbjct: 107 GSEIFIGGLPKDIGEEDLRDLCEPIGEVFEVRLMKDRDSGESKGYAFVAFKSKDIAQKAIEELHGKVLKGKTIRCSLSETKNRLYIGNIPKSWTEDEFRKVIENV---GPGVEHIEL 220
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_011098736.1 (uncharacterized protein LOC105177319 [Sesamum indicum] >XP_011098737.1 uncharacterized protein LOC105177319 [Sesamum indicum]) HSP 1 Score: 94.4 bits (233), Expect = 7.700e-16 Identity = 50/130 (38.46%), Postives = 77/130 (59.23%), Query Frame = 0 Query: 132 EGHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLELKEAEAGGKEEEK 262 +G EVFVGG+ + ++E ++ KVF CGE++ VR+M+DR LKG+ FVRF T E+A +A E +G VL+GK + V L NL++ W+ E F+ ++ + V L+ LK+A G K + Sbjct: 17 KGTEVFVGGLARSISEEKIHKVFSSCGEIMEVRMMRDRNG-NLKGFCFVRFATKEDANKAVREKSGIVLDGKKIGVLPASEQDTLYFGNLNKAWSAEEFERIVLQVFPDIESVDLVMLKDAPPGQKHRNR 145
BLAST of NO04G01720 vs. NCBI_GenBank
Match: OMP08675.1 (hypothetical protein COLO4_06212 [Corchorus olitorius]) HSP 1 Score: 94.0 bits (232), Expect = 1.000e-15 Identity = 51/117 (43.59%), Postives = 72/117 (61.54%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G EVF+GG+ + V E +LR++ E GE+ +RLMKDR S + KGYAFV FK+ E A +A EEL GK + + E+ RL + N+ + WT + FKN++E PGV +EL Sbjct: 103 GSEVFIGGLPKDVAEDDLRELCEPIGEIFEIRLMKDRESGESKGYAFVSFKSKEVAQQAIEELHSKEFRGKTIRCSLSESKNRLFIGNVPKTWTEDEFKNVIEGV---GPGVENVEL 216
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_022938168.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938176.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938184.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938192.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata] >XP_022938201.1 heterogeneous nuclear ribonucleoprotein Q-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15 Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G EVF+GG+ + V+E +LR + E GE+ +R++KDR S + KGYAF+ FKT E A +A EEL G + GK + + ++ RL + N+ + WT + FK L+E PGV +EL Sbjct: 105 GSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGV---GPGVENIEL 218
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_022938159.1 (heterogeneous nuclear ribonucleoprotein Q-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15 Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G EVF+GG+ + V+E +LR + E GE+ +R++KDR S + KGYAF+ FKT E A +A EEL G + GK + + ++ RL + N+ + WT + FK L+E PGV +EL Sbjct: 107 GSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGV---GPGVENIEL 220
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_023540270.1 (heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540271.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540272.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540273.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo] >XP_023540274.1 heterogeneous nuclear ribonucleoprotein Q-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 93.6 bits (231), Expect = 1.300e-15 Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G EVF+GG+ + V+E +LR + E GE+ +R++KDR S + KGYAF+ FKT E A +A EEL G + GK + + ++ RL + N+ + WT + FK L+E PGV +EL Sbjct: 105 GSEVFIGGLSRDVSEEDLRDLCESLGEIFEIRIIKDRDSGESKGYAFISFKTKEAAQKAIEELHGKEVKGKTIRCSLSDSKHRLFIGNVPKSWTEDEFKRLIEGV---GPGVENIEL 218
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_015947915.1 (heterogeneous nuclear ribonucleoprotein R [Arachis duranensis] >XP_015947917.1 heterogeneous nuclear ribonucleoprotein R [Arachis duranensis]) HSP 1 Score: 93.2 bits (230), Expect = 1.700e-15 Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G EVF+GG+ + V E +LR++ E GE+ VRLMKDR S + KGYAFV FKT E A A EE+ GK L + E +RL + N+ + WT E F+ ++E PGV ++EL Sbjct: 133 GSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGV---GPGVEVIEL 246
BLAST of NO04G01720 vs. NCBI_GenBank
Match: XP_016182202.1 (heterogeneous nuclear ribonucleoprotein R [Arachis ipaensis] >XP_016182208.1 heterogeneous nuclear ribonucleoprotein R [Arachis ipaensis] >XP_020970936.1 heterogeneous nuclear ribonucleoprotein R [Arachis ipaensis]) HSP 1 Score: 93.2 bits (230), Expect = 1.700e-15 Identity = 52/117 (44.44%), Postives = 71/117 (60.68%), Query Frame = 0 Query: 133 GHEVFVGGVKQGVTEGELRKVFEKCGEVIGVRLMKDRRSRQLKGYAFVRFKTSEEAGRAQEELTGYVLNGKALEVNSCEANKRLKVSNLDRKWTPEIFKNLMEKALLPFPGVVLLEL 250 G EVF+GG+ + V E +LR++ E GE+ VRLMKDR S + KGYAFV FKT E A A EE+ GK L + E +RL + N+ + WT E F+ ++E PGV ++EL Sbjct: 134 GSEVFIGGLPRDVCEDDLRELCESLGEIFEVRLMKDRDSGEGKGYAFVAFKTKEVAQNAIEEIHNKKYKGKTLRCSLSETKQRLFIGNVPKTWTEEEFRRVVEGV---GPGVEVIEL 247 The following BLAST results are available for this feature:
BLAST of NO04G01720 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01720 ID=NO04G01720|Name=NO04G01720|organism=Nannochloropsis oceanica|type=gene|length=1380bpback to top protein sequence of NO04G01720.1 >NO04G01720.1-protein ID=NO04G01720.1-protein|Name=NO04G01720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bpback to top Synonyms
Publications
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