NO04G01620, NO04G01620 (gene) Nannochloropsis oceanica

Overview
NameNO04G01620
Unique NameNO04G01620
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2337
Alignment locationchr4:489261..491597 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:489261..491597 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0005488binding
Vocabulary: INTERPRO
TermDefinition
IPR018957Znf_C3HC4_RING-type
IPR001841Znf_RING
Homology
[Close]
BLAST of NO04G01620 vs. NCBI_GenBank
Match: EWM28622.1 (hypothetical protein Naga_100009g48 [Nannochloropsis gaditana])

HSP 1 Score: 137.5 bits (345), Expect = 1.500e-28
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 0 
Query:  144 EALRAEVAHLRNKLKEALGDVPVCSICLEIVSYPVELQDCRHLYCCECFYMHATSNTAGNRACPVCRCKINKAPLPPPLAFIQHLEWVK 233
            +ALRAEV  LR KL  ALGD+P CSICLE V YPVELQ+CRHL+CC+CFYM+A   T GN ACP CR  + KAPLPPPLAFIQHL+ +K
Sbjct:   72 KALRAEVELLRKKLDAALGDIPACSICLECVDYPVELQECRHLFCCQCFYMYAKWKTTGNIACPACRTTVCKAPLPPPLAFIQHLDAIK 160
The following BLAST results are available for this feature:
BLAST of NO04G01620 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28622.11.500e-2869.66hypothetical protein Naga_100009g48 [Nannochlorops... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009649NSK009649Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01620.1NO04G01620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563612gene_1948Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g48gene2019Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01620.1NO04G01620.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01620 ID=NO04G01620|Name=NO04G01620|organism=Nannochloropsis oceanica|type=gene|length=2337bp
GATGGCAACTCGCCATCGGGCGGACCTCCTCCCCCCCCTTCCTTTCTTAA
GCACATAATGCAAATAATGCCGGAGGACGACGAAAATGCGCAGCCCTGTA
TCTTCTCCTCCCTCCTGTCACTCTTCTTTCAAATTTTCCTTCCACCATCC
ACCTCGCAACTTATCCAGCCGCAGCACGAGCACACACTTAAAATCATCCG
GGCAAGCCTGAGGGCCGCCAACCCAGCGCCAAACTACGGCAAGGACCAGG
ATGCTGCAGGTCCCTCTTTTCCTCACTTCCATCTATACATATGTTTTTCG
CATTTTTAATCTTCTTCCCTACTTACGCTACGTCCACAGCGAGCTACAGC
GAATGCAATAATGGCCCGCCATGACGAATACCACAACGGGGCCGCCAGCA
GCAGCAGCAGCGGTAGCAGCATCAGCAGCAGCCACAGCAGTAGCAACAAG
AGGGCGCGGAATGGAACGAGTGAACCACAGCAGGATGATCGTACAACTCG
GGCCGCTGCGGCAGCCATTGCCTGTCGTGCTGCTGCTGCTGCTCCTGCTT
CAGCTCGTGGTCCTGCTGCTGCTGCTGCTGCCGCTGCTGCTGCTGCTGCT
GCTGTTGCTGCTGCTGCTGTTGCTGCTCCAGCGGCTGCTGCAGGGAGGCA
AGGGGAGGCGAGCAGGGACGCAATTCACTACCATGACATAGCTGGGGACG
CAGGAAAAGACAAGGACGACATACATCGTTCCTGCAGAAAAGAAAAGCAG
GCTCTGCGTTCTGAAATCAGGGTGCTACATGAGCAACACGAAGCCCTCCG
TGCCGAAGTCGCACATCTCCGGAACAAGCTGAAAGAAGCCTTGGGTGATG
TGCCTGTCTGCTCCATCTGCTTGGAGATTGTAAGCTACCCGGTGGAGCTC
CAAGACTGTCGGCATCTGTACTGCTGCGAGTGCTTCTACATGCACGCTAC
CTCCAACACGGCCGGGAATAGGGCCTGTCCCGTGTGTAGGTGTAAGATAA
ATAAAGCGCCGTTGCCCCCGCCTTTGGCATTTATCCAGCACTTGGAGTGG
GTCAAGAAGGAAAAGAGGCGACATGATGAGGAGATGGCAGCAGCAACAGC
AGCAGCAGCTGCTTCAGCGCCCGCACTATTTGCGACGATAGAAAAGAGGG
CAGGTAGTTGTGGTGGTGTTGATGACGATAATGATGATGATGCTGCATCA
GCATCAGCAGGGGCGGTAAGACAAGCAGCAGGTGACGACAAAGATGTGAC
CGATGCTGCTGCTGCTGCTATTGCAGCTGCTGCTACTACAGCTGCTCGTG
TTGCGCGGACCACGTATCAGCTGCAGATGGAGGAGTTGAAGCGGTTGTTT
GACAGGGAAGATAGGCGACGACGGCGGCCTGGAGAAAGGGAGGGAGGAGG
GGCATATGATGATTCGGATGGGGTGTATCGGTGCCCGCGTTGTCATTGGG
AGATGTTGGAGGGACGTTGTGCCCGGGGTTGTGGGGATGGTGAGGACGAG
GGGGAGGAGGAGGAGGATATGTTAGTGGTGGCTGATAGTAGCGAATACGA
ACACGAAGGATTGGCGAGCATGCGGCCGTATCATGATGAGTATTCGAGGA
TGGAGAGAAGGATAGTCGAAACTACACGTCGGATGGAGCAGGGGTCATTT
CAGCCCGACGTCCCTTCTAGTGGTGGTGGTAGCAGTAGGCAGCGTCGACG
ACGAAGGGAAGGAAGGGAAGAAGTGTCAGGGGAACAGGAGGGCGAAGAGG
CAGAGAATGAACTAGGCATTGGCTTCGCTCGCCGGCGACTGCAATGGTTG
CGGCGGCTACAACGTCGGCAAAGAACGGAGGTGGAGGAGGAGGAGGTGGG
AGAAGAAGAGGAAGACGAGGAGGAGAGCGAGGAAGAAGAAGAGAGTGGTT
TAGAGGAGGACGATGGGCGGCCTTCATGGATGGTGGGGCGGCCGCAAATG
TCAAGGCGGTGTCAGCGACAAGAGGAGTATCTTCTCGAAGAGGAGGATAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAGGCCGACGCCAGATTCGGGGCTTGTTTAGGGCTGGG
CGTAATGTGGGGAGAGAAGCTGCTTTGCGGCAACGCGCGCGAGATGAAGA
GGAAGAGGAAGAAGAAGAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGGAGAGGAAGAGGAG
GGCAGGGAGGGAGGGAGTTCTGAAGGAGAGGACGGAGAGGACTATAAATA
TGTCGTGAGTGGTAACGAGAGCGAGGTAATTGCATAG
back to top

protein sequence of NO04G01620.1

>NO04G01620.1-protein ID=NO04G01620.1-protein|Name=NO04G01620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=659bp
MARHDEYHNGAASSSSSGSSISSSHSSSNKRARNGTSEPQQDDRTTRAAA
AAIACRAAAAAPASARGPAAAAAAAAAAAAAVAAAAVAAPAAAAGRQGEA
SRDAIHYHDIAGDAGKDKDDIHRSCRKEKQALRSEIRVLHEQHEALRAEV
AHLRNKLKEALGDVPVCSICLEIVSYPVELQDCRHLYCCECFYMHATSNT
AGNRACPVCRCKINKAPLPPPLAFIQHLEWVKKEKRRHDEEMAAATAAAA
ASAPALFATIEKRAGSCGGVDDDNDDDAASASAGAVRQAAGDDKDVTDAA
AAAIAAAATTAARVARTTYQLQMEELKRLFDREDRRRRRPGEREGGGAYD
DSDGVYRCPRCHWEMLEGRCARGCGDGEDEGEEEEDMLVVADSSEYEHEG
LASMRPYHDEYSRMERRIVETTRRMEQGSFQPDVPSSGGGSSRQRRRRRE
GREEVSGEQEGEEAENELGIGFARRRLQWLRRLQRRQRTEVEEEEVGEEE
EDEEESEEEEESGLEEDDGRPSWMVGRPQMSRRCQRQEEYLLEEEDKEEE
EEEEEEEEEEEEEEEEEEGRRQIRGLFRAGRNVGREAALRQRARDEEEEE
EEEEEGEEEEEEEEEEEEEEEEEEEGEEEEGREGGSSEGEDGEDYKYVVS
GNESEVIA*
back to top
Synonyms
Publications