NO04G01580, NO04G01580 (gene) Nannochloropsis oceanica

Overview
NameNO04G01580
Unique NameNO04G01580
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2407
Alignment locationchr4:478218..480624 -

Link to JBrowse

Properties
Property NameValue
DescriptionZinc finger ccch domain-containing protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:478218..480624 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR035979RBD_domain_sf
IPR036855Znf_CCCH_sf
IPR032297Torus
IPR000571Znf_CCCH
IPR000504RRM_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Homology
BLAST of NO04G01580 vs. NCBI_GenBank
Match: EWM28565.1 (zinc finger ccch domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 603.6 bits (1555), Expect = 5.100e-169
Identity = 293/323 (90.71%), Postives = 309/323 (95.67%), Query Frame = 0
Query:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTWATRPAG 324
            MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKE AGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRD+VLAEAAA+GEGGAA  A+TVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSR+DPLANQNIKDRFYGQDDPVAQKMLGR A+K+ ED APLIPP+DP I TLMVGGMEGG++TE E+R+AFY FGE+A VR++ AK +AFVEYTTREAAEAAAKALHNNLTLQGLRLRV+WA RPAG
Sbjct:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRPAG 323          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_005854877.1 (pre-mRNA-splicing factor RBM22/SLT11 [Nannochloropsis gaditana CCMP526] >EKU21485.1 pre-mRNA-splicing factor RBM22/SLT11 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 600.5 bits (1547), Expect = 4.300e-168
Identity = 292/323 (90.40%), Postives = 308/323 (95.36%), Query Frame = 0
Query:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTWATRPAG 324
            MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKE AGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRD+VLAEAAA+GEGGAA  A+TVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSR+DPLANQNIKDRFYGQDDPVAQKMLGR A+K+ ED APLIPP+DP I TLMVGGMEGG++TE E+R+AFY FGE+A VR++ AK +AFVEYTTREAAEAAAKALHNNLTLQGLRLRV+WA R AG
Sbjct:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEPAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDSVLAEAAAAGEGGAASYAMTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRSDPLANQNIKDRFYGQDDPVAQKMLGRAASKEKEDQAPLIPPTDPEIKTLMVGGMEGGAVTETEMREAFYGFGEVAGVRMVPAKHLAFVEYTTREAAEAAAKALHNNLTLQGLRLRVSWALRQAG 323          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: CBJ32288.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 377.5 bits (968), Expect = 5.900e-101
Identity = 184/320 (57.50%), Postives = 229/320 (71.56%), Query Frame = 0
Query:    1 MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTWATR 321
            MGERG Q+K   NK+ WE SDFP+VCETCLGDNPYVRMTKE  GKACKIC+RP+T+FRW+ G   R K T++CQTCAK+KN     VLDL YGLPV+VRD  LAE             L VP SD N+++    H++ +AEG  + Y    +N+KL+R++R+ PYYKRN PHKC+FYAKGEC RG +CPFLHEMPT R DPLA+QNI+DRFYGQDDPVA KM+ R      +DL  L PP D  I +L +G M    IT  +LRDAFY+FGEL S+R++  K  AFV++TTR+AAEAAA+ L+  L ++G  LR+ WATR
Sbjct:    1 MGERGYQLKGANNKKAWEESDFPIVCETCLGDNPYVRMTKEPHGKACKICERPYTVFRWKAGTTGRIKSTQLCQTCAKLKNACQTCVLDLQYGLPVEVRDKFLAEED----------RLEVPGSDANREFMTQVHEKQLAEG-GNPYSNKPLNQKLLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMAR-----QDDLPKLEPPEDEGISSLWLGNM-ADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATR 303          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_010262753.1 (PREDICTED: zinc finger CCCH domain-containing protein 40-like [Nelumbo nucifera])

HSP 1 Score: 337.4 bits (864), Expect = 6.800e-89
Identity = 165/309 (53.40%), Postives = 212/309 (68.61%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            D   +GWE SDFP++CE+CLGDNPYVRMTK    K CKIC RPFT+FRWRPG  ARFKKTEVCQTC+K+KN     +LDL YGLPVQVRD  LA  +             +P+SD N+++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A ++  L+PP D SI TL VGG++ G ITE +LRD FYA GE+ S+R++  +  AFV YTTRE AE AA+ L N L ++G+RL++ W
Sbjct:    8 DPEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSND----------AIPKSDVNREYFAEEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPIT--GELSQQNIKDRYYGVNDPVALKLLNK-----AGEMPSLVPPEDESIKTLYVGGLD-GRITEQDLRDHFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGVRLKLMW 298          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_010276793.1 (PREDICTED: zinc finger CCCH domain-containing protein 49-like [Nelumbo nucifera])

HSP 1 Score: 337.4 bits (864), Expect = 6.800e-89
Identity = 165/309 (53.40%), Postives = 212/309 (68.61%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            D   +GWE SDFP++CE+CLGDNPYVRMTK    K CKIC RPFT+FRWRPG  ARFKKTEVCQTC+K+KN     +LDL YGLPVQVRD  LA  +             +P+SD N+++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A ++  L+PP D SI TL VGG++ G ITE +LRD FYA GE+ S+R++  +  AFV YTTRE AE AA+ L N L ++G+RL++ W
Sbjct:    8 DPEADGWERSDFPIICESCLGDNPYVRMTKADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINSND----------AIPKSDVNREYFAEEHDRRARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPIT--GELSQQNIKDRYYGVNDPVALKLLNK-----AGEMPSLVPPEDESIKTLYVGGLD-GRITEQDLRDHFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGVRLKLMW 298          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_010693770.1 (PREDICTED: zinc finger CCCH domain-containing protein 49 [Beta vulgaris subsp. vulgaris] >KMS98847.1 hypothetical protein BVRB_3g068270 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 337.4 bits (864), Expect = 6.800e-89
Identity = 164/309 (53.07%), Postives = 212/309 (68.61%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            DL  +GWE SDFP++CE+CLGDNPYVRMTK    K CKIC RPFT+FRWRPG  AR+KKTE+CQTC+K+KN     +LDL YGLPVQVRD  L+ +              +P+SD N+++FA +HDR    G  +  SYGK + N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A ++  L PP D SI TL VGG++   ITE +LRD FYA GE+ S+R++  +  AFV YTTREAAE AA+ L N L ++GLRL++ W
Sbjct:    8 DLEADGWERSDFPIICESCLGDNPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISTND----------AIPKSDVNREYFAEEHDRKARAGLDYESSYGKVRPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVT--GELSQQNIKDRYYGLNDPVAMKLLNK-----AGEMQTLEPPEDESIKTLYVGGLD-ARITEQDLRDNFYAHGEIESIRMVLQRACAFVTYTTREAAEKAAEELSNKLVIKGLRLKLMW 298          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_011032177.1 (PREDICTED: zinc finger CCCH domain-containing protein 49-like [Populus euphratica] >XP_011032178.1 PREDICTED: zinc finger CCCH domain-containing protein 49-like [Populus euphratica] >XP_011032179.1 PREDICTED: zinc finger CCCH domain-containing protein 49-like [Populus euphratica])

HSP 1 Score: 337.4 bits (864), Expect = 6.800e-89
Identity = 165/309 (53.40%), Postives = 212/309 (68.61%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            D   +GWE SDFP++CE+CLGDNPYVRMT+    K CKIC RPFT+FRWRPG  ARFKKTEVCQTC+K+KN     +LDL YGLPVQVRD  L+  +             +P+SD N+++FA +HDR    G  +  SYGKAQ N+ +++L R  PYYKRN  H C+F+A+GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A D+  L PP D SI TL VGG++   I E +LRD FYA GE+ S++++  + IAFV YTTRE AE AA+ L N L ++GLRL++ W
Sbjct:    8 DPEADGWERSDFPIICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND----------AIPKSDVNREYFAEEHDRRARAGIDYESSYGKAQANDTILKLQRTTPYYKRNRAHVCSFFARGECTRGAECPYRHEMPIT--GELSQQNIKDRYYGVNDPVAMKLLNK-----AGDMPSLEPPEDESIKTLYVGGLD-ARINEQDLRDQFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 298          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_006847071.1 (zinc finger CCCH domain-containing protein 40 isoform X1 [Amborella trichopoda] >ERN08652.1 hypothetical protein AMTR_s00017p00207950 [Amborella trichopoda])

HSP 1 Score: 337.0 bits (863), Expect = 8.900e-89
Identity = 165/309 (53.40%), Postives = 212/309 (68.61%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            D   +GWE SDFP++CE+CLGDNPYVRMTK    K CKIC RPFT+FRWRPG  AR+KKTEVCQTC+K+KN     +LDL YGLPVQVRD  LA    +           +P+SD NK++FA +HDR    G  +  SYGKA+ N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A D+  L PP D SI TL VGG++   +TE +L+D FYA+GE+ S+R++  +  AFV YTTRE AE AA+ L N L ++GLRL++ W
Sbjct:    8 DSEVDGWERSDFPIICESCLGDNPYVRMTKANFDKECKICSRPFTVFRWRPGRDARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAITNDA-----------IPKSDVNKEYFAEEHDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPIT--GELSQQNIKDRYYGVNDPVALKLLNK-----AGDMPSLTPPEDESIKTLYVGGLD-TRVTEQDLKDHFYAYGEIESIRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 297          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_002314127.1 (zinc finger CCCH domain-containing protein 49 [Populus trichocarpa] >XP_024464646.1 zinc finger CCCH domain-containing protein 49 [Populus trichocarpa] >PNT19485.1 hypothetical protein POPTR_009G041600v3 [Populus trichocarpa])

HSP 1 Score: 336.7 bits (862), Expect = 1.200e-88
Identity = 165/309 (53.40%), Postives = 211/309 (68.28%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            D   +GWE SDFP++CE+CLGDNPYVRMT+    K CKIC RPFT+FRWRPG  ARFKKTEVCQTC+K+KN     +LDL YGLPVQVRD  L+  +             +P+SD N+++FA +HDR    G  +  SYGKAQ N+ +++L R  PYYKRN  H C+F+A+GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A D+  L PP D SI TL VGG++   I E +LRD FYA GE+ S++++  + IAFV YTTRE AE AA  L N L ++GLRL++ W
Sbjct:    8 DPEADGWERSDFPIICESCLGDNPYVRMTRADFDKECKICTRPFTVFRWRPGRDARFKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND----------AIPKSDVNREYFAEEHDRRARAGIDYESSYGKAQANDTILKLQRTTPYYKRNRAHVCSFFARGECTRGAECPYRHEMPIT--GELSQQNIKDRYYGVNDPVAMKLLNK-----AGDMPSLEPPEDESIKTLYVGGLD-ARINEQDLRDQFYAHGEIESIKMVPQRAIAFVTYTTREGAEKAAAELSNRLVIKGLRLKLMW 298          
BLAST of NO04G01580 vs. NCBI_GenBank
Match: XP_021615581.1 (zinc finger CCCH domain-containing protein 40-like [Manihot esculenta] >OAY61121.1 hypothetical protein MANES_01G165200 [Manihot esculenta])

HSP 1 Score: 336.7 bits (862), Expect = 1.200e-88
Identity = 163/309 (52.75%), Postives = 213/309 (68.93%), Query Frame = 0
Query:   11 DLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKICDRPFTIFRWRPGAKARFKKTEVCQTCAKMKNXXXXXVLDLTYGLPVQVRDAVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEG--HADSYGKAQINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRNDPLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMVGGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAKALHNNLTLQGLRLRVTW 318
            DL  +GWE SDFP++CE+CLGDNPYVRMT+    K CKIC RPFT+FRWRPG  ARFKK+E+CQTC+K+KN     +LDL YGLPVQVRD  L+  +             +P+SD N+++FA +HDR    G  +  SYGKA+ N+ +++L R  PYYKRN  H C+FY +GECTRG  CP+ HEMP +    L+ QNIKDR+YG +DPVA K+L +     A ++  L PP D SI TL VGG++   ITE +LRD FYA GE+ S++++  + IAFV YTTRE AE AA+ L N L ++GLRL++ W
Sbjct:    8 DLEADGWERSDFPIICESCLGDNPYVRMTRAEFDKECKICTRPFTVFRWRPGRDARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSINSND----------AIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYRHEMPIT--GELSQQNIKDRYYGMNDPVALKLLNK-----AGEMPSLEPPEDESIRTLYVGGLD-ARITEQDLRDNFYAHGEIESIKMVSQRAIAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMW 298          
The following BLAST results are available for this feature:
BLAST of NO04G01580 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
EWM28565.15.100e-16990.71zinc finger ccch domain-containing protein [Nannoc... [more]
XP_005854877.14.300e-16890.40pre-mRNA-splicing factor RBM22/SLT11 [Nannochlorop... [more]
CBJ32288.15.900e-10157.50conserved unknown protein [Ectocarpus siliculosus][more]
XP_010262753.16.800e-8953.40PREDICTED: zinc finger CCCH domain-containing prot... [more]
XP_010276793.16.800e-8953.40PREDICTED: zinc finger CCCH domain-containing prot... [more]
XP_010693770.16.800e-8953.07PREDICTED: zinc finger CCCH domain-containing prot... [more]
XP_011032177.16.800e-8953.40PREDICTED: zinc finger CCCH domain-containing prot... [more]
XP_006847071.18.900e-8953.40zinc finger CCCH domain-containing protein 40 isof... [more]
XP_002314127.11.200e-8853.40zinc finger CCCH domain-containing protein 49 [Pop... [more]
XP_021615581.11.200e-8852.75zinc finger CCCH domain-containing protein 40-like... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009654NSK009654Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01580.2NO04G01580.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide
NO04G01580.1NO04G01580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578487gene_1944Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g42gene2023Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01580.2NO04G01580.2Nannochloropsis oceanica (N. oceanica IMET1)mRNA
NO04G01580.1NO04G01580.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01580 ID=NO04G01580|Name=NO04G01580|organism=Nannochloropsis oceanica|type=gene|length=2407bp
ACAGTCCGTGCAACCATGGGGGAACGGGGCATGCAGATTAAGGCGGACCT
AAACAAGGAAGGTTGGGAATCGAGCGACTTCCCCTTGGTCTGTGAGACGT
GTCTGGGGGACAACCCTTACGTGCGTATGACCAAGGAAGCAGCCGGCAAG
GCGTGCAAGATTTGTGACCGGCCCTTCACTATCTTTAGGTGGCGTCCCGG
CGCCAAGGCCCGCTTTAAGAAGACCGAGGTGTGTCAGACGTGCGCAAAGA
TGAAGAACGTGTGCCAAACCTGCGTCCTGGATCTGACCTATGGCCTACCC
GTGCAAGTCCGCGACGCCGTCTTGGCGGAAGCTGCGGCGTCGGGGGAGGG
TGGCGCGGCGCCGTTGGCTTTGACCGTTCCACAGAGCGATACCAATAAGC
AATGGTTTGCGGGACAGCATGATAGAATGGTGGCGGAGGGCCACGCGGAT
TCGTATGGCAAGGCGCAGATCAATGAGAAGCTGATGCGGTTGTCTCGGGC
TCAGCCTTACTACAAGCGGAATCTGCCACATAAGTGCACGTTTTATGCCA
AGGGGGAGTGTACGCGTGGGGACCGATGTCCGTTTTTgtaagtggatgta
ttgggaggtaaaagggggagagtgcgatattgtgcgtgatgggccggagc
ctggtggagagggatggaggattatttgtcggtttgtgcctacccctcgc
gctcgtgtatatcccctttcttttgtgcttctcaacatacctgcacctta
gacatgcaagttggccatgattataaatttttatcatttggcgcggggcc
ggggacttctttcggcttgagtcacagccttgtcgccgaggctggcgatt
cgctgggtgaccttctccttcgtgtgcccggcgctccgcatggggacttt
tggtcctcgctggggaatgttatgcgaccatactctctgagccttttaga
gcatactctcgtttcctcttcatgtattcttcgtttcctggtgtggctcc
tcatgaaattctcacctcccttccccttccttccctccccctccttcctt
cccttttccccaaatagGCACGAAATGCCCACCTCTCGAAATGACCCCCT
TGCCAACCAAAATATCAAAGACCGTTTCTACGGGCAAGATGATCCAGTGG
CTCAAAAGATGCTTGGCCGCGTGGCGGCAAAGGATGCGGAAGACCTCGCT
CCTCTGATCCCTCCCTCCGACCCCAGCATTATGACGCTCATGGTGGGAGG
GATGGAGGGTGGGTCCATCACGGAGATGGAATTGCGGGATGCGTTCTATG
CGTTTGGGGAGCTGGCGAGTGTGAGGTTGATCCATGCTAAATTTATCGCG
TTCGTGGAGTATACGACAAGGGAAGCAGCAGAAGCAGCAGCCAAGGCCCT
CCACAACAACCTCACTTTGCAGGGACTCCGCCTTCGAGTCACCTGGGCGA
CGCGGCCCGCGGGTGGAGCGCTTGCCAACTCTAGCACCAGCAGCGGCAGT
TTTGCCATGTATGGTGGTGGTGGGGGTGGGGGTAGCGTTTCTGCTGCTGC
TGCTGCTGGTGGTGGTGCCGGTGGTGGTGATGGTAGCATGCCTTCTCCTC
CGAGCACCTTCCCCCCTCTCCCCCCTCCTCAATATATGCCTGCCCTACCC
CCTTCCAACTGGACACCAGGCACCATTCCTCCGCCCCCTCCCGGCGGTCC
TCCTCCCATGCGCCATCCCCCTCAACAGTACATGCAGCAGGGAGGGGCCC
TCTCCCTTCCTCCTCCTCAGCAGgtagatttgaagtacagataggagaga
tcacataggagagatcacataggagagaggaggggaatatttccatgagg
atatgatgatttacaaccagctactctgaatcgagctcttagtcggctta
acaacaccgtgtagtcaattcaagatatttctaactactagatgggctga
tcctcacacagacacgcactttcccacactcgactccctttcctctccac
accagctagactgaatctttcactcactcactcattattcacctactcac
tcactccatcccacagCCCTACTACCCTTCCATGGACCCTCAGCGCATGG
GAGCTCGGCCACCCCCCCCTCCCCCCACACCAGGCGCCCCCTCGCGACGA
TAATTAAGATCAAGGCAAGAACCAAAATATAACTCCGATGCCTGTTTTTG
GCGATAGAAACAGCAGGGGAAAAGATGCAGTGTGTGTACATAGAATCGAA
AATAAATAAAATCATGGCAAGTTTCAGGGTTGGCACACTTGCATGTGAGT
AGATAGCCTTTGAGTTGGATGTGCCGAAGACTAGGAAGGGAAAGCAGCTC
GTACAGCGTCGGGGATGAAACCGAAAATGAAAGTATACAGATAAATACTG
AAAATTT
back to top

protein sequence of NO04G01580.2

>NO04G01580.2-protein ID=NO04G01580.2-protein|Name=NO04G01580.2|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKIC
DRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRD
AVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKA
QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRND
PLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMV
GGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAK
ALHNNLTLQGLRLRVTWATRPAGGALANSSTSSGSFAMYGGGGGGGSVSA
AAAAGGGAGGGDGSMPSPPSTFPPLPPPQYMPALPPSNWTPGTIPPPPPG
GPPPMRHPPQQYMQQGGALSLPPPQQVDLKYR*
back to top

protein sequence of NO04G01580.1

>NO04G01580.1-protein ID=NO04G01580.1-protein|Name=NO04G01580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=455bp
MGERGMQIKADLNKEGWESSDFPLVCETCLGDNPYVRMTKEAAGKACKIC
DRPFTIFRWRPGAKARFKKTEVCQTCAKMKNVCQTCVLDLTYGLPVQVRD
AVLAEAAASGEGGAAPLALTVPQSDTNKQWFAGQHDRMVAEGHADSYGKA
QINEKLMRLSRAQPYYKRNLPHKCTFYAKGECTRGDRCPFLHEMPTSRND
PLANQNIKDRFYGQDDPVAQKMLGRVAAKDAEDLAPLIPPSDPSIMTLMV
GGMEGGSITEMELRDAFYAFGELASVRLIHAKFIAFVEYTTREAAEAAAK
ALHNNLTLQGLRLRVTWATRPAGGALANSSTSSGSFAMYGGGGGGGSVSA
AAAAGGGAGGGDGSMPSPPSTFPPLPPPQYMPALPPSNWTPGTIPPPPPG
GPPPMRHPPQQYMQQGGALSLPPPQQPYYPSMDPQRMGARPPPPPPTPGA
PSRR*
back to top
Synonyms
Publications