NO04G01570, NO04G01570 (gene) Nannochloropsis oceanica

Overview
NameNO04G01570
Unique NameNO04G01570
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1275
Alignment locationchr4:476743..478017 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:476743..478017 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
BLAST of NO04G01570 vs. NCBI_GenBank
Match: XP_005854873.1 (hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526] >EKU21481.1 hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 433.0 bits (1112), Expect = 1.100e-117
Identity = 228/426 (53.52%), Postives = 285/426 (66.90%), Query Frame = 0
Query:    1 MTRHILMCLAGSLLHATITSQA--TPLPAAGGVPVETLAQLGQLIEATLASPTPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPXXXXXXXXXXXXXXSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVXXXXXXXXXDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPFPSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADKAAEAMKSNLSTPLGSXXXXPIDSI 425
            M +  L    G L  AT ++ A  +   A G VP +TLA LGQL  A++A  +   ED    +       SQ+ C++++TL LG L TECA LARDLQ++  T+++CKRVYDFSKPKLD +CSNKCY  MV ALD MAKAGC+ DG+ K MCDQC E T CV+GVCRP CS+  P              SDQ G+Q+T+MGTFGYKISLE +CLK P   P        D   P  S  A+  Q+          DYCF+S+F ALE LTPDVCDK+ ATGCCAGTV+QYG+ C LAND++ +N  APMQLT L  FCP+VDF+ +C+N P YA G CK+GY DGPG ELPFPSLASFAR SFD+ G+YAL GGI+FMC+LLL V+++ +RG++R QAEA  AA+A K+N+S+P  S    PID I
Sbjct:    1 MAQKTLFYATGILFWATSSTAALNSMASAGGAVPAQTLALLGQLTLASVAL-SATTED----VHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALP--------DTDAPDASTAAKEQQMA-----LAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKRGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408          
BLAST of NO04G01570 vs. NCBI_GenBank
Match: EWM28532.1 (hypothetical protein Naga_100009g41 [Nannochloropsis gaditana])

HSP 1 Score: 432.2 bits (1110), Expect = 1.900e-117
Identity = 229/426 (53.76%), Postives = 287/426 (67.37%), Query Frame = 0
Query:    1 MTRHILMCLAGSLLHATITSQA-TPLPAAGG-VPVETLAQLGQLIEATLASPTPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPXXXXXXXXXXXXXXSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVXXXXXXXXXDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPFPSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADKAAEAMKSNLSTPLGSXXXXPIDSI 425
            M +  L    G L  AT ++ A   + AAGG VP +TLA LGQL  A++A  +   ED    +       SQ+ C++++TL LG L TECA LARDLQ++  T+++CKRVYDFSKPKLD +CSNKCY  MV ALD MAKAGC+ DG+ K MCDQC E T CV+GVCRP CS+  P              SDQ G+Q+T+MGTFGYKISLE +CLK P   P        D   P  S  A+  Q+          DYCF+S+F ALE LTPDVCDK+ ATGCCAGTV+QYG+ C LAND++ +N  APMQLT L  FCP+VDF+ +C+N P YA G CK+GY DGPG ELPFPSLASFAR SFD+ G+YAL GGI+FMC+LLL V+++ ++G++R QAEA  AA+A K+N+S+P  S    PID I
Sbjct:    1 MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVAL-SATTED----VHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALP--------DTDAPDASTAAKEQQMA-----LAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408          
BLAST of NO04G01570 vs. NCBI_GenBank
Match: EWM25017.1 (hypothetical protein Naga_100068g6 [Nannochloropsis gaditana])

HSP 1 Score: 138.3 bits (347), Expect = 5.600e-29
Identity = 80/269 (29.74%), Postives = 120/269 (44.61%), Query Frame = 0
Query:   69 SQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPXXXXXXXXXXXXXXSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVXXXXXXXXXDYCFTSMFGALEKLTPDV-CDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQC 337
            + E C  +L  +L   L EC  +A+ + +L      CK  YDFS+  +  +C+N+C+ V+   L  M+ AGC+   ++K  C++C     CV   CR  CS + P                   V   +MG  GYKI+LE +C   P  K                                   +YCF  +FG L  L     C K++  GCC GTV  +  +CA +ND++S + +  + LT+L +FCP +DF+  CAN P    G C
Sbjct:  169 TDEECGAFLAASLAPHLWECFDMAQTVLNLV-KQENCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSA-SILKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNGYKIALEYLCTTSPTNK-----------------------------------NYCFADIFGVLNALDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTS-AGSISLTDLQQFCPEIDFKTPCANAPPLEPGAC 399          
The following BLAST results are available for this feature:
BLAST of NO04G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
XP_005854873.11.100e-11753.52hypothetical protein NGA_0377400 [Nannochloropsis ... [more]
EWM28532.11.900e-11753.76hypothetical protein Naga_100009g41 [Nannochlorops... [more]
EWM25017.15.600e-2929.74hypothetical protein Naga_100068g6 [Nannochloropsi... [more]
back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009655NSK009655Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01570.1NO04G01570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578483gene_1943Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g41gene2024Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01570.1NO04G01570.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01570 ID=NO04G01570|Name=NO04G01570|organism=Nannochloropsis oceanica|type=gene|length=1275bp
ATGACACGACACATACTTATGTGCCTGGCCGGCAGCCTGCTCCATGCTAC
CATCACGTCCCAGGCCACCCCCCTCCCCGCCGCGGGAGGCGTTCCTGTGG
AGACCTTGGCCCAGCTGGGACAATTGATAGAAGCCACCTTGGCATCTCCG
ACCCCTGCTGGAGAAGATTCCAGAGGAGTCCTTCGCACTCTTGCAGTATC
TGAATCCCAGGAATACTGCGATACGTACCTGACGCTGGCCTTGGGAGGTT
TGTTGACCGAGTGCGCGACTTTGGCAAGGGACTTACAGTCACTGACCGGC
ACTACATCCGAGTGCAAGCGTGTGTACGATTTTTCCAAGCCTAAGTTGGA
CAGCTTATGCTCCAACAAGTGCTATTCAGTCATGGTAGATGCTTTGGACA
ATATGGCCAAGGCGGGATGTGCACCCGATGGGCTCATCAAGACCATGTGC
GACCAATGCCCTGAGGATACAGTCTGCGTCAAGGGTGTCTGCCGTCCCAA
ATGCTCCTCCAATCATCCATGCGCCTGCGACGATGAGTGTGTGGATGGCA
GTTGTAGGCCTTCGGATCAGGTCGGCGTACAGCAGACGGAGATGGGGACC
TTCGGGTACAAGATTTCGCTGGAGGTCATGTGTCTCAAACCCCCTCCTGT
GAAGCCTATTGCTGCCAAAGCTGGCACGAGTGATAATGCTGTCCCGGCAG
TCTCGAAGGATGCCCAGGCATTGCAATTGGTTGACAATGCAGCGCCGGCG
GTGGAGCAAGATTATTGTTTTACGAGCATGTTTGGGGCTTTGGAGAAGTT
GACCCCCGACGTGTGCGACAAGATCGAGGCCACAGGATGCTGCGCGGGCA
CAGTGCTGCAATACGGACTGAAATGTGCTTTGGCCAACGACTCCATAAGT
GTGAATGACAGTGCACCTATGCAGTTGACAAATTTAATCAAGTTTTGCCC
GAACGTCGATTTTCAGGCTGAATGTGCGAATACTCCCGTGTATGCCGCGG
GTCAATGCAAATTGGGGTACACAGATGGACCAGGCGTGGAGCTACCTTTC
CCCAGCCTAGCCAGTTTTGCCCGTTCAAGCTTTGATTTGGTGGGGGTGTA
TGCATTGGGCGGGGGGATTGCTTTCATGTGCATGCTTTTGCTGGTGGTGA
CCGTGGTAACGAGGCGCGGGAATCTTCGCAAGCAGGCCGAGGCGGACAAG
GCCGCTGAGGCGATGAAGTCAAATCTGTCGACGCCCCTGGGGTCGCCCGT
GGCCTCACCCATCGACAGTATTTAA
back to top

protein sequence of NO04G01570.1

>NO04G01570.1-protein ID=NO04G01570.1-protein|Name=NO04G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MTRHILMCLAGSLLHATITSQATPLPAAGGVPVETLAQLGQLIEATLASP
TPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTG
TTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMC
DQCPEDTVCVKGVCRPKCSSNHPCACDDECVDGSCRPSDQVGVQQTEMGT
FGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVDNAAPA
VEQDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSIS
VNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPF
PSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADK
AAEAMKSNLSTPLGSPVASPIDSI*
back to top
Synonyms
Publications