NO04G01570, NO04G01570 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01570 vs. NCBI_GenBank
Match: XP_005854873.1 (hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526] >EKU21481.1 hypothetical protein NGA_0377400 [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 433.0 bits (1112), Expect = 1.100e-117 Identity = 228/426 (53.52%), Postives = 285/426 (66.90%), Query Frame = 0 Query: 1 MTRHILMCLAGSLLHATITSQA--TPLPAAGGVPVETLAQLGQLIEATLASPTPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPXXXXXXXXXXXXXXSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVXXXXXXXXXDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPFPSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADKAAEAMKSNLSTPLGSXXXXPIDSI 425 M + L G L AT ++ A + A G VP +TLA LGQL A++A + ED + SQ+ C++++TL LG L TECA LARDLQ++ T+++CKRVYDFSKPKLD +CSNKCY MV ALD MAKAGC+ DG+ K MCDQC E T CV+GVCRP CS+ P SDQ G+Q+T+MGTFGYKISLE +CLK P P D P S A+ Q+ DYCF+S+F ALE LTPDVCDK+ ATGCCAGTV+QYG+ C LAND++ +N APMQLT L FCP+VDF+ +C+N P YA G CK+GY DGPG ELPFPSLASFAR SFD+ G+YAL GGI+FMC+LLL V+++ +RG++R QAEA AA+A K+N+S+P S PID I Sbjct: 1 MAQKTLFYATGILFWATSSTAALNSMASAGGAVPAQTLALLGQLTLASVAL-SATTED----VHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALP--------DTDAPDASTAAKEQQMA-----LAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKRGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
BLAST of NO04G01570 vs. NCBI_GenBank
Match: EWM28532.1 (hypothetical protein Naga_100009g41 [Nannochloropsis gaditana]) HSP 1 Score: 432.2 bits (1110), Expect = 1.900e-117 Identity = 229/426 (53.76%), Postives = 287/426 (67.37%), Query Frame = 0 Query: 1 MTRHILMCLAGSLLHATITSQA-TPLPAAGG-VPVETLAQLGQLIEATLASPTPAGEDSRGVLRTLAVSESQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPXXXXXXXXXXXXXXSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVXXXXXXXXXDYCFTSMFGALEKLTPDVCDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQCKLGYTDGPGVELPFPSLASFARSSFDLVGVYALGGGIAFMCMLLLVVTVVTRRGNLRKQAEADKAAEAMKSNLSTPLGSXXXXPIDSI 425 M + L G L AT ++ A + AAGG VP +TLA LGQL A++A + ED + SQ+ C++++TL LG L TECA LARDLQ++ T+++CKRVYDFSKPKLD +CSNKCY MV ALD MAKAGC+ DG+ K MCDQC E T CV+GVCRP CS+ P SDQ G+Q+T+MGTFGYKISLE +CLK P P D P S A+ Q+ DYCF+S+F ALE LTPDVCDK+ ATGCCAGTV+QYG+ C LAND++ +N APMQLT L FCP+VDF+ +C+N P YA G CK+GY DGPG ELPFPSLASFAR SFD+ G+YAL GGI+FMC+LLL V+++ ++G++R QAEA AA+A K+N+S+P S PID I Sbjct: 1 MAQKTLFYATGILFWATSSTAALNSMAAAGGAVPAQTLALLGQLTLASVAL-SATTED----VHAQMAPASQDDCNSFMTLLLGPLTTECAELARDLQTVATTSTDCKRVYDFSKPKLDGMCSNKCYPTMVRALDGMAKAGCSADGVTKMMCDQCEEGTACVEGVCRPLCSATKPCACNDECVNGSCQSSDQGGLQRTDMGTFGYKISLEHLCLKAPLALP--------DTDAPDASTAAKEQQMA-----LAKEDYCFSSVFNALEGLTPDVCDKLAATGCCAGTVMQYGVTCGLANDTVKLNGGAPMQLTALANFCPDVDFKTKCSNAPAYADGMCKVGYVDGPGTELPFPSLASFARGSFDMAGLYALAGGISFMCLLLLTVSILQKQGHVRGQAEAADAADAGKTNVSSPAVSPVASPIDKI 408
BLAST of NO04G01570 vs. NCBI_GenBank
Match: EWM25017.1 (hypothetical protein Naga_100068g6 [Nannochloropsis gaditana]) HSP 1 Score: 138.3 bits (347), Expect = 5.600e-29 Identity = 80/269 (29.74%), Postives = 120/269 (44.61%), Query Frame = 0 Query: 69 SQEYCDTYLTLALGGLLTECATLARDLQSLTGTTSECKRVYDFSKPKLDSLCSNKCYSVMVDALDNMAKAGCAPDGLIKTMCDQCPEDTVCVKGVCRPKCSSNHPXXXXXXXXXXXXXXSDQVGVQQTEMGTFGYKISLEVMCLKPPPVKPIAAKAGTSDNAVPAVSKDAQALQLVXXXXXXXXXDYCFTSMFGALEKLTPDV-CDKIEATGCCAGTVLQYGLKCALANDSISVNDSAPMQLTNLIKFCPNVDFQAECANTPVYAAGQC 337 + E C +L +L L EC +A+ + +L CK YDFS+ + +C+N+C+ V+ L M+ AGC+ ++K C++C CV CR CS + P V +MG GYKI+LE +C P K +YCF +FG L L C K++ GCC GTV + +CA +ND++S + + + LT+L +FCP +DF+ CAN P G C Sbjct: 169 TDEECGAFLAASLAPHLWECFDMAQTVLNLV-KQENCKTSYDFSQANMHRICTNQCHDVLHKTLSTMSSAGCSA-SILKQSCNECASGEKCVGTKCRTVCSPSLPCPCSYACESGACIPPKNSEVTVNDMGVNGYKIALEYLCTTSPTNK-----------------------------------NYCFADIFGVLNALDASTFCSKMKPIGCCTGTVFNFVTECATSNDTLSTS-AGSISLTDLQQFCPEIDFKTPCANAPPLEPGAC 399 The following BLAST results are available for this feature:
BLAST of NO04G01570 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 3
Relationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01570 ID=NO04G01570|Name=NO04G01570|organism=Nannochloropsis oceanica|type=gene|length=1275bpback to top protein sequence of NO04G01570.1 >NO04G01570.1-protein ID=NO04G01570.1-protein|Name=NO04G01570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bpback to top Synonyms
Publications
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