NO04G01550, NO04G01550 (gene) Nannochloropsis oceanica

Overview
NameNO04G01550
Unique NameNO04G01550
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1140
Alignment locationchr4:473524..474663 +

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Properties
Property NameValue
DescriptionPeptidylprolyl isomerase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:473524..474663 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR023566PPIase_FKBP
IPR001179PPIase_FKBP_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Homology
BLAST of NO04G01550 vs. NCBI_GenBank
Match: XP_005854871.1 (hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526] >EKU21479.1 hypothetical protein NGA_0377200 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 337.0 bits (863), Expect = 5.200e-89
Identity = 177/232 (76.29%), Postives = 191/232 (82.33%), Query Frame = 0
Query:   36 AMTVDSFVVLPISQRTGS--LARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQLVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIRSRPRKT 266
            A  V  F V P   R  S  + R C +   +   G +VDR     +A+K AG+VA   G+A  GLP LV AKKIINLEEARELGEKKMI+IEKAKGPLIKVRDNVKYREEL+GKG  F+ GDLVKIRYQVYKGNGDYMFSTGYGREFQ+DVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGW+TSGGFPEPQTFGGKRKLLNH NEFLQFEVEVIR RP+KT
Sbjct:   33 ASNVLCFRVKPCIARDTSRDVRRACRRPTPSRGGGEDVDR----MDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: EWM28541.1 (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 337.0 bits (863), Expect = 5.200e-89
Identity = 177/232 (76.29%), Postives = 191/232 (82.33%), Query Frame = 0
Query:   36 AMTVDSFVVLPISQRTGS--LARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQLVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIRSRPRKT 266
            A  V  F V P   R  S  + R C +   +   G +VDR     +A+K AG+VA   G+A  GLP LV AKKIINLEEARELGEKKMI+IEKAKGPLIKVRDNVKYREEL+GKG  F+ GDLVKIRYQVYKGNGDYMFSTGYGREFQ+DVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGW+TSGGFPEPQTFGGKRKLLNH NEFLQFEVEVIR RP+KT
Sbjct:   33 ASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDR----MDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWQTSGGFPEPQTFGGKRKLLNHMNEFLQFEVEVIRVRPKKT 260          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: EWM28542.1 (peptidyl-prolyl cis-trans fkbp-type [Nannochloropsis gaditana])

HSP 1 Score: 177.2 bits (448), Expect = 6.900e-41
Identity = 101/152 (66.45%), Postives = 113/152 (74.34%), Query Frame = 0
Query:   36 AMTVDSFVVLPISQRTGS--LARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQLVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVG 186
            A  V  F V P   R  S  + R C +   +   G +VDR     +A+K AG+VA   G+A  GLP LV AKKIINLEEARELGEKKMI+IEKAKGPLIKVRDNVKYREEL+GKG  F+ GDLVKIRYQVYKGNGDYMFSTGYGREFQ+DVG
Sbjct:   33 ASNVLCFRVKPCIARDTSRNVRRACRRPTPSRGGGEDVDR----MDALKTAGMVATAGGLAIGGLPNLVEAKKIINLEEARELGEKKMIDIEKAKGPLIKVRDNVKYREELIGKGDIFKAGDLVKIRYQVYKGNGDYMFSTGYGREFQNDVG 180          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: CEL91697.1 (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 164.9 bits (416), Expect = 3.500e-37
Identity = 93/184 (50.54%), Postives = 119/184 (64.67%), Query Frame = 0
Query:   80 AVKKAGLVAGGWGVAAAGLPQLVGAKK-IINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVG--KGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPN-SIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIR 260
            + +++ L +    + A+ LP    AK   +++EEARE+GE+K    E AKGPL++    V+YRE + G    P  EKGD  K++YQVYKGNGDY+FS GYGREF+ D  DTY   +G P+  IP   E  M GMRVG  RKI VPPELG+ TS   PEP TF GKRKL  H NE L FEVE+++
Sbjct:   55 STRRSHLSSAAVALTASLLPLAAVAKSPPLSIEEAREIGERKREAEEAAKGPLLRSSKGVRYREPVKGPSDAPLCEKGDTCKVKYQVYKGNGDYVFSLGYGREFKQDRLDTYAIKYGDPDKKIPLAVEDAMSGMRVGSLRKILVPPELGFNTSNQRPEPDTFSGKRKLAVHINEPLLFEVELVK 238          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: GAQ82985.1 (FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Klebsormidium nitens])

HSP 1 Score: 149.1 bits (375), Expect = 2.000e-32
Identity = 77/173 (44.51%), Postives = 112/173 (64.74%), Query Frame = 0
Query:   92 GVAAAGLPQLVGAKKI-INLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIRSRPR 264
            G AA G P    AK+   N+++ARE GE++  E E+A+GP++K+   VKYRE  VG G     GDLV + Y +Y+ +G Y+ S GYG+E +DDVGD + F  G    +P+G E G+ GM +GG+R+I VPP+LGW   G  P P +   +R+LL H NE L FE+E+++++ R
Sbjct:    9 GRAALGAPP---AKQFRTNIDDAREEGERRREEKERAEGPIVKLPSGVKYRELAVGTGEALRPGDLVSVYYTIYRLSGLYIDSVGYGKEGKDDVGDAFTFELG-AGQVPQGVEQGVLGMCIGGRRRILVPPKLGWINDGVLPRPTSGAAERRLLRHTNEPLLFEIEIVKTKHR 177          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: XP_024532488.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 142.5 bits (358), Expect = 1.900e-30
Identity = 76/174 (43.68%), Postives = 110/174 (63.22%), Query Frame = 0
Query:   90 GWGVAAA---GLPQLVGAKKI-INLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIR 260
            G G+AAA    LP    A+K+  NLEEARE GE +  E E+A+GP+I +   +++RE   G G T   GD+V ++Y +Y+ NG Y+ S GYG E +DDVGD   F  G   ++P+  E+GMEGM++GGKR+I V P+LGW      P+P T    R+L+N   + L FE+E+++
Sbjct:   33 GHGIAAASALSLPSSPSARKLYTNLEEAREAGEARREEKERAQGPIITLPSGIRFRELDAGSGRTVAPGDVVSVQYVIYRLNGMYLDSLGYGNEGKDDVGDVLTFQLG-GRTVPRAVELGMEGMKLGGKRRILVNPDLGWTQESMQPQPTTAAAGRRLMNSFQKPLLFEIELVK 205          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: XP_024533155.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like isoform X1 [Selaginella moellendorffii])

HSP 1 Score: 141.4 bits (355), Expect = 4.200e-30
Identity = 76/174 (43.68%), Postives = 110/174 (63.22%), Query Frame = 0
Query:   90 GWGVAAA---GLPQLVGAKKI-INLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIR 260
            G G+AAA    LP    A+K+  NLEEARE GE +  E E+A+GP+I +   V++RE   G G T   GD+V ++Y +Y+ NG Y+ S GYG E +DDVG+   F  G   ++P+  E+GMEGM++GGKR+I V P+LGW      P+P T    R+L+N   + L FE+E+++
Sbjct:   40 GHGIAAASALSLPSSPSARKLYTNLEEAREAGEARREEKERAQGPIITLPSGVRFRELDAGSGRTVAPGDVVSVQYVIYRLNGMYLDSLGYGNEGKDDVGEVLTFQLG-GKTVPRAVELGMEGMKLGGKRRILVNPDLGWTQESMQPQPTTAAAGRRLMNSFQKPLLFEIELVK 212          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: XP_024533157.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like isoform X3 [Selaginella moellendorffii])

HSP 1 Score: 141.4 bits (355), Expect = 4.200e-30
Identity = 76/174 (43.68%), Postives = 110/174 (63.22%), Query Frame = 0
Query:   90 GWGVAAA---GLPQLVGAKKI-INLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIR 260
            G G+AAA    LP    A+K+  NLEEARE GE +  E E+A+GP+I +   V++RE   G G T   GD+V ++Y +Y+ NG Y+ S GYG E +DDVG+   F  G   ++P+  E+GMEGM++GGKR+I V P+LGW      P+P T    R+L+N   + L FE+E+++
Sbjct:   33 GHGIAAASALSLPSSPSARKLYTNLEEAREAGEARREEKERAQGPIITLPSGVRFRELDAGSGRTVAPGDVVSVQYVIYRLNGMYLDSLGYGNEGKDDVGEVLTFQLG-GKTVPRAVELGMEGMKLGGKRRILVNPDLGWTQESMQPQPTTAAAGRRLMNSFQKPLLFEIELVK 205          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: XP_024533156.1 (peptidyl-prolyl cis-trans isomerase FKBP16-1, chloroplastic-like isoform X2 [Selaginella moellendorffii])

HSP 1 Score: 134.4 bits (337), Expect = 5.100e-28
Identity = 76/174 (43.68%), Postives = 108/174 (62.07%), Query Frame = 0
Query:   90 GWGVAAA---GLPQLVGAKKI-INLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIR 260
            G G+AAA    LP    A+K+  NLEEARE GE +  E E+A+GP+I +   V  RE   G G T   GD+V ++Y +Y+ NG Y+ S GYG E +DDVG+   F  G   ++P+  E+GMEGM++GGKR+I V P+LGW      P+P T    R+L+N   + L FE+E+++
Sbjct:   40 GHGIAAASALSLPSSPSARKLYTNLEEAREAGEARREEKERAQGPIITLPSGV--RELDAGSGRTVAPGDVVSVQYVIYRLNGMYLDSLGYGNEGKDDVGEVLTFQLG-GKTVPRAVELGMEGMKLGGKRRILVNPDLGWTQESMQPQPTTAAAGRRLMNSFQKPLLFEIELVK 210          
BLAST of NO04G01550 vs. NCBI_GenBank
Match: XP_001700064.1 (peptidyl-prolyl cis-trans isomerase, FKBP-type [Chlamydomonas reinhardtii])

HSP 1 Score: 121.3 bits (303), Expect = 4.500e-24
Identity = 63/149 (42.28%), Postives = 85/149 (57.05%), Query Frame = 0
Query:  129 GPLIKVRDNVKYREELVGKGPTFEKGDLVKIRYQVYK------------GNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPKGAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEFLQFEVEVIRSRPRKT 266
            G L+ +   ++YRE L G GP    G + ++ Y VY+            G   ++FS GYG+E +DDVG TY F  G PNS+P      + GMR GGKR+I VPP LGW +    P P TFGG R+L  H++E L FE E++R R + T
Sbjct:  164 GTLVTLPSGLQYRELLEGSGPEAALGSVCEVSYVVYRLASGAYYKYSSGGTPVFLFSLGYGKEGKDDVGQTYRFRLGDPNSLPAAVTPALVGMRQGGKRRILVPPRLGWVSDKVGPRPDTFGGGRRLEGHKDEPLLFEAELVRVRTQGT 312          
The following BLAST results are available for this feature:
BLAST of NO04G01550 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_005854871.15.200e-8976.29hypothetical protein NGA_0377200 [Nannochloropsis ... [more]
EWM28541.15.200e-8976.29peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
EWM28542.16.900e-4166.45peptidyl-prolyl cis-trans fkbp-type [Nannochlorops... [more]
CEL91697.13.500e-3750.54unnamed protein product [Vitrella brassicaformis C... [more]
GAQ82985.12.000e-3244.51FKBP-type peptidyl-prolyl cis-trans isomerase fami... [more]
XP_024532488.11.900e-3043.68peptidyl-prolyl cis-trans isomerase FKBP16-1, chlo... [more]
XP_024533155.14.200e-3043.68peptidyl-prolyl cis-trans isomerase FKBP16-1, chlo... [more]
XP_024533157.14.200e-3043.68peptidyl-prolyl cis-trans isomerase FKBP16-1, chlo... [more]
XP_024533156.15.100e-2843.68peptidyl-prolyl cis-trans isomerase FKBP16-1, chlo... [more]
XP_001700064.14.500e-2442.28peptidyl-prolyl cis-trans isomerase, FKBP-type [Ch... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009657NSK009657Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01550.1NO04G01550.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578476gene_1941Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g39gene2026Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01550.1NO04G01550.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01550 ID=NO04G01550|Name=NO04G01550|organism=Nannochloropsis oceanica|type=gene|length=1140bp
ATGAAGCTATCATCATGCGCTGGCATCAGCAACCGCGAGTCAAGGCGAGT
CTCCTCGGCACTGCTTTTGGCGCCTCTACTGGTTCTACATAACCTGCTTG
CGTTGGCAATGACCGTGGATAGTTTTGTTGTCCTACCAATAAGCCAGAGA
ACGGGATCGCTAGCTCGCGTTTGTGGACAAGGCCGGTCCGCCACACGAGA
GGGAGGGGAGGTCGATCGGAAGGCGCTGCTGCGGGAGGCCGTCAAAAAGG
CAGGGCTGGTGGCTGGTGGCTGGGGAGTGGCTGCAGCGGGATTGCCACAG
CTGGTGGGAGCTAAGAAGATTATCAACTTGGAGGAGGCGCGAGAGCTGGG
CGAGAAGAAGATGATCGAGATAGAGAAGGCAAAGGGACCGCTCATCAAGg
tgcgtggtaggggaggggaggtgggcatgtggagtgtttggcgtaactat
tgctcaaatgacagcatagcatggtattgttgttgttctgatgtctctgt
ctactcatcatgcgtttcctcgcccaacaacacactcaacaaagGTACGA
GACAACGTAAAGTACCGCGAAGAGCTTGTCGGCAAAGGGCCTACCTTTGA
AAAAGGCGACCTCGTCAAGATTCGCTACCAGGTCTACAAGGGTAATGGGG
ACTACATGTTTTCCACGGGCTATGGGCGAGAATTCCAGGATGATGTGGGA
Ggtgagggagggggccaggggacgggggggacgggggtcgtatgggctcg
tgagatagcaagcgtaggatgaaatgctgcgaaaggcaacaacaatagcg
cggcagtcatttcctacatgcactcacaagtcttcatctccttcccttct
ccgctccctccctcccttccttcctacctccctccgctcattcctcagAT
ACGTATGACTTCACGTTCGGCCGTCCCAATTCCATCCCCAAGGGGGCAGA
GATCGGTATGGAAGGCATGCGTGTGGGGGGGAAACGCAAGATTTCTGTTC
CGCCCGAGCTGGGGTGGAAGACCTCAGGGGGTTTTCCGGAACCGCAAACG
TTTGGAGGAAAGAGGAAATTGTTGAACCACCAGAACGAGTTTCTGCAGTT
TGAAGTGGAAGTAATTAGGTCCCGGCCGCGGAAGACATAA
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protein sequence of NO04G01550.1

>NO04G01550.1-protein ID=NO04G01550.1-protein|Name=NO04G01550.1|organism=Nannochloropsis oceanica|type=polypeptide|length=266bp
MKLSSCAGISNRESRRVSSALLLAPLLVLHNLLALAMTVDSFVVLPISQR
TGSLARVCGQGRSATREGGEVDRKALLREAVKKAGLVAGGWGVAAAGLPQ
LVGAKKIINLEEARELGEKKMIEIEKAKGPLIKVRDNVKYREELVGKGPT
FEKGDLVKIRYQVYKGNGDYMFSTGYGREFQDDVGDTYDFTFGRPNSIPK
GAEIGMEGMRVGGKRKISVPPELGWKTSGGFPEPQTFGGKRKLLNHQNEF
LQFEVEVIRSRPRKT*
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Synonyms
Publications