NO04G01460, NO04G01460 (gene) Nannochloropsis oceanica

Overview
NameNO04G01460
Unique NameNO04G01460
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length360
Alignment locationchr4:455284..455643 -

Link to JBrowse

Properties
Property NameValue
DescriptionRibosomal protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:455284..455643 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR035977Ribosomal_L36_sp
IPR000473Ribosomal_L36
Homology
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BLAST of NO04G01460 vs. NCBI_GenBank
Match: EWM28624.1 (mitochondrial ribosomal l36 protein [Nannochloropsis gaditana])

HSP 1 Score: 145.2 bits (365), Expect = 1.300e-31
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 0 
Query:    1 MKLRTSLRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGARRKLHTDAEGALEGKAEACXXXXXXXXXGDFLSSREGLGHPLWLQHQAGPISSFSDLVATVSPSIHAFVNRLRGLFSK 120
            MKLRT+LRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRG RRKLH+ +  A    A              F   +EG+G+PLWLQ +AGP++S  DL+ ++SP++ AFVN +R  FS+
Sbjct:    1 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSFTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 119
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BLAST of NO04G01460 vs. NCBI_GenBank
Match: XP_005856072.1 (mitochondrial ribosomal l36 protein, partial [Nannochloropsis gaditana CCMP526] >EKU20293.1 mitochondrial ribosomal l36 protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 142.9 bits (359), Expect = 6.500e-31
Identity = 69/119 (57.98%), Postives = 85/119 (71.43%), Query Frame = 0 
Query:    1 MKLRTSLRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGARRKLHTDAEGALEGKAEACXXXXXXXXXGDFLSSREGLGHPLWLQHQAGPISSFSDLVATVSPSIHAFVNRLRGLFSK 120
            MKLRT+LRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRG RRKLH+ +  A    A                  +EG+G+PLWLQ +AGP++S  DL+ ++SP++ AFVN +R  FS+
Sbjct:    8 MKLRTALRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGPRRKLHSSSSDAAFQDAHMSCSCSEHGQDTSLTLYKEGIGNPLWLQRKAGPVASLHDLMNSISPAVQAFVNNIRVFFSR 126
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BLAST of NO04G01460 vs. NCBI_GenBank
Match: XP_013883871.1 (PREDICTED: 39S ribosomal protein L36, mitochondrial [Austrofundulus limnaeus])

HSP 1 Score: 63.2 bits (152), Expect = 6.500e-7
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 0 
Query:    1 MKLRTSLRRLCTSCYMVRRQGRLFVYCKANPRHKQRQG 39
            MK R+SL+R C  C+ VRR+GRLFVYCK NPRHKQRQG
Sbjct:   83 MKTRSSLKRRCKDCFFVRRRGRLFVYCKTNPRHKQRQG 120
The following BLAST results are available for this feature:
BLAST of NO04G01460 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 3
Match NameE-valueIdentityDescription
EWM28624.11.300e-3158.82mitochondrial ribosomal l36 protein [Nannochlorops... [more]
XP_005856072.16.500e-3157.98mitochondrial ribosomal l36 protein, partial [Nann... [more]
XP_013883871.16.500e-773.68PREDICTED: 39S ribosomal protein L36, mitochondria... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009667NSK009667Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01460.1NO04G01460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578450gene_1933Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g29gene2036Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01460.1NO04G01460.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01460 ID=NO04G01460|Name=NO04G01460|organism=Nannochloropsis oceanica|type=gene|length=360bp
ATGAAGCTTCGGACGTCCCTGCGTCGGCTCTGTACATCCTGCTACATGGT
GCGGCGGCAAGGCCGGCTCTTCGTCTACTGCAAGGCGAATCCAAGGCACA
AGCAAAGGCAAGGGCGTGGGGCGCGTCGCAAGCTGCATACGGACGCGGAG
GGCGCATTAGAGGGCAAGGCAGAGGCATGCGGATGCGGTGACCACCACCA
TCACCATGGCGATTTCCTTTCATCTCGGGAAGGGCTAGGCCATCCGTTGT
GGTTGCAGCATCAGGCAGGCCCCATCTCCTCTTTTTCAGACCTGGTCGCC
ACGGTGTCACCCTCTATACACGCGTTTGTGAACAGACTACGGGGGCTATT
TTCAAAATAG
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protein sequence of NO04G01460.1

>NO04G01460.1-protein ID=NO04G01460.1-protein|Name=NO04G01460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=120bp
MKLRTSLRRLCTSCYMVRRQGRLFVYCKANPRHKQRQGRGARRKLHTDAE
GALEGKAEACGCGDHHHHHGDFLSSREGLGHPLWLQHQAGPISSFSDLVA
TVSPSIHAFVNRLRGLFSK*
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Synonyms
Publications