NO04G01420, NO04G01420 (gene) Nannochloropsis oceanica

Overview
NameNO04G01420
Unique NameNO04G01420
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2369
Alignment locationchr4:443931..446299 +

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:443931..446299 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
Homology
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BLAST of NO04G01420 vs. NCBI_GenBank
Match: EWM28539.1 (hypothetical protein Naga_100009g24 [Nannochloropsis gaditana])

HSP 1 Score: 65.1 bits (157), Expect = 4.100e-7
Identity = 73/243 (30.04%), Postives = 95/243 (39.09%), Query Frame = 0 
Query:    1 MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCL-SSTGTHPFHADNISMSTLARRPALAKVM------PSPRSLDTLGAGARHPTIRP-PLHIITLKLLEGCQDDKKEHYGLPDPSSPSCVPAWAPPPAHDGPCYGQSDNEDEDCPCPLMFKKQSGFICPSPIC---SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADIMHKLVQEMERLYNTQQQQ 233
            MKR   S NLVELG G+   PSKK  R LLS+SASS+QLAERL +  ST T         + T  R  A    +      P  R     G  +  P   P P HIIT+K  + C+++  +  G        CVPAW  P A+D    G               +  SG  CP   C   +                                          AD+ + L++EM+RLYN Q+ Q
Sbjct:    1 MKRCHGSCNLVELGLGSSPKPSKKFHRVLLSTSASSDQLAERLNVPMSTST---------IRTYTRPKAFEHFLKPLTFQPCQRLEALSGDASVSPQSAPLPKHIITVKFPKPCEEEDND--GSATCEHLRCVPAWVAPLAYDELQMG-------------FGRTISGNGCPGTFCGTSTTTTAATSLSGSYIGEDEQRDRENHCCIDQGRGATKSLSKAREADMFNDLIKEMQRLYNAQEGQ 219
The following BLAST results are available for this feature:
BLAST of NO04G01420 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Position :
0
Zoom :
x 1
2004006008001000120014001600180020002200SequenceEWM28539.1
Match NameE-valueIdentityDescription
EWM28539.14.100e-730.04hypothetical protein Naga_100009g24 [Nannochlorops... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01420.1NO04G01420.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578440gene_1929Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g24gene2040Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01420.1NO04G01420.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01420 ID=NO04G01420|Name=NO04G01420|organism=Nannochloropsis oceanica|type=gene|length=2369bp
AAACTATCTTGTTGGGCACCTTGCGACCCCCAAGTTGTTAGAGTATTGCC
AAATTAGTCCCGCCTTTCACATACTGAAGCCACGGTGAGCTGGCACCAAA
GTTTATACGTGGGTGCTCTTCGTGACATCTTCAAGTAGATGTGCAAGAGG
AGTGCGTGTCGTTCTCCAGCTTCAAGGCCAATCCGGCGCCCACGTCGTCC
TCCTTCTCCATCTTATTTGTGTTGTTTCGTCTCGTTCTCTTCTCGTTGGA
GGTATACCTCTGGAGCCTTCGGGAGTCACCTCATCCACACATTTGATGTC
ACGGCCTGTCGAGTTTGTGGGTGGTCAAGGTGCCTGGCAGTTCGCGGCTC
CTCGTTCCCCTTCCAACCCCAAGCGACGAATATGTCTTATCCAAAATCAT
GCCCGCCTCTGCCTTCAATCTTGCGCCCTGGACGTATTTATTTCGTCCAG
AGGGGACAGAAGCTGCACAATCACTCTCCCCATTCATCTAGTTGACCGGC
TTTGCGGGCCGCGCTGTCCAAAGGCCTTCGTCTCATGACCTTGATTGCCT
CGGCCTTCCAACTTTGTGCCGCCTGATTTGATGCTCACGCTTCCCTTGCC
CACCCCAATCCACCCACCACAGCCAACACACAAGAAAACAGCATCACTCA
GACAACTATGAAGCGAAGTCGCAGTAGCTTCAACCTGGTCGAACTCGGCC
GCGGCGCTCCGCTTCTCCCCTCCAAAAAGCTTCAACGGGCGCTCTTGTCC
TCCTCGGCGTCAAGCGAGCAACTTGCTGAACGTCTGTGTTTATCCAGTAC
TGGCACCCACCCCTTTCATGCAGATAATATTTCCATGTCTACCCTGGCGC
GGCGCCCTGCCCTCGCCAAAGTTATGCCTTCCCCTCGTTCCTTGGACACA
TTGGGTGCCGGCGCCCGCCATCCCACTATCCGCCCCCCCCTGCACATTAT
CACGCTCAAGCTCCTCGAAGGCTGCCAAGACGACAAAAAAGAACATTATG
GCCTTCCCGACCCTTCATCACCTTCCTGTGTACCTGCTTGGGCTCCGCCT
CCTGCCCACGACGGGCCGTGCTATGGCCAGTCCGACAATGAGGACGAGGA
CTGCCCTTGCCCTCTTATGTTCAAGAAGCAGAGTGGTTTCATCTGCCCCA
GCCCGATATGTAGCGCCACCACAACCGCTTCCAGCAGCAGTGGTAGCTAT
ATGAGCGATAACGAGTCGTTTGAGAGCGACGGAAGCGGCTGCAATGGCGG
AGGGAGCGGAACTCCCTCTTCCTCGTCCACACCGACCGAGGCTGACATCA
TGCACAAGCTGGTGCAAGAAATGGAGCGCTTATACAACACTCAACAGCAA
CAGCTGCAGCAGCATCATCAATATACAATGCGAACTAAGGCACTGTCGGT
AAGGAGTATTCCCCGCCGGCCGTTTTCCCTCCACTACTGGGAGGACGGAC
CAAACTACCATTCCTCCACCTCGGCAGCAGCAGCAGCAGCAACAGCGGTG
TGTGGGTCCCCAGGCTTGACCACTTAAATGAGCGAATCAGAAGGAAAGAA
CAGGAGTGAAATGGAAGATAAGATTGGCTGAGAGTGACGCCATGAGTGCT
TGAGCACGTCACATAAAGATGGAGAGGGCAATGCGTGTGGCGCATGCATG
TCTCTTTCTCCTCATCCCCATAATTTTTTCTTCAAGCCGTAAGGGACTTG
AAAGACTTAGATTGAGATAACGAAACGAAAACCATAAACCATGTGGGATG
GACAGAATCCCAAAGAAATTTACTGTTGGCTTTGTGCGTGAGAGAGACAG
ACGAAAGAGAGACGATAACAGACGACAGGTTGTCGATATTAGCATGTATA
CGGGGCGCCATGTTCGTAGAAGAGACATGGGATGTGTTGCTAGCTAACTA
CGGACCCATTGTTGAAATCCGTGACGAAGGAACTGATTGTGAACCTTTTT
CATTTTGTACAACATCGCGACTTGAAGAAAAAGGGCGATCAAGACCTGAC
AACCGTGTGTGCATGCATGAGAATCTATCATTTCGAAATAGATGTGGCGG
AAGCCGAGATAAATGAGATAGACTCGTGTGTATATAAAACCCGCCATTCT
TTGTGCACCTCTGTGTGTGTGCGCGCATGCACAAATGAAATATGCCCTTA
TTCGGCCTTTCAGTCATAAGTAAAAGTAAGGAATTTCGTCCATCTCTCCA
CGTGAACTTTTAACACTACCGGCTACAATTAATCACATCCAATTATCTCC
ACTCTGTTATTTTAAGAAATGACTGCATGGGTGAACCATGGAGTGATGGC
AAGCACAAACTCGGTCAAATAAAACAAGAGAAAGAAAACTGGCATGAATT
GGTATATTTTCCATCATTG
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protein sequence of NO04G01420.1

>NO04G01420.1-protein ID=NO04G01420.1-protein|Name=NO04G01420.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MKRSRSSFNLVELGRGAPLLPSKKLQRALLSSSASSEQLAERLCLSSTGT
HPFHADNISMSTLARRPALAKVMPSPRSLDTLGAGARHPTIRPPLHIITL
KLLEGCQDDKKEHYGLPDPSSPSCVPAWAPPPAHDGPCYGQSDNEDEDCP
CPLMFKKQSGFICPSPICSATTTASSSSGSYMSDNESFESDGSGCNGGGS
GTPSSSSTPTEADIMHKLVQEMERLYNTQQQQLQQHHQYTMRTKALSVRS
IPRRPFSLHYWEDGPNYHSSTSAAAAAATAVCGSPGLTT*
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Synonyms
Publications