NO04G01270, NO04G01270 (gene) Nannochloropsis oceanica

Overview
NameNO04G01270
Unique NameNO04G01270
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1098
Alignment locationchr4:397567..398664 -

Link to JBrowse

Properties
Property NameValue
DescriptionSerine threonine protein kinase
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:397567..398664 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0045454cell redox homeostasis
GO:0016310phosphorylation
Vocabulary: INTERPRO
TermDefinition
IPR036249Thioredoxin-like_sf
IPR036410HSP_DnaJ_Cys-rich_dom_sf
IPR013766Thioredoxin_domain
Vocabulary: Molecular Function
TermDefinition
GO:0016301kinase activity
Homology
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BLAST of NO04G01270 vs. NCBI_GenBank
Match: EWM28569.1 (serine threonine protein kinase [Nannochloropsis gaditana])

HSP 1 Score: 250.4 bits (638), Expect = 7.000e-63
Identity = 144/270 (53.33%), Postives = 175/270 (64.81%), Query Frame = 0 
Query:   12 TRRRRIADDSFSPLLFLLLLVGPTPAVAFSTLGSSSSSNFSP-------PITSTTPLIDRVPTFRLYQGGVCQTQVPGRGDAAECRARLHEAI-TSLTKPIATSSIDRNDKGSGKGGVSSSVSTSSRRRTVAAILEIDSLSALEDLLAEQQQHQEKSTQG-------TDEVLLVEFYGQACKQCIALAPLFESLPYVYPNRRLRFGRADVTNFPTLVVPPXXPQTFQGLDRSQNIEERLDGCPTCGGGGFVVCVECGGKGHLVRSVSGHT 267
            T  RR   D   PLL LLL   P  A  FST  SSS+   +           +T PLIDRVPTFR YQGGVCQ Q+ GRG  AECRARLH AI T L    ++   +R +    + GV       S+R  VA I+EI+SL  LE +L +Q+  Q  + Q         D+VLLV+FYG++CKQC+ L PL+++LP+VY ++ LRFGRADVTNFPTLVVP XX Q F  LDRSQNIE+RL+GCP CGGGGFVVC EC G+GHL+RSV GHT
Sbjct:    8 TSARRTTQDFSLPLLVLLLSRLPL-ACTFSTPTSSSAIGINHGDVLKTLNNAATIPLIDRVPTFRFYQGGVCQLQLSGRGGLAECRARLHVAISTLLNNKTSSKQTEREEIHHEENGV-------SQRCLVADIVEIESLEMLEGMLEKQRVQQSSTAQSVSCGSNLNDDVLLVKFYGRSCKQCVELGPLYDTLPFVYRDKSLRFGRADVTNFPTLVVPXXXXQNFASLDRSQNIEDRLEGCPRCGGGGFVVCTECNGQGHLIRSVDGHT 269
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BLAST of NO04G01270 vs. NCBI_GenBank
Match: XP_005856069.1 (serine threonine protein kinase [Nannochloropsis gaditana CCMP526] >EKU20290.1 serine threonine protein kinase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 169.5 bits (428), Expect = 1.600e-38
Identity = 79/125 (63.20%), Postives = 99/125 (79.20%), Query Frame = 0 
Query:  150 LAEQQQHQEKSTQGT--------DEVLLVEFYGQACKQCIALAPLFESLPYVYPNRRLRFGRADVTNFPTLVVPPXXPQTFQGLDRSQNIEERLDGCPTCGGGGFVVCVECGGKGHLVRSVSGHT 267
            + E+Q+ Q+ ST  +        D+VLLV+FYG++CKQC+ L PL+++LP+VY ++ LRFGRADVTNFPTLVVP XX Q F  LDRSQNIE+RL+GCP CGGGGFVVC EC G+GHL+RSV GHT
Sbjct:    1 MLEKQRVQQSSTAQSVSCGSNLNDDVLLVKFYGRSCKQCVELGPLYDTLPFVYRDKSLRFGRADVTNFPTLVVPXXXXQNFASLDRSQNIEDRLEGCPRCGGGGFVVCTECNGQGHLIRSVDGHT 125
The following BLAST results are available for this feature:
BLAST of NO04G01270 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 2
Match NameE-valueIdentityDescription
EWM28569.17.000e-6353.33serine threonine protein kinase [Nannochloropsis g... [more]
XP_005856069.11.600e-3863.20serine threonine protein kinase [Nannochloropsis g... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009690NSK009690Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01270.1NO04G01270.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578381gene_1910Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100009g7gene2055Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01270.1NO04G01270.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01270 ID=NO04G01270|Name=NO04G01270|organism=Nannochloropsis oceanica|type=gene|length=1098bp
CGCCCTCTGAGTGACTCCTTCAAGTGAGGAAACACAACCACACCCAAGCA
AACCCACACCCACACCCATTTACCAATACGCAATCATTTCTTCTCTACAT
CTCCCCATGGAGTACACAGATAGAGTGCAATCATGCCGCTTCCTCGAGTG
AGCACTGCCACCTGTACGAGAAGAAGAAGAATTGCGGACGACTCCTTCTC
TCCTCTCCTCTTCCTCCTACTCCTCGTTGGGCCGACTCCTGCGGTCGCTT
TCAGTACCCTGGGCAGCAGCAGCAGCAGCAATTTTAGCCCTCCAATCACT
TCTACGACACCTTTGATTGACCGTGTCCCGACCTTTCGCTTGTACCAGGG
AGGCGTGTGTCAGACACAGGTGCCGGGGCGTGGAGATGCCGCCGAGTGCC
GCGCTCGCCTGCATGAAGCCATCACGAGTTTGACAAAACCTATCGCTACA
AGCAGTATTGATCGCAACGACAAGGGAAGTGGAAAGGGGGGGGTAAGCAG
CAGTGTCTCGACAAGCTCAAGAAGACGCACCGTGGCGGCTATCCTCGAGA
TAGACTCACTTTCGGCTTTGGAAGATCTGCTGGCAGAGCAGCAACAGCAC
CAAGAGAAATCCACGCAAGGCACTGATGAGGTGCTGCTTGTCGAATTTTA
CGGACAAGCTTGCAAGCAATGTATTGCCCTCGCGCCTTTGTTTGAGTCCT
TGCCCTACGTCTACCCCAACCGGCGGCTGCGATTCGGGCGGGCAGACGTG
ACAAACTTCCCTACCTTGGTTGTACCACCACCACCGCCCCAAACCTTCCA
GGGCTTGGATCGTAGCCAAAATATTGAAGAACGGCTGGACGGGTGCCCTA
CCTGTGGTGGTGGTGGGTTTGTAGTTTGCGTGGAGTGTGGGGGAAAAGGG
CATTTGGTTCGGAGCGTGAGTGGCCATACTCTGGCAGACGTATGCATGAC
CTGTATGGGCCAAAAGAAGATACCATGTCCGCAGTGTGGGGGGAAATGTT
ACTTATGTTGAGGCGGTTAAGGAAGAGTGGGAAATGAATTGAAATCAAAG
TAAAGATTGATTATAAACTAAATGAAATGGTTGAACGTGGGTGGGGAG
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protein sequence of NO04G01270.1

>NO04G01270.1-protein ID=NO04G01270.1-protein|Name=NO04G01270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=293bp
MPLPRVSTATCTRRRRIADDSFSPLLFLLLLVGPTPAVAFSTLGSSSSSN
FSPPITSTTPLIDRVPTFRLYQGGVCQTQVPGRGDAAECRARLHEAITSL
TKPIATSSIDRNDKGSGKGGVSSSVSTSSRRRTVAAILEIDSLSALEDLL
AEQQQHQEKSTQGTDEVLLVEFYGQACKQCIALAPLFESLPYVYPNRRLR
FGRADVTNFPTLVVPPPPPQTFQGLDRSQNIEERLDGCPTCGGGGFVVCV
ECGGKGHLVRSVSGHTLADVCMTCMGQKKIPCPQCGGKCYLC*
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Synonyms
Publications