NO04G01180, NO04G01180 (gene) Nannochloropsis oceanica
Overview
Properties
Mutants
Expression
Hover the mouse over a column in the graph to view expression values. Alignments
The following features are aligned
Analyses
This gene is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this gene:
Homology
BLAST of NO04G01180 vs. NCBI_GenBank
Match: EWM28517.1 (ribosome maturation protein sbds [Nannochloropsis gaditana]) HSP 1 Score: 511.1 bits (1315), Expect = 3.500e-141 Identity = 315/460 (68.48%), Postives = 343/460 (74.57%), Query Frame = 0 Query: 1 MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARGSLQVLELNVQQEGEADVDFEIARKEMMKRHQQEEIA-AKAVKAVEARDDVQEESGMEKEEDKDVLEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASLVSTTISNTSGGREKMVLTWQKKSAGGTRLACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDADEMFFQDRGV 460 MSRRIGQPVNQVRLTNVAMVR+HKGGKRFEIACYRNKVLSWRQGVE DIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQ++VEALLR ILEKGEYHPSDKEREAM ES YRDIATIVA KSVNP SNRPYTV MILSGMK+IHFAVNPTR AKQQALEVI++L+DVMPL+RAKM L+ VCPT EDLA+V+ G+ GID EA G ++E+DLLVDPG+FR VDELVRG +G+L VLELNVQQEGEADVD EIARK M++ Q++E A A KA E E+E K+ +EG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX W+K G RLACNTCRVDF DAK YREHYRTDWHRYNLKLKEKGGGPV E EFE+VDADEMF R + Sbjct: 1 MSRRIGQPVNQVRLTNVAMVRIHKGGKRFEIACYRNKVLSWRQGVEKDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQEDVEALLRLILEKGEYHPSDKEREAMHESLYRDIATIVALKSVNPTSNRPYTVNMILSGMKDIHFAVNPTRGAKQQALEVIRRLQDVMPLERAKMRLKVVCPTTEDLAQVIKGMASFGIDGNTVEATGKKEEVDLLVDPGLFRRVDELVRGKGKGALHVLELNVQQEGEADVDLEIARKAAMRKEQRDESAVANTCKAF--------EEAQEREGRKETDQEGEAGFLRGANVKAHGDEDSVVEGAEEHVDKQGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWEKARPGSNRLACNTCRVDFQDAKEYREHYRTDWHRYNLKLKEKGGGPVSEAEFELVDADEMFCSYRDI 452
BLAST of NO04G01180 vs. NCBI_GenBank
Match: CBN77759.1 (SBDS domain, zinc finger protein [Ectocarpus siliculosus]) HSP 1 Score: 298.5 bits (763), Expect = 3.500e-77 Identity = 261/491 (53.16%), Postives = 312/491 (63.54%), Query Frame = 0 Query: 1 MSRRIGQPVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDT----AAAEAAGTRQEMDLLVDPGVFRSVDELVRGAARG--SLQVLELNVQQEGEADVDFEIARKEMMKRHQQEE-----------------------------IAAKAVKAVEARDDVQEESGMEKEEDKDVLEEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTASLVSTTISNTSGGREKMVLTWQKKSAGGTRLACNTCRVDFDDAKGYREHYRTDWHRYNLKLKEKGGGPVGEKEFEIVDADEMFFQD 457 MSR I QPVNQVRLTNVA+VR++K GKRFEIACYRNKV++WR VETD+DEVLQ ++F NVSKGVLA +KDLM FG DN R IL+KGE SDKER+ LES +RD+ATIV+EK VNPASNRPYTV MI M+++HF+ +PTR+AKQQALEVIKKL++VMP+DRAKM LR T ED + L ++G+D+ A A + + +D LVDPG++R V+E VR A G +L+VL+L+VQQEGEAD+D E+ RK ++ + E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RL C TC + F D +REHY++D HRYNLKLK KGG PV E+EF +VDA++ F D Sbjct: 1 MSRAITQPVNQVRLTNVAVVRLNKTGKRFEIACYRNKVVNWRNRVETDLDEVLQIESVFENVSKGVLAKNKDLMKAFGTDNQLESCRIILDKGEMQVSDKERQVALESVFRDVATIVSEKCVNPASNRPYTVSMIEKAMRDVHFSAHPTRSAKQQALEVIKKLKEVMPIDRAKMKLRIT--TDEDSTPLKEALGELGVDSFENGGGAAAGSSGEVLDFLVDPGLYRDVEEAVRTVASGRCALEVLQLSVQQEGEADMDVELMRKGLLAVKLKGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGKAKRRLGCITCGLTFTDTGAHREHYKSDLHRYNLKLKMKGGAPVSEEEFRLVDANDFFHSD 489
BLAST of NO04G01180 vs. NCBI_GenBank
Match: ACQ59017.1 (Ribosome maturation protein SBDS [Anoplopoma fimbria]) HSP 1 Score: 254.2 bits (648), Expect = 7.600e-64 Identity = 133/243 (54.73%), Postives = 171/243 (70.37%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV++WR G E D+DEVLQTH +F+NVSKG +A +DL FG D++ + +QIL KGE SDKER LE+T+RDIATIVAEK VNP + RPYTV +I MK+IH++V P +++KQQALEVI++L++ M + RA M LR V P E A+ + K + +E + EM LVDPG FR +DEL+R RGSL+VL L +EGE Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVVNWRAGAEKDLDEVLQTHTVFVNVSKGQVAKKEDLTKSFGTDDLTEICKQILAKGELQVSDKERHTQLETTFRDIATIVAEKCVNPETKRPYTVNLIEGAMKDIHYSVKPNKSSKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKKLKEKLKPLLQVVESEDFDEQLEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGE 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: ACQ58627.1 (Ribosome maturation protein SBDS [Anoplopoma fimbria]) HSP 1 Score: 253.4 bits (646), Expect = 1.300e-63 Identity = 132/245 (53.88%), Postives = 172/245 (70.20%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGEAD 251 P NQ+RLTNVA+VRM +GGKRFEIACY+NKV++WR G E D+DEVLQTH +F+NVSKG +A +DL FG D++ + +QIL KGE SDKER LE+T+RDIATIVAEK VNP + RPYTV +I MK+IH++V P +++KQQALEVI++L++ M + RA M LR V P E A+ + K + +E + EM LVDPG FR +DEL+R RGSL+VL L +EGE + Sbjct: 6 PTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVNWRAGAEKDLDEVLQTHTVFVNVSKGQVAKKEDLTKSFGTDDLTEICKQILAKGELQVSDKERHTQLETTFRDIATIVAEKCVNPETERPYTVNLIEGAMKDIHYSVKPNKSSKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKKLKEKLKPLLQVVESEDFDEQLEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGEEE 248
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_003459489.1 (PREDICTED: ribosome maturation protein SBDS [Oreochromis niloticus]) HSP 1 Score: 252.3 bits (643), Expect = 2.900e-63 Identity = 132/243 (54.32%), Postives = 170/243 (69.96%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQSQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_004569637.1 (ribosome maturation protein SBDS [Maylandia zebra] >XP_005932642.1 PREDICTED: ribosome maturation protein SBDS [Haplochromis burtoni] >XP_006805267.1 PREDICTED: ribosome maturation protein SBDS-like [Neolamprologus brichardi]) HSP 1 Score: 251.9 bits (642), Expect = 3.800e-63 Identity = 132/243 (54.32%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER+ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_005745081.1 (PREDICTED: ribosome maturation protein SBDS [Pundamilia nyererei]) HSP 1 Score: 251.9 bits (642), Expect = 3.800e-63 Identity = 132/243 (54.32%), Postives = 169/243 (69.55%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER+ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILAKGELQVSDKERQTQLETMFRDIATIVAEKCVNPETKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEELEMVCLVDPGCFREIDELIRCETRGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_008424774.1 (PREDICTED: ribosome maturation protein SBDS [Poecilia reticulata]) HSP 1 Score: 250.4 bits (638), Expect = 1.100e-62 Identity = 130/243 (53.50%), Postives = 170/243 (69.96%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL+ FG + + +QIL KGE SDKER++ LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V P +++KQQALEVI++L++ M + RA M LR P E A+ + K + +E EM +LVDPG FR +DEL+R RGSL+VL L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTGDQTEICKQILSKGELQVSDKERQSQLETMFRDIATIVAEKCVNPDTRRPYTVSLIERAMKDIHYSVKPNKSSKQQALEVIRQLKETMEIQRAHMRLRLAVPAKE--AKRLREKLKPLLQVVESEEFDEELEMVVLVDPGCFREIDELIRCETKGRGSLEVLSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_015243750.1 (PREDICTED: ribosome maturation protein SBDS [Cyprinodon variegatus]) HSP 1 Score: 250.4 bits (638), Expect = 1.100e-62 Identity = 131/243 (53.91%), Postives = 170/243 (69.96%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL+ FG D+ + RQIL KGE SDKER++ LE+ +RDIA+IVAEK VNP + RPYTV +I MK+IH++V P ++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+V+ L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVVSWRSGAEKDLDEVLQTHSVFVNVSKGQMAKKDDLVKAFGTDDQTEICRQILAKGELQVSDKERQSQLETMFRDIASIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKPNKSTKQQALEVIRQLKESMEIQRAHMRLRLVIPAKE--AKRLKEKLKPLLQVVESEEFDEELEMVCLVDPGCFREIDELIRCETKGRGSLEVVSLKDVEEGD 246
BLAST of NO04G01180 vs. NCBI_GenBank
Match: XP_003968661.1 (PREDICTED: ribosome maturation protein SBDS [Takifugu rubripes]) HSP 1 Score: 249.6 bits (636), Expect = 1.900e-62 Identity = 131/243 (53.91%), Postives = 170/243 (69.96%), Query Frame = 0 Query: 8 PVNQVRLTNVAMVRMHKGGKRFEIACYRNKVLSWRQGVETDIDEVLQTHAIFLNVSKGVLASSKDLMDCFGQDNVEALLRQILEKGEYHPSDKEREAMLESTYRDIATIVAEKSVNPASNRPYTVKMILSGMKEIHFAVNPTRNAKQQALEVIKKLRDVMPLDRAKMHLRAVCPTAEDLAEVVAGLRKMGIDTAAAEAAGTRQEMDLLVDPGVFRSVDELVR--GAARGSLQVLELNVQQEGE 249 P NQ+RLTNVA+VRM KGGKRFEIACY+NKV+SWR G E D+DEVLQTH++F+NVSKG +A DL FG D++ + +QIL KGE SDKER+A LE+ +RDIATIVAEK VNP + RPYTV +I MK+IH++V +++ KQQALEVI++L++ M + RA M LR V P E A+ + K + +E EM LVDPG FR +DEL+R RGSL+V+ L +EG+ Sbjct: 6 PTNQIRLTNVAVVRMKKGGKRFEIACYKNKVMSWRSGAEKDLDEVLQTHSVFVNVSKGQVAKKDDLTKAFGTDDLTEICKQILTKGELQVSDKERQAQLETMFRDIATIVAEKCVNPDTKRPYTVSLIERAMKDIHYSVKASKSTKQQALEVIRQLKETMEIQRAHMRLRLVLPAKE--AKRLKEKLKPLLQVVESEDFDEDLEMVCLVDPGCFREIDELIRCETKGRGSLEVISLKDVEEGD 246 The following BLAST results are available for this feature:
BLAST of NO04G01180 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes) Total hits: 20
Pagesback to topRelationships
This gene is member of the following syntenic_region feature(s):
This gene is orthologous to the following gene feature(s):
The following polypeptide feature(s) derives from this gene:
The following gene feature(s) are orthologous to this gene:
The following mRNA feature(s) are a part of this gene:
Sequences
The following sequences are available for this feature:
gene sequence >NO04G01180 ID=NO04G01180|Name=NO04G01180|organism=Nannochloropsis oceanica|type=gene|length=1380bpback to top protein sequence of NO04G01180.1 >NO04G01180.1-protein ID=NO04G01180.1-protein|Name=NO04G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=460bpback to top Synonyms
Publications
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