NO04G01160, NO04G01160 (gene) Nannochloropsis oceanica

Overview
NameNO04G01160
Unique NameNO04G01160
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length963
Alignment locationchr4:370103..371065 -

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Properties
Property NameValue
DescriptionLipocalin protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:370103..371065 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012674Calycin
IPR000566Lipocln_cytosolic_FA-bd_dom
Homology
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: EWM28512.1 (lipocalin protein [Nannochloropsis gaditana])

HSP 1 Score: 331.6 bits (849), Expect = 2.200e-87
Identity = 174/264 (65.91%), Postives = 199/264 (75.38%), Query Frame = 0 
Query:    9 LAASAAMLL----AVSAVETLPEMRHDDLERDTPSWPGPIAPVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPLFAGFLRKPRPTVQGPDCLYSPVPSVFASGSESENVSVY-VERKGGVESMVDESMSLRGHDAMAEDVARLHGALRAGGPK 268
            L   AA+LL    A  AVETL E+      R TPSWPGPI  V+E+D+EAYTGRWFQ+Y N LV+YTFELGGVCVTADYGLL NGTG+SVHNAQNFL+PNGTTTIING A AMNASEPGKLTV FD IPFPGSYWI+KLGP+EDG YQYSVVTDAYAITLFILARDP TF + YE+EV EFV+PLF+GFLRKPR TVQG +CLYSP PS         N++V   E KG      + +++    D MA  VARL   +R+G P+
Sbjct:   10 LGLLAAVLLTGFPASEAVETLHELSG---FRQTPSWPGPIPAVSEIDIEAYTGRWFQVYTNFLVQYTFELGGVCVTADYGLLPNGTGISVHNAQNFLEPNGTTTIINGNAMAMNASEPGKLTVNFDAIPFPGSYWIIKLGPIEDGVYQYSVVTDAYAITLFILARDPGTFADLYEEEVKEFVDPLFSGFLRKPRLTVQGAECLYSPEPS-------PSNLTVEGAEGKGNTHD--EAALASEDEDEMAASVARLRKDVRSGRPQ 261
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_021345891.1 (apolipoprotein D-like [Mizuhopecten yessoensis] >OWF54090.1 Apolipoprotein D [Mizuhopecten yessoensis])

HSP 1 Score: 169.1 bits (427), Expect = 1.900e-38
Identity = 87/170 (51.18%), Postives = 107/170 (62.94%), Query Frame = 0 
Query:   44 IAPVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTG-VSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPV---EDGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPL-FAGFLRKPRPTVQGPDCLY 209
            I  VTELDV  Y GRW+Q+YA+  V  TFE   +CVTADY +  +G+G V V N +    PNGT   ING AT   +S+PGKLTV  +  PFP  YW++KLGP     D +YQYSVVTD   +TLF+LARDP TFK  Y  EV++F+    F   L  P  T QG DC+Y
Sbjct:   28 IKTVTELDVPKYLGRWYQMYASESVVATFEKDALCVTADYSMSTDGSGKVIVRNGETLKTPNGTFKTINGYAT--TSSDPGKLTVNLETAPFPAPYWVIKLGPATFGNDTQYQYSVVTDNLKVTLFVLARDPETFKRDYNDEVVQFLKQQGFTNLLNSPVATYQGSDCMY 195
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_782410.1 (PREDICTED: apolipoprotein D [Strongylocentrotus purpuratus])

HSP 1 Score: 167.2 bits (422), Expect = 7.200e-38
Identity = 88/164 (53.66%), Postives = 108/164 (65.85%), Query Frame = 0 
Query:   47 VTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGEYQYSVVTDAYAITLFILARDPATFKERYEKE-VLEFVNPL-FAGFLRKPRPTVQGPDCLY 209
            V ELDV+AY GRW+Q+Y +L+V  TFE    CVTADYGL A+GT +SV NA     P+G    I G AT  +AS+PGKLTV F  +P PG YWI+KLGPV  G+YQYSVV+D+   TLF+LARD + F    EKE VLEF+    F  F  +P+ T Q   C Y
Sbjct:   40 VNELDVQAYLGRWYQVYTDLVVNVTFERNAKCVTADYGLNADGT-ISVFNANTVGTPDGDFNTITGTATVPDASQPGKLTVQFPGVPVPGDYWILKLGPVVGGQYQYSVVSDSNKATLFVLARDASAFMGSDEKETVLEFLRESGFKCFWNRPQETYQSDQCNY 202
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_001629056.1 (predicted protein [Nematostella vectensis] >EDO36993.1 predicted protein [Nematostella vectensis])

HSP 1 Score: 158.7 bits (400), Expect = 2.500e-35
Identity = 81/170 (47.65%), Postives = 107/170 (62.94%), Query Frame = 0 
Query:   44 IAPVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFV-NPLFAGFLRKPRPTVQGPDCLYSPVP 213
            I  V  L+V +Y GRW+Q+Y++ +V+ TFE   VCVTADY L  +G  + V N+    +P+G    I G A   +   PGKL V FD +P  GSYWI+KLGPV  G+YQYS+VTD    TLF+L+RDP  + E+Y+KE+ EF+ N  F     KPR T Q  DC Y+P P
Sbjct:   19 IDTVPTLNVTSYLGRWYQMYSDFIVEETFERNAVCVTADYTLRKDGK-IGVVNSNRDKKPDGELKQITGYAYQPDPEVPGKLKVHFDTVPVEGSYWILKLGPVSGGQYQYSIVTDGLKATLFVLSRDPNNY-EKYDKEIQEFLKNNGFTHLWNKPRKTYQSEDCKYAPKP 186
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_001629028.1 (predicted protein [Nematostella vectensis] >EDO36965.1 predicted protein, partial [Nematostella vectensis])

HSP 1 Score: 156.4 bits (394), Expect = 1.300e-34
Identity = 76/163 (46.63%), Postives = 102/163 (62.58%), Query Frame = 0 
Query:   47 VTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPL-FAGFLRKPRPTVQGPDCLY 209
            V  L++ +Y GRW+Q+YA+L+V  T+E   VC TADY L  +G  + VHN+     P+G    I+G A   +   PGK  + FD +P  GSYW+VKLGPV DG+YQYS+VTD+  + LFIL+RDP+T+  +Y  EV+ F     F  F  KPR T Q  DC Y
Sbjct:    3 VPALNITSYAGRWYQMYADLIVDETYERNSVCTTADYTLRKDGK-IGVHNSGRVKTPDGEVKAISGYAYRKDPKVPGKFVLHFDSVPVDGSYWVVKLGPVSDGQYQYSIVTDSTTLQLFILSRDPSTY-SKYNDEVMAFCKENGFTHFWNKPRKTYQSEDCKY 163
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_022089366.1 (uncharacterized protein LOC110978570 [Acanthaster planci])

HSP 1 Score: 154.1 bits (388), Expect = 6.300e-34
Identity = 81/180 (45.00%), Postives = 109/180 (60.56%), Query Frame = 0 
Query:   38 PSWPGPIAPVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVE------DGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVN-PLFAGFLRKPRPTVQGPDCLYSP 211
            P++  P   V+ELDV++Y GRW+Q++A+L+V  TFE    CVTADYGL  N T +SV+NA     P G    I G A   N +EPG+L V F   P PG YW+++LGP E        +YQYS+V+D     LF+LARDPA F+ R++ +VL+++    F  F  KP  TVQ   C Y P
Sbjct:  230 PAYFSPPKTVSELDVQSYLGRWYQMFADLVVVSTFERNADCVTADYGLNPNNT-ISVYNANTDGSPTGPRKAIKGYAYVPNKNEPGQLLVKFPVNPIPGPYWVIQLGPKETTWRNAQPQYQYSIVSDPMRAGLFVLARDPADFRSRFQADVLQWLKVNQFDHFYNKPIETVQTEACKYPP 408
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_020899403.1 (temperature-induced lipocalin-1-like [Exaiptasia pallida])

HSP 1 Score: 148.7 bits (374), Expect = 2.600e-32
Identity = 77/169 (45.56%), Postives = 101/169 (59.76%), Query Frame = 0 
Query:   46 PVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPV---EDGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPL-FAGFLRKPRPTVQGPDCLYSP 211
            PV  L++  Y GRW+Q+YA+ +V  TFE  GVC TADY L  +G  + V N+Q    P G  + I G A A +  EPGK  + FD +P  G YWI+KLGP    ED +YQYSVVTD   + +++LARDP  FK  Y++E+  F+    F  F  KP  T+Q  DC Y P
Sbjct:   21 PVPALNITRYLGRWYQMYADKIVMSTFEKDGVCGTADYXLRKDGK-LGVLNSQRIKTPTGELSQITGYAYAPDPKEPGKFKLHFDVVPVDGDYWIIKLGPPSFGEDKKYQYSVVTDRLHLQMYVLARDPQAFKNEYDEEIKTFLTTNGFDHFWNKPIATLQSKDCEYVP 188
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_020899402.1 (temperature-induced lipocalin-1-like [Exaiptasia pallida] >KXJ14952.1 Outer membrane lipoprotein Blc [Exaiptasia pallida])

HSP 1 Score: 146.7 bits (369), Expect = 1.000e-31
Identity = 77/170 (45.29%), Postives = 99/170 (58.24%), Query Frame = 0 
Query:   44 IAPVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPV---EDGEYQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPL-FAGFLRKPRPTVQGPDCLYS 210
            I  V  L++  Y GRW+Q+Y + +V  TFE  GVC+TADY  +     + V N+Q    P G  + I G A   +  EPGKL V FD  P  G YW++KLGP    ED +YQYSVVTD   +TLF+LARDP  FK  Y+KEV+ F+N   F  F  KP   +Q   C Y+
Sbjct:   21 IDTVXALNITRYLGRWYQMYGDKIVMSTFEKNGVCITADY-TVRKDEKIGVLNSQRIKTPTGNLSQITGYAYVPDPKEPGKLKVHFDVSPVDGDYWVIKLGPQSFGEDKKYQYSVVTDRLGLTLFVLARDPQAFKNDYDKEVITFLNEKGFDHFWDKPIAILQSNKCQYA 189
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_794433.1 (PREDICTED: uncharacterized protein LOC589705 [Strongylocentrotus purpuratus])

HSP 1 Score: 146.4 bits (368), Expect = 1.300e-31
Identity = 84/170 (49.41%), Postives = 106/170 (62.35%), Query Frame = 0 
Query:   47 VTELDVEAYTGRWFQLYANL---LVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGEYQYSVVTDAYAI-TLFILARDPATFKERYEKEVLEFVNPL--FAGFLRKPRPTVQGPDCLYSP 211
            V EL  EAY GRW+Q+Y N    L    FE    CVTADYGLL N T VSV+NA N+      T  I+G A  ++ S+PGKL V  D +P  G YWI KLGP+ +G+YQYS++TD  A   LF+LARDPA F E Y+KEV+E++ PL  F G  ++P       DC+Y P
Sbjct:   24 VPELQAEAYIGRWYQVYTNFWADLFSNIFEPD--CVTADYGLL-NSTYVSVYNA-NWRFDENRTDDISGYAYIVDVSDPGKLKVVLDGVPVEGDYWIFKLGPIVEGQYQYSLITDGEAARQLFVLARDPAEFAELYDKEVMEYL-PLQGFTGERKQPYAITHNADCVYPP 188
[Close]
BLAST of NO04G01160 vs. NCBI_GenBank
Match: XP_015773049.1 (PREDICTED: outer membrane lipoprotein Blc-like [Acropora digitifera])

HSP 1 Score: 140.2 bits (352), Expect = 9.400e-30
Identity = 74/170 (43.53%), Postives = 99/170 (58.24%), Query Frame = 0 
Query:   44 IAPVTELDVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNFLQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGE---YQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPL-FAGFLRKPRPTVQGPDCLYS 210
            I  V+ L+V  Y GRW+Q+YA+ +V  TFE   VCVTADY  L     + V N++    P G    I G A   +   PGKL V  D +P    YW+VKLGP    +   YQYSV+TD + +TLF+LARD  TFK RY++EV E++    F+    KP  T+Q  +C+YS
Sbjct:   21 IDTVSSLNVTKYLGRWYQIYADAVVTSTFERDAVCVTADY-TLRKDEKIGVLNSERLKTPKGKGKNITGYAYVPDPKYPGKLKVHLDGVPIDAQYWVVKLGPPSFSDQHLYQYSVITDGFQVTLFVLARDVNTFKSRYDEEVKEWLKENGFSHVYNKPIATLQSDECIYS 189
The following BLAST results are available for this feature:
BLAST of NO04G01160 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Position :
0
Zoom :
x 1
100200300400500600700800900Expect = 2.20e-87 / Id = 65.91Expect = 1.90e-38 / Id = 51.18Expect = 7.20e-38 / Id = 53.66Expect = 2.50e-35 / Id = 47.65Expect = 1.30e-34 / Id = 46.63Expect = 6.30e-34 / Id = 45.00Expect = 2.60e-32 / Id = 45.56Expect = 1.00e-31 / Id = 45.29Expect = 1.30e-31 / Id = 49.41Expect = 9.40e-30 / Id = 43.53SequenceEWM28512.1XP_021345891.1XP_782410.1XP_001629056.1XP_001629028.1XP_022089366.1XP_020899403.1XP_020899402.1XP_794433.1XP_015773049.1
Match NameE-valueIdentityDescription
EWM28512.12.200e-8765.91lipocalin protein [Nannochloropsis gaditana][more]
XP_021345891.11.900e-3851.18apolipoprotein D-like [Mizuhopecten yessoensis] >O... [more]
XP_782410.17.200e-3853.66PREDICTED: apolipoprotein D [Strongylocentrotus pu... [more]
XP_001629056.12.500e-3547.65predicted protein [Nematostella vectensis] >EDO369... [more]
XP_001629028.11.300e-3446.63predicted protein [Nematostella vectensis] >EDO369... [more]
XP_022089366.16.300e-3445.00uncharacterized protein LOC110978570 [Acanthaster ... [more]
XP_020899403.12.600e-3245.56temperature-induced lipocalin-1-like [Exaiptasia p... [more]
XP_020899402.11.000e-3145.29temperature-induced lipocalin-1-like [Exaiptasia p... [more]
XP_794433.11.300e-3149.41PREDICTED: uncharacterized protein LOC589705 [Stro... [more]
XP_015773049.19.400e-3043.53PREDICTED: outer membrane lipoprotein Blc-like [Ac... [more]

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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL079nonsL079Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR109ngnoR109Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK009703NSK009703Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01160.1NO04G01160.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|578349gene_1898Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100131g14gene2064Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01160.1NO04G01160.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01160 ID=NO04G01160|Name=NO04G01160|organism=Nannochloropsis oceanica|type=gene|length=963bp
ATGCGCCGTTGCTACACTTCCTTCCTGGCCGCGTCCGCCGCTATGCTCCT
CGCTGTAAGTGCCGTGGAGACTTTGCCCGAGATGAGGCACGACGATCTCG
AGAGAGACACACCCAGCTGGCCCGGCCCGATTGCGCCCGTGACGGAGTTG
GATGTTGAAGCCTACACGGGGCGATGGTTTCAGgtaaatggcagaataaa
atctctagtgttgggaaaggggacgtggtggaattcgaaacgatcaagta
tttattttcctctccttgccctttcaacttgactcatgctcgctccactc
ggaaccacctcctccatctttcttttgtctcaaccctttaagTTGTACGC
CAATCTTCTCGTCAAGTATACCTTTGAACTGGGCGGCGTCTGCGTCACGG
CCGATTATGGCCTCCTCGCCAACGGCACAGGTGTGTCAGTCCACAACGCC
CAAAACTTCCTGCAGCCCAACGGCACCACGACCATCATCAACGGGCAAGC
CACCGCAATGAATGCCTCTGAGCCCGGCAAGTTGACCGTGACCTTTGATC
CCATCCCTTTCCCTGGTAGCTACTGGATCGTGAAGTTAGGTCCGGTGGAA
GACGGAGAGTATCAATACAGTGTGGTGACAGACGCGTATGCAATCACCCT
CTTCATCCTGGCGCGGGACCCCGCGACTTTCAAGGAGAGGTATGAGAAGG
AAGTCTTGGAATTTGTCAACCCGTTGTTCGCGGGTTTTTTGCGCAAGCCT
CGCCCGACCGTGCAGGGGCCGGACTGTCTGTACTCGCCTGTGCCTTCCGT
TTTTGCGAGTGGAAGCGAGAGTGAGAACGTGAGTGTGTATGTGGAACGAA
AAGGGGGAGTGGAGAGTATGGTGGACGAGAGTATGAGCCTCAGAGGCCAT
GACGCCATGGCGGAGGATGTGGCGCGCTTGCATGGGGCGTTGCGCGCAGG
GGGACCGAAGTAA
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protein sequence of NO04G01160.1

>NO04G01160.1-protein ID=NO04G01160.1-protein|Name=NO04G01160.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MRRCYTSFLAASAAMLLAVSAVETLPEMRHDDLERDTPSWPGPIAPVTEL
DVEAYTGRWFQLYANLLVKYTFELGGVCVTADYGLLANGTGVSVHNAQNF
LQPNGTTTIINGQATAMNASEPGKLTVTFDPIPFPGSYWIVKLGPVEDGE
YQYSVVTDAYAITLFILARDPATFKERYEKEVLEFVNPLFAGFLRKPRPT
VQGPDCLYSPVPSVFASGSESENVSVYVERKGGVESMVDESMSLRGHDAM
AEDVARLHGALRAGGPK*
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Synonyms
Publications