NO04G01010, NO04G01010 (gene) Nannochloropsis oceanica

Overview
NameNO04G01010
Unique NameNO04G01010
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length603
Alignment locationchr4:327808..328410 -

Link to JBrowse

Properties
Property NameValue
DescriptionUnknown protein
Mutants
Expression

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:327808..328410 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
GO annotation for IMET1v2 genes2019-07-10
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0016020membrane
Homology
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BLAST of NO04G01010 vs. NCBI_GenBank
Match: EWM28454.1 (hypothetical protein Naga_100636g3 [Nannochloropsis gaditana])

HSP 1 Score: 85.5 bits (210), Expect = 2.100e-13
Identity = 66/188 (35.11%), Postives = 81/188 (43.09%), Query Frame = 0 
Query:   16 RGMRIVKDEDGERMEWDEDLVLGRK-------RGGEDEGEGGVDVSDTTASTRTPLSRVPGEEEKDDMLMEGEESELLPIQSGEMEDLLGARAXXXXXXXXXXXXXXXXXXXKVTALKEMIXXXXXXXXXXXXXXXXXXXXXXXAGTYKTEHQRAAHCVMSFLFFITYTVFAFIGLRATLVTLKTAFG 197
            +GMRIVK+EDGER+EWDEDLVLGRK                                              G E +LLPIQ GEMED+LGAR                    K + +K ++                          YKTE +RAA C +SFLFFITYT FA IG+RA++ +L  A G
Sbjct:  386 KGMRIVKNEDGERLEWDEDLVLGRKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGVEGDLLPIQDGEMEDMLGAR-----WGGRGEGRLGRVGADKASTVKGLVEAILDEKRAAAEARTGGGVGV----QYKTEQERAARCALSFLFFITYTFFALIGIRASIGSLTAAVG 564
The following BLAST results are available for this feature:
BLAST of NO04G01010 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28454.12.100e-1335.11hypothetical protein Naga_100636g3 [Nannochloropsi... [more]
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Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005000NSK005000Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G01010.1NO04G01010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|537886gene_1882Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_100636g3gene2131Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G01010.1NO04G01010.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G01010 ID=NO04G01010|Name=NO04G01010|organism=Nannochloropsis oceanica|type=gene|length=603bp
ATGGAGGGGGAGGAGGAGGAGGACTTGAAGAAAGGAGGGAGGAAGAGGGG
GATGCGGATTGTGAAAGACGAGGATGGGGAGCGGATGGAGTGGGACGAGG
ACCTGGTGTTGGGGCGCAAGCGGGGAGGGGAGGACGAGGGGGAGGGAGGC
GTGGACGTGAGTGATACAACAGCCTCGACCAGGACCCCGTTGTCGAGGGT
GCCGGGGGAGGAGGAGAAGGATGACATGTTGATGGAGGGGGAGGAGAGTG
AGTTGTTGCCGATCCAGTCCGGGGAGATGGAGGATTTGCTAGGGGCGAGG
GCGGGAGGGAGGGGAGGAGGAGGAGGAGGGAGCTCGACCGCGGACGGGGG
AAATTTTGACAAAGTGACGGCTCTCAAAGAAATGATTGCGGCCATATTGG
AGGAGAAGCGACAGGCGGCGGAGGCCGGGGGGATGGGAGGGAGGGGGGGA
GGGATGGCAGGGACGTACAAGACGGAGCATCAACGGGCGGCGCATTGCGT
CATGTCGTTTTTGTTTTTCATAACGTATACGGTGTTTGCATTTATTGGCT
TGCGGGCCACGCTGGTAACCTTGAAGACGGCGTTTGGGGCGGATGGGAGG
TAA
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protein sequence of NO04G01010.1

>NO04G01010.1-protein ID=NO04G01010.1-protein|Name=NO04G01010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MEGEEEEDLKKGGRKRGMRIVKDEDGERMEWDEDLVLGRKRGGEDEGEGG
VDVSDTTASTRTPLSRVPGEEEKDDMLMEGEESELLPIQSGEMEDLLGAR
AGGRGGGGGGSSTADGGNFDKVTALKEMIAAILEEKRQAAEAGGMGGRGG
GMAGTYKTEHQRAAHCVMSFLFFITYTVFAFIGLRATLVTLKTAFGADGR
*
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Synonyms
Publications