NO04G00990, NO04G00990 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00990
Unique Name	NO04G00990
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1413
Alignment location	chr4:319832..321244 +

Link to JBrowse

Properties


Property Name	Value
Description	40S ribosomal protein S24

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:319832..321244 +

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
GO annotation for IMET1v2 genes	2019-07-10
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0005198	structural molecule activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR012678	Ribosomal_L23/L15e_core_dom
IPR001976	Ribosomal_S24e

Homology

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: EWM28456.1 (Ribosomal protein L23/L15e core domain protein [Nannochloropsis gaditana])

HSP 1 Score: 249.6 bits (636), Expect = 5.700e-63
Identity = 130/137 (94.89%), Postives = 133/137 (97.08%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPK ELQEII+GMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDT+EDAKKFEPKHRLVRAGL  KKETSRKQIKEAKNR KKIRGTGRRLA+HKAKKANK
Sbjct:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKTELQEIISGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTLEDAKKFEPKHRLVRAGLVVKKETSRKQIKEAKNRAKKIRGTGRRLAKHKAKKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: XP_008614349.1 (30S ribosomal protein S24e [Saprolegnia diclina VS20] >XP_012197589.1 hypothetical protein SPRG_03622 [Saprolegnia parasitica CBS 223.65] >EQC32408.1 30S ribosomal protein S24e [Saprolegnia diclina VS20] >KDO31704.1 hypothetical protein SPRG_03622 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 213.0 bits (541), Expect = 5.900e-52
Identity = 108/137 (78.83%), Postives = 123/137 (89.78%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPKAELQE IA M+K A   T FL+GFRTAFGGGKS+GF LIYDTV DAKKFEPK+RL+R GLK+K ETSRKQIKE+KNRGKK+RG GRR+ARHKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDTVNDAKKFEPKYRLIRQGLKDKVETSRKQIKESKNRGKKVRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: OQR98287.1 (40S ribosomal protein S24 [Achlya hypogyna])

HSP 1 Score: 212.6 bits (540), Expect = 7.700e-52
Identity = 108/137 (78.83%), Postives = 123/137 (89.78%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPKAELQE IA M+K A   T FL+GFRTAFGGGKS+GF LIYD+V DAKKFEPK+RL+R GLK+K ETSRKQIKEAKNRGKK+RG GRR+ARHKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDSVNDAKKFEPKYRLIRQGLKDKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: OQR81746.1 (40S ribosomal protein S24 [Thraustotheca clavata])

HSP 1 Score: 212.2 bits (539), Expect = 1.000e-51
Identity = 109/137 (79.56%), Postives = 122/137 (89.05%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            M+DK PVT+R+RKF+RNALLARRQM++DVLHPGRANVPKAELQE IA M+K A   T FL+GFRTAFGGGKS+GF LIYDTV DAKKFEPK+RL+R GLKEK ETSRKQIKE+KNR KKIRG GRR+ARHKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNALLARRQMLVDVLHPGRANVPKAELQEKIAKMYKIADTNTVFLYGFRTAFGGGKSSGFCLIYDTVNDAKKFEPKYRLIRQGLKEKVETSRKQIKESKNRAKKIRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: XP_009828476.1 (40S ribosomal protein [Aphanomyces astaci] >ETV81739.1 40S ribosomal protein [Aphanomyces astaci])

HSP 1 Score: 206.1 bits (523), Expect = 7.200e-50
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            M+DK PVT+R+RKF+RN LLARRQM++DVLHPGR NVPKAELQE +A M+K A   T FL+GFRTAFGGGKS+GFALIYDTV DAKKFEPK+RLVR GL EK E SRKQIKE+KNR KK+RG GRR+ARHKA KANK
Sbjct:    1 MSDKAPVTVRTRKFLRNTLLARRQMLVDVLHPGRPNVPKAELQEKLAKMYKVADTNTVFLYGFRTAFGGGKSSGFALIYDTVNDAKKFEPKYRLVRQGLSEKVEKSRKQIKESKNRAKKVRGVGRRIARHKANKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: GAY02939.1 (40S ribosomal protein [Pythium insidiosum])

HSP 1 Score: 204.5 bits (519), Expect = 2.100e-49
Identity = 105/137 (76.64%), Postives = 119/137 (86.86%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            MADK PVT+R+RKF+RNALL RRQM+++V+HPGRANVPKAELQE +A M+K     T FL+GFRTAFGGGKS+GF LIYD+V DAK+FEPKHRLVR GL EK ETSRKQIKEAKNRGKK RG GRR+ARHKA KANK
Sbjct:    1 MADKVPVTVRTRKFLRNALLNRRQMVVEVIHPGRANVPKAELQEKLAKMYKVKDATTVFLYGFRTAFGGGKSSGFCLIYDSVNDAKRFEPKHRLVRQGLAEKVETSRKQIKEAKNRGKKTRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: XP_009520718.1 (hypothetical protein PHYSODRAFT_285079 [Phytophthora sojae] >EGZ25430.1 hypothetical protein PHYSODRAFT_285079 [Phytophthora sojae])

HSP 1 Score: 204.1 bits (518), Expect = 2.700e-49
Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            MADK PVT+R+RKF+RN LLARRQM+++V+HPGRANVPKAELQE IA M+K     T FL+GFRT FGGGKS+GF L+YDTV DAK+FEPK+RL+R GL EK ETSRKQIKEAKNRGKK+RG GRR+ARHKA KANK
Sbjct:    1 MADKVPVTVRTRKFLRNTLLARRQMVVEVIHPGRANVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: XP_024585614.1 (40s ribosomal protein [Plasmopara halstedii] >CEG49245.1 40s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 203.8 bits (517), Expect = 3.600e-49
Identity = 103/137 (75.18%), Postives = 118/137 (86.13%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            MADK PVT+R+RKF+RN LLARRQM+++V+HPGR NVPKAELQE IA M+K     T FL+GFRT FGGGKS+GF L+YDTV DAK+FEPK+RL+R GL EK ETSRKQIKEAKNRGKKIRG GRR+ARHKA KANK
Sbjct:    1 MADKAPVTVRTRKFLRNTLLARRQMVVEVIHPGRPNVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKIRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: OWZ06811.1 (40S ribosomal protein S24 [Phytophthora megakarya])

HSP 1 Score: 203.0 bits (515), Expect = 6.100e-49
Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            MADK PVT+R+RKF+RN+LLARRQM+++V+HPGR NVPKAELQE IA M+K     T FL+GFRT FGGGKS+GF L+YDTV DAK+FEPK+RL+R GL EK ETSRKQIKEAKNRGKKIRG GRR+ARHKA KANK
Sbjct:    1 MADKVPVTVRTRKFLRNSLLARRQMVVEVIHPGRPNVPKAELQEKIAKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKIRGVGRRIARHKAAKANK 137

[Close]

BLAST of NO04G00990 vs. NCBI_GenBank
Match: XP_002904762.1 (40S ribosomal protein S24, putative [Phytophthora infestans T30-4] >AAY43420.1 ribosomal protein S19 [Phytophthora infestans] >EEY53144.1 40S ribosomal protein S24, putative [Phytophthora infestans T30-4])

HSP 1 Score: 201.4 bits (511), Expect = 1.800e-48
Identity = 101/137 (73.72%), Postives = 119/137 (86.86%), Query Frame = 0

Query:    1 MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMHKGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLKEKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANK 138
            MADK PVT+R+RKF+RN+LLARRQM+++V+HPGR NVPKAELQE I+ M+K     T FL+GFRT FGGGKS+GF L+YDTV DAK+FEPK+RL+R GL EK ETSRKQIKEAKNRGKK+RG GRR+ARHKA KANK
Sbjct:    1 MADKVPVTVRTRKFLRNSLLARRQMVVEVIHPGRPNVPKAELQEKISKMYKVKDANTVFLYGFRTQFGGGKSSGFGLVYDTVNDAKRFEPKYRLIRQGLVEKVETSRKQIKEAKNRGKKVRGVGRRIARHKAAKANK 137

The following BLAST results are available for this feature:

BLAST of NO04G00990 vs. NCBI_GenBank

BLAST of NO04G00990 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
EWM28456.1	5.700e-63	94.89	Ribosomal protein L23/L15e core domain protein [Na...	[more]
XP_008614349.1	5.900e-52	78.83	30S ribosomal protein S24e [Saprolegnia diclina VS...	[more]
OQR98287.1	7.700e-52	78.83	40S ribosomal protein S24 [Achlya hypogyna]	[more]
OQR81746.1	1.000e-51	79.56	40S ribosomal protein S24 [Thraustotheca clavata]	[more]
XP_009828476.1	7.200e-50	76.64	40S ribosomal protein [Aphanomyces astaci] >ETV817...	[more]
GAY02939.1	2.100e-49	76.64	40S ribosomal protein [Pythium insidiosum]	[more]
XP_009520718.1	2.700e-49	75.18	hypothetical protein PHYSODRAFT_285079 [Phytophtho...	[more]
XP_024585614.1	3.600e-49	75.18	40s ribosomal protein [Plasmopara halstedii] >CEG4...	[more]
OWZ06811.1	6.100e-49	75.18	40S ribosomal protein S24 [Phytophthora megakarya]	[more]
XP_002904762.1	1.800e-48	73.72	40S ribosomal protein S24, putative [Phytophthora ...	[more]

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Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL074	nonsL074	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR059	ncniR059	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR105	ngnoR105	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005002	NSK005002	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G00990.1	NO04G00990.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578282	gene_1879	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_100710g2	gene2128	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G00990.1	NO04G00990.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G00990 ID=NO04G00990|Name=NO04G00990|organism=Nannochloropsis oceanica|type=gene|length=1413bp
CGTTAGTCCACACCTGCCGTCCATAGACAGCCCAAGACAATGGCGAGAGC
ATGGGAGCAAAAGAGGCATGCCGCATGACTGCGTGGCTGCCTGCTTTTCA
TCTCTATGCGTGTATCTGTGAATGTGTGAGGGCGCCATGATCATCACTTA
ATGAGACTTTTGCAAGGGACGGACGGCCACGAGCAGCTTGCCTCCCCTCC
CTCCCTTCTTCCACGCTTCTTCTCCTCCTTCTTCCTTCTCGTCATCCATC
TCACCCACCCAATCCCTCCCATCACGGGTACATTAACTACATTCGCTCAC
AGAGTGTAACCATGGCGGACAAAGGCCCCGTGACCATTCGCTCCCGGAAG
TTCATCCGTAATGCCCTTCTCGCGCGGCGTCAGATGgtaagtgtcccacg
cctaagccacagcgtctctaaattcaatgtcatgccttggtttgcatgaa
catccattcactcacgatctcctatcattactcactacagATCATTGACG
TGCTTCACCCCGGCCGTGCCAACGTGCCCAAGGCGGAGCTGCAAGAGATC
ATCGCAGGGgtaagtttctgctcgcctgaaagttgacgagtgatggggag
agggggcttggtggaggacctgcagtgatcaagtccatacgaaaataaga
agaagtaggaaagggagggtgtgtgaaggaggatgctgcgatagacgata
cgacgacccggagctctcctctcgccctttgatgcccacaaccctcccca
tcaaactcaccctctttcttccccacttccccacactcataacgacagAT
GCACAAGGGCGCCAAGCCGGAGACGACGTTCCTGTTTGGCTTCCGCACGG
CCTTCGGTGGGGGGAAGAGCACGGGTTTTGCCTTGATTTACGATACGGTA
GAGGATGCGAAGAAGTTTGAGCCTAAACACCGGTTGGTCCGCGCGGGGTT
GAAGGAGAAGAAGGAGACTTCGCGAAAGCAGATTAAAGAGGCCAAGAACC
GAGGAAAGAAGATTCGTGGTACAGGCCGACGGCTGGCCAGGCACAAGGCC
AAGAAGGCGAACAAGGGGTAAAGCAGCAGCAGCAGCAGGAGGAGGAATGG
CGAGCCGAGTGGTTGCGAGGGAAGGAGGGGTAGAAGGGTTTAGAGCGAGC
CGTGTTCAGAGAGGCAGGCACGGACGAGGTAGGGGAAGAGGGAAAAGGTC
GAAAGACTTTTATTTCTTGCTTCTTTCTCCTCTACTCTTCTTGTCGTTCT
TCTTTTGGTGTTCCTCTCTGTGGAGGGGAGGTGTTAGGGAGGGCTCATGG
CTGTTGGTGACGATAAGTCAGTTAAGAAAGAAGCAAGGCTGGCCAAGCCG
ACAACTATCAAAACAACCATACAGGGCAGCTGTGGGAGGGAGAGCAGGAG
GGTGGGGACGGTA

protein sequence of NO04G00990.1

>NO04G00990.1-protein ID=NO04G00990.1-protein|Name=NO04G00990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MADKGPVTIRSRKFIRNALLARRQMIIDVLHPGRANVPKAELQEIIAGMH
KGAKPETTFLFGFRTAFGGGKSTGFALIYDTVEDAKKFEPKHRLVRAGLK
EKKETSRKQIKEAKNRGKKIRGTGRRLARHKAKKANKG*

Synonyms

Publications