NO04G00980, NO04G00980 (gene) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO04G00980
Unique Name	NO04G00980
Type	gene
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	4233
Alignment location	chr4:315573..319805 -

Link to JBrowse

Properties


Property Name	Value
Description	Elongation factor Tu

Mutants

Expression

Analysis:

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr4	genome	chr4:315573..319805 -

Analyses

This gene is derived from or has results from the following analyses


Analysis Name	Date Performed
GSE178672	2023-12-15
PRJNA933693	2023-10-26
PRJNA943449	2023-07-19
PXD016054	2021-01-14
PXD016699	2021-01-08
GSE149904	2020-10-10
NoIMET1_WT_HS	2020-09-29
PXD010030	2020-03-16
GSE139615	2020-03-11
PRJNA241382	2020-03-11
BLASTP analysis of N. oceanica IMET1 genes	2019-07-11
InterPro analysis for N. oceanica IMET1 genes	2019-07-11
PXD008721	2019-04-30
PRJNA182180	2019-04-25
Gene prediction for N. oceanica IMET1	2017-10-24

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003924	GTPase activity
GO:0005525	GTP binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009001	Transl_elong_EF1A/Init_IF2_C
IPR027417	P-loop_NTPase
IPR009000	Transl_B-barrel
IPR004161	Transl_elong_EFTu/EF1A_2
IPR004160	Transl_elong_EFTu/EF1A_C
IPR000795	TF_GTP-bd_dom

Homology

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: WP_027134771.1 (elongation factor Tu [Geminicoccus roseus])

HSP 1 Score: 591.7 bits (1524), Expect = 1.900e-165
Identity = 294/392 (75.00%), Postives = 331/392 (84.44%), Query Frame = 0

Query:   44 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            F+RTKPH NIGT+GHVDHGKTTLTAAITK+LAEAGGA F +YD IDKAPEE+ R ITINT+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P LVVF+NK DMV D ELLELVE+EVRELL  Y FPGDD PII+GSALAA+ G DDAIG++ IL LM+AVDE IP P R +DKPFLMP+EDVFSI+GRGTVVTGRVE+G +K GEEVEIVG+    TKTT TGVEMF+K LD G AGDNVG LLR  KRDDV+RGQVL  PGS+  + +F AE YVLT+EEGGRHTPF  NYRPQFY RT+DVTGS+ L  G EM MPGDN T+ V+LI P  + +GLRFA+REGGRTV AGVVA++I+
Sbjct:    6 FKRTKPHANIGTVGHVDHGKTTLTAAITKILAEAGGASFTAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPALVVFLNKVDMVDDPELLELVELEVRELLSKYNFPGDDIPIIKGSALAALEGKDDAIGREQILALMKAVDEYIPQPERAVDKPFLMPIEDVFSISGRGTVVTGRVERGVVKVGEEVEIVGIKPT-TKTTCTGVEMFRKLLDRGEAGDNVGVLLRGTKRDDVERGQVLCKPGSITPHTKFTAETYVLTKEEGGRHTPFFGNYRPQFYFRTTDVTGSVELPAGTEMVMPGDNVTMVVTLIAPIAMEQGLRFAIREGGRTVGAGVVAEVIQ 396

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_023548889.1 (elongation factor Tu, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 590.9 bits (1522), Expect = 3.300e-165
Identity = 299/421 (71.02%), Postives = 342/421 (81.24%), Query Frame = 0

Query:   15 SSSRQVACTLLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLT-AAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            +SS      LL  +  A+ P         F RTKPH+N+GTIGHVDHGKTTLTAAITKVLAE G A+  ++D+IDKAPEER+R ITI T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS  DGAMPQT+EHILLA+QVG+P LV F+NK D V D ELL+LVEME+RELL FY+FPGDD PI+RGSAL+A+ GT++ IGK AILKLMEAVDE IP P R LDKPFLMP+EDVFSI GRGTV TGRVEQG IK GEEVE++GLT   P KTTVTGVEMFKK LD G AGDNVG LLR +KR+D+QRGQV+A PGS+KTYK+FEAE+YVLT+EEGGRHT F+ NYRPQFY+RT+D+TG + L E  +M MPGDN T    LI P  L  G RFA+REGGRTV AGVV+K+I
Sbjct:   29 ASSHCSISALLSRNDGASSPIPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEERKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGAMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLDLVEMELRELLSFYKFPGDDIPIVRGSALSALQGTNEEIGKKAILKLMEAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKKFEAEIYVLTKEEGGRHTAFMSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTAAFELILPVPLEAGQRFALREGGRTVGAGVVSKVI 449

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: ETI46377.1 (elongation factor Tu, partial [Phytophthora parasitica P1569] >ETK86328.1 elongation factor Tu, partial [Phytophthora parasitica] >ETL39734.1 elongation factor Tu, partial [Phytophthora parasitica] >ETL92853.1 elongation factor Tu, partial [Phytophthora parasitica] >ETM46171.1 elongation factor Tu, partial [Phytophthora parasitica] >ETP16185.1 elongation factor Tu, partial [Phytophthora parasitica CJ01A1])

HSP 1 Score: 590.5 bits (1521), Expect = 4.300e-165
Identity = 293/410 (71.46%), Postives = 342/410 (83.41%), Query Frame = 0

Query:   24 LLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKL 434
            LL  S  A     +R+++T F R+KPHLN+GTIGHVDHGKTTLTAAITKVL+E GGAEF SY DIDKAPEER R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNK D V DEELLELVEME+RELL+ Y+FP DD P+++GSALAAV G D  IG+DA+LKLM+ VD  IP P RD +KPFLMPVEDVFSI+GRGTVV+GRVEQG I TG+EVE+VGL  + TKTT TGVEMFKK+LD G AGDNVG LLR +KRD+V RGQVL  PG++  + +FEAE+YVL +EEGGRHTPF  NYRPQF+ RT+DVTG+I L +G EM MPGDNT + + LI+P  L  G++F++REGGRT+ AGVV+K+
Sbjct:   33 LLATSAKAGSRSATRSMAT-FDRSKPHLNVGTIGHVDHGKTTLTAAITKVLSETGGAEFTSYADIDKAPEERARGITISTAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEELLELVEMEIRELLEAYDFPADDIPVVQGSALAAVEGRDHPIGRDAVLKLMDEVDAYIPDPVRDFEKPFLMPVEDVFSISGRGTVVSGRVEQGVINTGDEVELVGLKPS-TKTTCTGVEMFKKSLDRGQAGDNVGLLLRGLKRDEVLRGQVLCKPGTINPHTKFEAEVYVLKKEEGGRHTPFFSNYRPQFFFRTADVTGNILLKDGTEMVMPGDNTAIDIELIHPIALDNGMKFSIREGGRTIGAGVVSKV 440

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_008906113.1 (elongation factor Tu [Phytophthora parasitica INRA-310] >ETN08365.1 elongation factor Tu [Phytophthora parasitica INRA-310] >ETO75057.1 elongation factor Tu [Phytophthora parasitica P1976] >KUF84078.1 Elongation factor Tu [Phytophthora nicotianae] >KUF99491.1 hypothetical protein AM588_10010988 [Phytophthora nicotianae])

HSP 1 Score: 590.5 bits (1521), Expect = 4.300e-165
Identity = 293/410 (71.46%), Postives = 342/410 (83.41%), Query Frame = 0

Query:   24 LLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKL 434
            LL  S  A     +R+++T F R+KPHLN+GTIGHVDHGKTTLTAAITKVL+E GGAEF SY DIDKAPEER R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNK D V DEELLELVEME+RELL+ Y+FP DD P+++GSALAAV G D  IG+DA+LKLM+ VD  IP P RD +KPFLMPVEDVFSI+GRGTVV+GRVEQG I TG+EVE+VGL  + TKTT TGVEMFKK+LD G AGDNVG LLR +KRD+V RGQVL  PG++  + +FEAE+YVL +EEGGRHTPF  NYRPQF+ RT+DVTG+I L +G EM MPGDNT + + LI+P  L  G++F++REGGRT+ AGVV+K+
Sbjct:    7 LLATSAKAGSRSATRSMAT-FDRSKPHLNVGTIGHVDHGKTTLTAAITKVLSETGGAEFTSYADIDKAPEERARGITISTAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEELLELVEMEIRELLEAYDFPADDIPVVQGSALAAVEGRDHPIGRDAVLKLMDEVDAYIPDPVRDFEKPFLMPVEDVFSISGRGTVVSGRVEQGVINTGDEVELVGLKPS-TKTTCTGVEMFKKSLDRGQAGDNVGLLLRGLKRDEVLRGQVLCKPGTINPHTKFEAEVYVLKKEEGGRHTPFFSNYRPQFFFRTADVTGNILLKDGTEMVMPGDNTAIDIELIHPIALDNGMKFSIREGGRTIGAGVVSKV 414

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: ETP44255.1 (elongation factor Tu, partial [Phytophthora parasitica P10297])

HSP 1 Score: 590.5 bits (1521), Expect = 4.300e-165
Identity = 293/410 (71.46%), Postives = 342/410 (83.41%), Query Frame = 0

Query:   24 LLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKL 434
            LL  S  A     +R+++T F R+KPHLN+GTIGHVDHGKTTLTAAITKVL+E GGAEF SY DIDKAPEER R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNK D V DEELLELVEME+RELL+ Y+FP DD P+++GSALAAV G D  IG+DA+LKLM+ VD  IP P RD +KPFLMPVEDVFSI+GRGTVV+GRVEQG I TG+EVE+VGL  + TKTT TGVEMFKK+LD G AGDNVG LLR +KRD+V RGQVL  PG++  + +FEAE+YVL +EEGGRHTPF  NYRPQF+ RT+DVTG+I L +G EM MPGDNT + + LI+P  L  G++F++REGGRT+ AGVV+K+
Sbjct:   33 LLATSAKAGSRSATRSMAT-FDRSKPHLNVGTIGHVDHGKTTLTAAITKVLSETGGAEFTSYADIDKAPEERARGITISTAHVEYETSKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEELLELVEMEIRELLEAYDFPADDIPVVQGSALAAVEGRDHPIGRDAVLKLMDEVDAYIPDPVRDFEKPFLMPVEDVFSISGRGTVVSGRVEQGVINTGDEVELVGLQPS-TKTTCTGVEMFKKSLDRGQAGDNVGLLLRGLKRDEVLRGQVLCKPGTINPHTKFEAEVYVLKKEEGGRHTPFFSNYRPQFFFRTADVTGNILLKDGTEMVMPGDNTAIDIELIHPIALDNGMKFSIREGGRTIGAGVVSKV 440

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: ODU76321.1 (translation elongation factor Tu [Novosphingobium sp. SCN 63-17] >OJX92358.1 translation elongation factor Tu [Novosphingobium sp. 63-713])

HSP 1 Score: 590.5 bits (1521), Expect = 4.300e-165
Identity = 292/392 (74.49%), Postives = 330/392 (84.18%), Query Frame = 0

Query:   44 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            F+RTKPH NIGTIGHVDHGKTTLTAAITKVLAE GGA F  Y +IDKAPEER+R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DG MPQTREHILLA+QVG+P LVV+MNK D V DEE+LELVE+E+RELL  Y+FPGDD P+I GSALAA+ G DDAIGK++I KLMEAVD  IP PPR  DKPFLMPVEDVFSI+GRGTVVTGRVE G IK GEEVEIVGL A   KTTVTGVEMF+K LD G AGDN+G L R +KR+DV+RGQVLA PG+   +  FE+E+YVL+++EGGRHTPF  NYRPQFY RT+DVTGS+TL EG EM MPGDN  ++V LI P  + EGLRFA+REGGRTV +GVVAK+ K
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTTLTAAITKVLAETGGATFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLARQVGVPALVVYMNKVDQVDDEEILELVELEIRELLSSYDFPGDDIPVIPGSALAALEGRDDAIGKESIYKLMEAVDNYIPQPPRPTDKPFLMPVEDVFSISGRGTVVTGRVETGIIKVGEEVEIVGLKAT-AKTTVTGVEMFRKLLDQGEAGDNIGALCRGIKREDVERGQVLAKPGTCTPHTNFESEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGSVTLPEGTEMVMPGDNVKLQVELIAPIAMDEGLRFAIREGGRTVGSGVVAKITK 396

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_009530113.1 (mitochondrial translation elongation factor Tu [Phytophthora sojae] >EGZ16364.1 mitochondrial translation elongation factor Tu [Phytophthora sojae])

HSP 1 Score: 589.7 bits (1519), Expect = 7.300e-165
Identity = 291/410 (70.98%), Postives = 343/410 (83.66%), Query Frame = 0

Query:   24 LLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKL 434
            LL  S  A +   +R+++T F R+KPHLN+GTIGHVDHGKTTLTAAITKVL+E GGAEF SY DIDKAPEER R ITI+T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNK D V DEELLELVEME+RELL+ Y+FP DD P+++GSALAAV G D  IG+DA+L+LM+ VD  IP P RD +KPFLMPVEDVFSI+GRGTVV+GRVEQG I TG+EVE+VGL  + TKTT TGVEMFKK+LD G AGDNVG LLR +KRD+V RGQVL  PG++  + +FEAE+YVL +EEGGRHTPF  NYRPQF+ RT+DVTG+I L +G EM MPGDNT + + LI+P  L  G++F++REGGRT+ AGV++K+
Sbjct:    7 LLATSAKAGRAAATRSMAT-FDRSKPHLNVGTIGHVDHGKTTLTAAITKVLSETGGAEFTSYADIDKAPEERARGITISTAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAGDGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEELLELVEMEIRELLEAYDFPADDIPVVKGSALAAVEGRDHPIGRDAVLQLMDEVDAYIPDPVRDFEKPFLMPVEDVFSISGRGTVVSGRVEQGVINTGDEVELVGLKPS-TKTTCTGVEMFKKSLDRGQAGDNVGLLLRGLKRDEVLRGQVLCKPGTINPHTKFEAEVYVLKKEEGGRHTPFFSNYRPQFFFRTADVTGNILLKDGTEMVMPGDNTAIDIELIHPIALDTGMKFSIREGGRTIGAGVISKV 414

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: WP_039334376.1 (MULTISPECIES: elongation factor Tu [Novosphingobium] >KHS46645.1 elongation factor Tu [Novosphingobium subterraneum])

HSP 1 Score: 589.7 bits (1519), Expect = 7.300e-165
Identity = 292/392 (74.49%), Postives = 329/392 (83.93%), Query Frame = 0

Query:   44 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            F+RTKPH NIGTIGHVDHGKTTLTAAITKVLAE GGA F  Y +IDKAPEER+R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDG ILVV+A DG MPQTREHILLA+QVG+P LVV+MNK D V DEE+LELVE+EVRELL  Y+FPGDD PI++GSALAA+ G DD IG+D+I  LMEAVD  IP PPR  DKPFLMPVEDVFSI+GRGTVVTGRVE G +K GEEVEIVGL    TKTTVTGVEMF+K LD G AGDN+G L+R VKR+DV+RGQVL  PGSVK + EF AE+YVL+++EGGRHTPF  NYRPQFY RT+DVTG + L EG EM MPGDN T+ V LI P  + EGLRFA+REGGRTV +GVV+K+ K
Sbjct:    6 FERTKPHCNIGTIGHVDHGKTTLTAAITKVLAETGGATFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMPQTREHILLARQVGVPALVVYMNKVDQVDDEEILELVELEVRELLSSYDFPGDDIPIVKGSALAALEGRDDNIGRDSINALMEAVDSYIPQPPRPTDKPFLMPVEDVFSISGRGTVVTGRVETGIVKVGEEVEIVGLKDT-TKTTVTGVEMFRKLLDQGEAGDNIGALVRGVKREDVERGQVLCKPGSVKPHTEFSAEVYVLSKDEGGRHTPFFANYRPQFYFRTTDVTGEVILPEGTEMVMPGDNVTLSVKLIAPIAMDEGLRFAIREGGRTVGSGVVSKITK 396

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_022992519.1 (elongation factor Tu, mitochondrial [Cucurbita maxima])

HSP 1 Score: 589.7 bits (1519), Expect = 7.300e-165
Identity = 298/421 (70.78%), Postives = 342/421 (81.24%), Query Frame = 0

Query:   15 SSSRQVACTLLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLT-AAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            +SS      LL  +  A+ P         F RTKPH+N+GTIGHVDHGKTTLTAAITKVLA+ G A+  ++D+IDKAPEE++R ITI T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS  DGAMPQT+EHILLA+QVG+P LV F+NK D V D ELL+LVEME+RELL FY+FPGDD PIIRGSAL+A+ GT++ IGK AILKLMEAVDE IP P R LDKPFLMP+EDVFSI GRGTV TGRVEQG IK GEEVE++GLT   P KTTVTGVEMFKK LD G AGDNVG LLR +KR+D+QRGQV+A PGS+KTYK+FEAE+YVLT+EEGGRHT F+ NYRPQFY+RT+D+TG + L E  +M MPGDN T    LI P  L  G RFA+REGGRTV AGVV+K+I
Sbjct:   29 ASSHSSISDLLSRNDGASSPIPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGAMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLDLVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGKKAILKLMEAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGPPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKKFEAEIYVLTKEEGGRHTAFMSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTAAFELILPVPLEAGQRFALREGGRTVGAGVVSKVI 449

[Close]

BLAST of NO04G00980 vs. NCBI_GenBank
Match: WP_073953849.1 (elongation factor Tu [Thalassospira sp. TSL5-1] >OKH89319.1 elongation factor Tu [Thalassospira sp. TSL5-1])

HSP 1 Score: 589.3 bits (1518), Expect = 9.500e-165
Identity = 291/392 (74.23%), Postives = 331/392 (84.44%), Query Frame = 0

Query:   44 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            F RTKPH+N+GT+GHVDHGKTTLTAAITKVLAE+GGA F+ Y  IDKAPEE+ R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQTREHILLA+QVG+P LVVFMNK D V DEELLELVEME+RELL  Y+FPGDD PII+GSALAA+ G DD IGK+AIL+LM+AVD+ IP P R  DKPFLMP+EDVFSI+GRGTVVTGRVE G +K GEEVEIVG+ A   KTTVTGVEMF+K LD G AGDN+G LLR  KR+DV+RGQVLA  GS+  + +F+AE Y+LT++EGGRHTPF  NYRPQFY RT+DVTGSI L EG EM MPGDN  +  +LI P  + EGLRFA+REGGRTV AGVVAK+I+
Sbjct:    6 FARTKPHVNVGTVGHVDHGKTTLTAAITKVLAESGGASFQDYSMIDKAPEEKARGITISTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMPQTREHILLARQVGVPALVVFMNKVDQVDDEELLELVEMEIRELLSSYDFPGDDIPIIKGSALAALEGRDDEIGKNAILELMKAVDDYIPAPDRPKDKPFLMPIEDVFSISGRGTVVTGRVETGIVKVGEEVEIVGIKAT-VKTTVTGVEMFRKLLDQGEAGDNIGALLRGTKREDVERGQVLAHVGSINPHTKFQAEAYILTKDEGGRHTPFFSNYRPQFYFRTTDVTGSIELPEGTEMVMPGDNVQMTATLIAPIAMDEGLRFAIREGGRTVGAGVVAKIIE 396

The following BLAST results are available for this feature:

BLAST of NO04G00980 vs. NCBI_GenBank

BLAST of NO04G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20


Match Name	E-value	Identity	Description
WP_027134771.1	1.900e-165	75.00	elongation factor Tu [Geminicoccus roseus]	[more]
XP_023548889.1	3.300e-165	71.02	elongation factor Tu, mitochondrial [Cucurbita pep...	[more]
ETI46377.1	4.300e-165	71.46	elongation factor Tu, partial [Phytophthora parasi...	[more]
XP_008906113.1	4.300e-165	71.46	elongation factor Tu [Phytophthora parasitica INRA...	[more]
ETP44255.1	4.300e-165	71.46	elongation factor Tu, partial [Phytophthora parasi...	[more]
ODU76321.1	4.300e-165	74.49	translation elongation factor Tu [Novosphingobium ...	[more]
XP_009530113.1	7.300e-165	70.98	mitochondrial translation elongation factor Tu [Ph...	[more]
WP_039334376.1	7.300e-165	74.49	MULTISPECIES: elongation factor Tu [Novosphingobiu...	[more]
XP_022992519.1	7.300e-165	70.78	elongation factor Tu, mitochondrial [Cucurbita max...	[more]
WP_073953849.1	9.500e-165	74.23	elongation factor Tu [Thalassospira sp. TSL5-1] >O...	[more]

Pages

Relationships

This gene is member of the following syntenic_region feature(s):


Feature Name	Unique Name	Species	Type
nonsL074	nonsL074	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ncniR059	ncniR059	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region
ngnoR105	ngnoR105	Nannochloropsis oceanica (N. oceanica IMET1)	syntenic_region

This gene is orthologous to the following gene feature(s):


Feature Name	Unique Name	Species	Type
NSK005004	NSK005004	Nannochloropsis salina (N. salina CCMP1776)	gene

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
NO04G00980.1	NO04G00980.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following gene feature(s) are orthologous to this gene:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|287513	gene_1877	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene
Naga_101021g1	gene2126	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
NO04G00980.1	NO04G00980.1	Nannochloropsis oceanica (N. oceanica IMET1)	mRNA

Sequences

The following sequences are available for this feature:

gene sequence
protein sequence

gene sequence

>NO04G00980 ID=NO04G00980|Name=NO04G00980|organism=Nannochloropsis oceanica|type=gene|length=4233bp
CGCCGGTGTTGTCATCGGTCGCTTACCAAGAACGAGCGTGCGGCAGCAAG
CAGGAATAGGAACTGTGTTGTGCACACAAACCACGCCAGCACGTTAGCAA
ACCTTCCGGAGATATTAAAAAACACCTTCCTAGGCCTGATTAGCGTGCGG
AATGGCTTTACCATCGCACAACATCTCTCTCTCTCTCTGTTGCTTCGTGT
TAGCCTCCCCACCCCCCAACCCACCCACCTCAGCAAGCAAGCAACAGATA
CTCGCCACTCGGCGCATGCCCCGTTCTGTCTAAGTGTCCCTCTCACCTCT
GCCTACGCTCATGTAGACACAGGAAGAAGGATGGTGCTCTCTATCATGGC
GTCCCGCCAACTGGTGGCCATTAGCAGCAGTAGGCAAGTCGCCTGTACCC
TGCTCAAGAACAGCAGGAACGgtacgtttttattacgcgacgcgtgaagg
gaaaacgtttcgcaaaggcaaaacagggggaagcttggacatgtaccaag
acggtggagctgcactctttaagaaaaagttcttaacgcggtggtgtcca
tctcgctcgcccgtccctcctttcccccccccccccccccccctcgcatc
aacgcagCCACCAAACCGCGAGTAAGCCGTGCCCTGTCCACGGCCTTCCA
ACGCACAAAGCCCCACTTGAATATTGGCACCATCGGACACGTCGACCACG
GCAAGACCACGCTTACAGCCGCTATCACCAAGgtagggaaggagggagga
aacgcggggggacgggtcaaacggtcgtccccgacagaggtacataccca
caacagagactcatccattcattctttcgtttctgccgtctcccgacagG
TGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATATTGAC
AAGGCCCCGGAAGAGCGACAGCGgtacgtgctactgcttgcttgtccctc
cctccgttccttccttcctccctccctccctcccgtcctccgactcaccc
atcttttattgatgtgctccacagCAAGATCACCATCAACACCTCGCATG
TGGAGTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCCCGGGC
CATGCTGACTACGTCAAGAATATGATCACGGGCGCGGCCCAGATGGACGg
tacgtcgccctccctcccttcctctctctctccctccctccctctctccc
tcccgccctctttatttctcgcgttcccgtagccatggctattctatgac
atgaaaattgagcggcacgtcgctttatcccccttccctccctttctcac
cttcacccttcctccctccctccctccctcccttcccccagGCGGCATCC
TGGTGGTGTCGGCCACCGACGGGGCCATGCCCCAGACGCGCGAACACATT
CTTCTCGCTAAGCAAGTGGGCATACCCCGCCTGGTCGTCTTCATGAACAA
ATGCGACATGGTCAAGGACGAGGAGCTCTTGGAGCTGGTGGAGATGGAAG
gtgagggagggagggagggagggagggggggggggggggggaagggttac
acacatcagtattaagtgcttgaaagatgcgatatttatataaattaagt
aatgagtaccttagtgcacgattcgccgctccagtggtgcagtatatgca
tagatagaacaaatatgtacgtgtgtagctcccatcgctgtcaaaggatc
agaaagggtgtattactgacgagtgggggcagtagatgtctcatcctccc
tcctccctccctgacttcctccttgtctccctccagTGCGTGAGCTCCTC
GACTTCTACGAGTTCCCGGGTGATGACACCCCCATCATCCGGGGCTCGGC
CTTGGCAGCTGTCAATGGGACAGACGATGCGATCGGgtaggtaccctgtc
cctccctcccttcgtcttttacgtctccacctgagtacccacgcacaatt
tgtcccgtccacaatatccccccctcccttccttcctccctcccttcctc
agAAAGGACGCCATCCTGAAGCTGATGGAGGCCGTGGACGAGACCATTCC
TACCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGCCCGTGGAGGACG
TTTTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGAAGGGTGGAGCAG
gtgagggagggagggaaggagggagggagggagggggggacctgtgacgg
gaaggatggagcaggtgacgagggaaggagggaaggagggaaggagggag
ggagggcgggtaggcagttatgtcttagacgacagtgagttgacattctg
tttctcaccactttcctcgttccatccctccctccttccctcccttcttc
cctccctccttcaacagGGCAAGATCAAGACAGGGGAGGAGGTGGAAATC
GTCGGTCTAACGGCTGCGCCCACCAAGACGACCGTTACAGgtaggggagg
agggaggagggacggagaaagggaaggagggagggagggagggagggggg
aaggagtcggagggagacaacgatgagggggagggagggggggagggtgt
gtatagaaggacgtgcatcccacaacttgggggtggcaccaatcgatggt
ttgccatccttgataagctgcggaaagaacgatcaccctcgcttcctccc
gcgctccctccctcctccttccttttgcttagatgaaggagggagggaga
gagggagggaggggggggagggagggtggcttagaccctgttttacgtgc
ggttgttttcccaatttctatgagatccaactgccccgtgacagggggac
atatccatgattgattgccccctctccctcccttcccccgtccctctccc
cctcctttcctgcctccctcccagctctagtctcttctctgggtcgctca
gtggcaggcgcaaagtgtcatctctcgtcgacttcacccctccctcccgc
tttcccccctcaccctcccttgcttgctctcagGCGTCGAAATGTTCAAA
AAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCTCCG
AACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCCCGG
GCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTGACG
CAGGAGGAAGgtaggctagggcccatgccctcttgcacttttggctgtat
ggctgtattgctgtactattgtatacaagtcttgaccaaaccgtttctcg
ccaacggcaggtccctgttcgtttccgggtatttctcttcctgcctttcc
tcttcttgtgcttacccttgttttcactcctttattttctcattcctccc
tccctgcctgcctgcctgcctgtgttccttcctccttgtgtcccagacgg
tcttcttcgtctccacatttctcatccatccatgcattcaccccctcccc
tccctcccctccttcccccgtccctgcagGAGGGCGACACACGCCCTTTC
TGGATAACTATCGACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGC
TCCATTACGTTGGGGGAGGGGAAAGAGATGGCAATGCCCGGGGACAACAC
CACGGTCAAGgtacgggggagggagggacggatggagggaggacacaaaa
gactttcagccttaagaaatggtagaatcgcataggtaggcttatgtttt
catcttttttccttccgccctccctccctccctcccttcctccctccctc
cctcagGTGTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATT
TGCTGTCCGGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGT
TAATCAAGTAAAGCGATTGGGAAAGAACAAAGTGATTAGATGGGAGGGGA
CAACGATTTTGCGAGGTGGTGGGAGGAGTGAGTATAGGAGGGGGCAGAAC
TAGGTTGGAATGTCGGTCCGGGTGCATGTGCAAAGAGCAGCGAACGTATT
TGCATGCGGCAGACACACGAAATCCAAAGCATCCACGGCGAAGAGTGACT
AATCACGACACGTCGGGGCTCTTTGAATCCCCCCTCCCTCGTCTATTCCG
AATAGCATGGCGAAGGAAGGCCTGCAGACACAAAGAAAGAAACACGAAAG
AACGAACACAAAAGACATTGGAGGGCAGCTCTGCATCTACCAATTGACTA
AGTGAACCATGCACATTCTGATCAACGACTTTC

protein sequence of NO04G00980.1

>NO04G00980.1-protein ID=NO04G00980.1-protein|Name=NO04G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MVLSIMASRQLVAISSSRQVACTLLKNSRNATKPRVSRALSTAFQRTKPH
LNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKIT
INTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGA
MPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYE
FPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKP
FLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGV
EMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAEL
YVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTV
KVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK*

Synonyms

Publications