NO04G00980, NO04G00980 (gene) Nannochloropsis oceanica

Overview
NameNO04G00980
Unique NameNO04G00980
Typegene
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length4233
Alignment locationchr4:315573..319805 -

Link to JBrowse

Properties
Property NameValue
DescriptionElongation factor Tu
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr4genomechr4:315573..319805 -
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
PRJNA7699582024-08-13
GSE1786722023-12-15
PRJNA9336932023-10-26
PRJNA9434492023-07-19
PXD0160542021-01-14
PXD0166992021-01-08
GSE1499042020-10-10
NoIMET1_WT_HS2020-09-29
PXD0100302020-03-16
GSE1396152020-03-11
PRJNA2413822020-03-11
BLASTP analysis of N. oceanica IMET1 genes2019-07-11
InterPro analysis for N. oceanica IMET1 genes2019-07-11
PXD0087212019-04-30
PRJNA1821802019-04-25
Gene prediction for N. oceanica IMET12017-10-24
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003924GTPase activity
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR009001Transl_elong_EF1A/Init_IF2_C
IPR027417P-loop_NTPase
IPR009000Transl_B-barrel
IPR004161Transl_elong_EFTu/EF1A_2
IPR004160Transl_elong_EFTu/EF1A_C
IPR000795TF_GTP-bd_dom
Homology
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_002293181.1 (translation factor elongation factor ef-tu [Thalassiosira pseudonana CCMP1335] >EED89642.1 translation factor elongation factor ef-tu [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 597.4 bits (1539), Expect = 3.500e-167
Identity = 298/427 (69.79%), Postives = 343/427 (80.33%), Query Frame = 0 
Query:   13 AISSSRQVACTLLKNSRNATKP------RVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKL 434
            AI++  Q    LL    NAT P      R   A    F R KPH+NIGTIGHVDHGKTTLT AITKVL+E G ++  SY+DID+APEE+ RKITINTSH+EYET  RHY H+DCPGHADYVKNMITGAAQMDGGILVV+ATDG MPQTREHILLAKQVG+P+LVVF+NKCDMV DEELLELVEME+RELLDFY+F GD+TPIIRGSALAA  G D  +G +A+L+LM AVDETIP P RDLDKPFLMP+EDVFSIAGRGTVVTGR+EQGK+  G+++E+VG      KTT TGVEMFKK LDYG AGDNVG LLR +KR+DV+RGQVL  PGS+ T K+FEAE+Y L+Q+EGGRHTPF  NYRPQF+ RT+DVTG + L EG EM MPGDNTT+ V LI P  +  GLRF +REGGRTV  G+V K+
Sbjct:    3 AITTLAQTTSRLLLRPTNATAPGLYLTRRTFAAAGDKFNRDKPHVNIGTIGHVDHGKTTLTQAITKVLSEKGWSKAMSYEDIDRAPEEKARKITINTSHIEYETANRHYGHIDCPGHADYVKNMITGAAQMDGGILVVAATDGPMPQTREHILLAKQVGMPKLVVFLNKCDMVDDEELLELVEMEIRELLDFYDFNGDETPIIRGSALAAAEGRDPELGANAVLELMAAVDETIPEPTRDLDKPFLMPIEDVFSIAGRGTVVTGRIEQGKVNVGDDLEVVGFN-HNAKTTCTGVEMFKKLLDYGMAGDNVGALLRGLKREDVERGQVLCKPGSISTAKKFEAEIYCLSQDEGGRHTPFFSNYRPQFFFRTADVTGDLKLREGTEMVMPGDNTTLDVELITPVPIEAGLRFNMREGGRTVGTGIVTKV 428
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_009036304.1 (hypothetical protein AURANDRAFT_60042 [Aureococcus anophagefferens] >EGB09195.1 hypothetical protein AURANDRAFT_60042 [Aureococcus anophagefferens])

HSP 1 Score: 596.3 bits (1536), Expect = 7.800e-167
Identity = 291/384 (75.78%), Postives = 336/384 (87.50%), Query Frame = 0 
Query:   51 LNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            +N+GTIGHVDHGKTTLTAAITKVL+E G AE  ++ DIDKAPEER R ITIN++HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDG ILVVSATDG MPQTREHILLA+QVGIP LVVFMNKCD V DEELLELVEME++ELLDFY+FPG+DTPIIRGSAL A+NG    +G+D I++LM+AVD  IP P RD+DKPFLMPVEDVFSIAGRGTVVTGRVE G IKTG+E+EI+GL+ APTKTT TGVEMFKK+LD G AGDNVG LLR V+RD+VQRGQ+LAAPG+V   K+FEAE+YVLT+EEGGRHTPF  NYRPQF+IRT+DVTG++ L +G EM MPGDN T+ + LI P  ++EGLRFA+REGG+TV AGVV+K++
Sbjct:    1 MNVGTIGHVDHGKTTLTAAITKVLSERGMAEATAFGDIDKAPEERARGITINSAHVEYETDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGIPHLVVFMNKCDAVDDEELLELVEMEIQELLDFYDFPGEDTPIIRGSALCALNGEKKELGEDKIVELMDAVDSYIPLPDRDVDKPFLMPVEDVFSIAGRGTVVTGRVESGVIKTGDEIEILGLSDAPTKTTCTGVEMFKKSLDRGEAGDNVGALLRGVRRDEVQRGQILAAPGTVPMTKKFEAEVYVLTKEEGGRHTPFFSNYRPQFFIRTADVTGTVDLPDGVEMVMPGDNATLNIELISPLAITEGLRFALREGGKTVGAGVVSKVV 384
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_012204439.1 (elongation factor Tu [Saprolegnia parasitica CBS 223.65] >KDO24762.1 elongation factor Tu [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 596.3 bits (1536), Expect = 7.800e-167
Identity = 289/402 (71.89%), Postives = 341/402 (84.83%), Query Frame = 0 
Query:   34 PRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            P   R ++T F RTKPHLN+GTIGHVDHGKTTLTAAIT+VL+E GG +F +++DIDKAPEER R ITI+TSHVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVF+NK DMV DEELLELVEME+RELLD Y+FPGDD PI+RGSALAAV G D  +G+DA+L+LM  VDE IP P RD +KPFL+PVEDVFSI+GRGTVV+GRVE G I TG+EVE+VG+   PTKTT TGVEMF+K+LD G AGDNVG LLR +KRDDV RGQVL  PGS+  + + EA +YVL +EEGGRHTPF  NYRPQF+ RT+D+TG+I L EG EM MPGDN T+++ LI+P  + EG++F++REGGRT+ AGVV+K+I+
Sbjct:   24 PSSVRGMAT-FDRTKPHLNVGTIGHVDHGKTTLTAAITRVLSEQGGGKFIAFEDIDKAPEERARGITISTSHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFLNKVDMVDDEELLELVEMEIRELLDVYDFPGDDIPIVRGSALAAVEGRDHNLGRDAVLELMNQVDEYIPDPTRDFEKPFLLPVEDVFSISGRGTVVSGRVETGVINTGDEVELVGIRDVPTKTTCTGVEMFRKSLDRGQAGDNVGVLLRGLKRDDVLRGQVLCKPGSISPHTKVEAGVYVLKKEEGGRHTPFFTNYRPQFFFRTADITGNIVLPEGTEMVMPGDNPTLRIELIHPVAIDEGMKFSIREGGRTIGAGVVSKIIE 424
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: OQR98079.1 (translation elongation factor Tu [Achlya hypogyna])

HSP 1 Score: 594.0 bits (1530), Expect = 3.900e-166
Identity = 287/402 (71.39%), Postives = 341/402 (84.83%), Query Frame = 0 
Query:   34 PRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            P   R ++T F R+KPHLN+GTIGHVDHGKTTLTAAIT+VL+E GG +F +++DIDKAPEER R ITI+TSHVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVF+NK DMV DEELLELVEME+RELLD Y+FPGDD PI+RGSALAAV G D  +G+DA+++LM  VDE IP P RD +KPFL+PVEDVFSI+GRGTVV+GRVE G I TG+EVE+VG+   PTKTT TGVEMF+K+LD G AGDNVG LLR +KRDDV RGQVL  PGS+  + + EA +YVL +EEGGRHTPF  NYRPQF+ RT+D+TG+I L EG EM MPGDN T+++ LI+P  + EG++F++REGGRT+ AGVV+K+I+
Sbjct:   10 PSSVRGMAT-FDRSKPHLNVGTIGHVDHGKTTLTAAITRVLSEQGGGKFIAFEDIDKAPEERARGITISTSHVEYETDKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFLNKVDMVDDEELLELVEMEIRELLDVYDFPGDDIPIVRGSALAAVEGRDHNLGRDAVIELMNQVDEYIPDPTRDFEKPFLLPVEDVFSISGRGTVVSGRVETGVINTGDEVELVGIRDVPTKTTCTGVEMFRKSLDRGQAGDNVGVLLRGLKRDDVLRGQVLCKPGSISPHTKVEAGVYVLKKEEGGRHTPFFSNYRPQFFFRTADITGNIILPEGTEMVMPGDNPTLRIELIHPVAIDEGMKFSIREGGRTIGAGVVSKIIE 410
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_022953519.1 (elongation factor Tu, mitochondrial [Cucurbita moschata])

HSP 1 Score: 594.0 bits (1530), Expect = 3.900e-166
Identity = 301/421 (71.50%), Postives = 343/421 (81.47%), Query Frame = 0 
Query:   15 SSSRQVACTLLKNSRNATKPRVSRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLT-AAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            +SS      LL  +  A+ P         F RTKPH+N+GTIGHVDHGKTTLTAAITKVLAE G A+  ++D+IDKAPEER+R ITI T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVS  DGAMPQT+EHILLA+QVG+P LV F+NK D V D ELL+LVEME+RELL FY+FPGDD PIIRGSAL+A+ GT++ IGK AILKLMEAVDE IP P R LDKPFLMP+EDVFSI GRGTV TGRVEQG IK GEEVE++GLT  AP KTTVTGVEMFKK LD G AGDNVG LLR +KR+D+QRGQV+A PGS+KTYK+FEAE+YVLT+EEGGRHT F+ NYRPQFY+RT+D+TG + L E  +M MPGDN T    LI P  L  G RFA+REGGRTV AGVV+K+I
Sbjct:   29 ASSHSSISDLLSRNDGASSPIPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEERKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGAMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLDLVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGKKAILKLMEAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEVLGLTQGAPMKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSLKTYKKFEAEIYVLTKEEGGRHTAFMSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTAAFELILPVPLEAGQRFALREGGRTVGAGVVSKVI 449
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: OQS07487.1 (translation elongation factor Tu [Thraustotheca clavata])

HSP 1 Score: 593.6 bits (1529), Expect = 5.000e-166
Identity = 284/392 (72.45%), Postives = 336/392 (85.71%), Query Frame = 0 
Query:   44 FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            F R+KPHLN+GTIGHVDHGKTTLTAAIT+VL+E GG +F +++DIDKAPEER R ITI+TSHVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVF+NK DMV DEELLELVEME+RELLD Y+FPGDD PI+RGSALAAV G D  +G+DA+++LM  VDE IP P RD +KPFL+PVEDVFSI+GRGTVV+GRVE G I TG+EVE+VG+   PTKTT TGVEMF+K+LD G AGDNVG LLR +KRDDV RGQVL  PGS+  + + EA +YVL +EEGGRHTPF  NYRPQF+ RT+D+TG+I L EG EM MPGDN T+++ LI+P  + EG++F++REGGRT+ AGVV+K+I+
Sbjct:    4 FDRSKPHLNVGTIGHVDHGKTTLTAAITRVLSEKGGGQFIAFEDIDKAPEERARGITISTSHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFLNKVDMVDDEELLELVEMEIRELLDVYDFPGDDIPIVRGSALAAVEGRDHNLGRDAVVELMNQVDEYIPDPARDFEKPFLLPVEDVFSISGRGTVVSGRVETGVINTGDEVELVGIRDVPTKTTCTGVEMFRKSLDRGQAGDNVGVLLRGLKRDDVLRGQVLCKPGSISPHTKVEAGVYVLKKEEGGRHTPFFTNYRPQFFFRTADITGNIVLPEGTEMVMPGDNPTLRIELIHPVAIDEGMKFSIREGGRTIGAGVVSKIIE 395
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: OSX71741.1 (hypothetical protein BU14_0505s0020 [Porphyra umbilicalis])

HSP 1 Score: 593.2 bits (1528), Expect = 6.600e-166
Identity = 294/392 (75.00%), Postives = 330/392 (84.18%), Query Frame = 0 
Query:   43 AFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            AF+RTK H NIG+IGHVDHGKTTLT+AITKVL+E GGA F  Y +IDKAPEE+ R ITI+T+HVEYET  RHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P +VVF+NK DMV D EL +LVEMEVR+LL FY+FPGDD PIIRGSAL A+ G D+ IG+DA+L LM AVDE IP P RDLD+PFLMPVEDVFSI GRGTVVTGRVE+G +K GE+VE++GL  AP KTTVTGVEMFKK+L  G AGDNVGCLLR +KRDDV RGQVL  P SVKTY +FEAE+Y LT+EEGGRH PF  NY+PQFYIRT DVTG+  L EGKEM MPGDN T  V L+ P  + EGLRFAVREGGRTVAAGVV+KL+
Sbjct:   85 AFERTKKHANIGSIGHVDHGKTTLTSAITKVLSETGGATFVDYGNIDKAPEEKARGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAVDGPMPQTREHILLARQVGVPHIVVFLNKVDMVDDSELTDLVEMEVRDLLTFYKFPGDDIPIIRGSALKAMKGEDNEIGRDAVLSLMAAVDEYIPNPTRDLDRPFLMPVEDVFSIPGRGTVVTGRVERGIVKPGEDVEVLGL-RAPIKTTVTGVEMFKKSLTSGEAGDNVGCLLRGLKRDDVTRGQVLCKPASVKTYTKFEAEVYCLTKEEGGRHKPFFSNYQPQFYIRTGDVTGTFNLPEGKEMVMPGDNVTASVELLTPIAMDEGLRFAVREGGRTVAAGVVSKLV 475
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_008611190.1 (elongation factor Tu [Saprolegnia diclina VS20] >EQC35440.1 elongation factor Tu [Saprolegnia diclina VS20])

HSP 1 Score: 592.8 bits (1527), Expect = 8.600e-166
Identity = 293/430 (68.14%), Postives = 352/430 (81.86%), Query Frame = 0 
Query:   13 AISSSRQVACTL-LKNSRNATKPRVSRALSTA------FQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK 436
            A+ +   VA TL   NS      +++R + ++      F RTKPHLN+GTIGHVDHGKTTLTAAIT+VL+E GG +F +++DIDKAPEER R ITI+TSHVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDG MPQTREHILLA+QVG+P LVVF+NK DMV DEELLELVEME+RELLD Y+FPGDD PI+RGSALAAV G D  +G+DA+++LM  VDE IP P RD +KPFL+PVEDVFSI+GRGTVV+GRVE G I TG+EVE+VG+   PTKTT TGVEMF+K+LD G AGDNVG LLR +KRDDV RGQVL  PGS+  + + EA +YVL +EEGGRHTPF  NYRPQF+ RT+D+TG+I L EG EM MPGDN T+++ LI+P  + EG++F++REGGRT+ AGVV+K+I+
Sbjct:   19 AVYTGAAVAATLRFSNSLELMLRQLARRIPSSVRGMATFDRTKPHLNVGTIGHVDHGKTTLTAAITRVLSEQGGGKFIAFEDIDKAPEERARGITISTSHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMPQTREHILLARQVGVPALVVFLNKVDMVDDEELLELVEMEIRELLDVYDFPGDDIPIVRGSALAAVEGRDHNLGRDAVIELMNQVDEYIPDPTRDFEKPFLLPVEDVFSISGRGTVVSGRVETGVINTGDEVELVGIRDVPTKTTCTGVEMFRKSLDRGQAGDNVGVLLRGLKRDDVLRGQVLCKPGSISPHTKVEAGVYVLKKEEGGRHTPFFTNYRPQFFFRTADITGNIMLPEGTEMVMPGDNPTLRIELIHPVAIDEGMKFSIREGGRTIGAGVVSKIIE 448
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_005719137.1 (Translation elongation factor EF-Tu, mitochondrial [Chondrus crispus] >CDF39226.1 Translation elongation factor EF-Tu, mitochondrial [Chondrus crispus])

HSP 1 Score: 592.0 bits (1525), Expect = 1.500e-165
Identity = 292/407 (71.74%), Postives = 337/407 (82.80%), Query Frame = 0 
Query:   29 RNATKPRV-SRALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            R  + P V +R+ + AFQRTKPHLN+GTIGHVDHGKTTLTAAITKVL+EAGGA F  YD IDKAPEE++R ITI+T+HVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDG ILVVSA DG MPQTREHILLA+QVG+P +VVF+NKCD+V DEEL+ELVEMEVR+LL FY+FPGDDTPI+RGSAL A+ G    IG+DA+LKLM  VDE IP P RDLDKPFLM VEDVFSI GRGTVVTGRVEQG IK G++VE+VGL     K   TGVEMFKK+LD G AGDN+GCLLR +KR+DV RGQVL APGS+K++ +FEAE+Y LT+EEGGRH PF  NY PQFY RT+DVTG + L +  +M MPGDN T K  ++    + EGLRFAVREGGRT+ AGVV K++
Sbjct:   16 RATSAPSVPARSFADAFQRTKPHLNVGTIGHVDHGKTTLTAAITKVLSEAGGATFTDYDQIDKAPEEKKRGITISTAHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPHIVVFLNKCDVVDDEELIELVEMEVRDLLSFYKFPGDDTPIVRGSALEALQGNKVEIGRDAVLKLMGEVDEYIPEPKRDLDKPFLMSVEDVFSIQGRGTVVTGRVEQGTIKAGQDVEVVGLRDT-IKVACTGVEMFKKSLDVGQAGDNLGCLLRGIKREDVTRGQVLCAPGSIKSHNKFEAEIYCLTKEEGGRHKPFFTNYAPQFYFRTADVTGKVILPDDVQMVMPGDNVTCKAEMLSKIAMVEGLRFAVREGGRTIGAGVVTKVM 421
[Close]
BLAST of NO04G00980 vs. NCBI_GenBank
Match: XP_002524809.1 (PREDICTED: elongation factor Tu, mitochondrial [Ricinus communis] >EEF37652.1 elongation factor tu, putative [Ricinus communis])

HSP 1 Score: 592.0 bits (1525), Expect = 1.500e-165
Identity = 296/398 (74.37%), Postives = 338/398 (84.92%), Query Frame = 0 
Query:   38 RALSTAFQRTKPHLNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKITINTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGAMPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYEFPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKPFLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGL-TAAPTKTTVTGVEMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAELYVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTVKVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLI 435
            R+++T F RTKPH+N+GTIGHVDHGKTTLTAAITKVLAE G A+  ++D+IDKAPEE++R ITI T+HVEYET KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSA DG MPQT+EHILLA+QVG+P LV F+NKCD V D ELLELVEME+RELL FY+FPGD+ PIIRGSAL+A+ GT++ +GK AILKLM+AVDE IP P R LDKPFLMP+EDVFSI GRGTV TGRVEQG IK GEEVEI+GL   AP KTTVTGVEMFKK LD G AGDNVG LLR +KR+DVQRGQV+A PGSVKTYK+FEAE+YVLT++EGGRHT F  NYRPQFY+RT+D+TG + L E  +M MPGDN T    LI P  L  G RFA+REGGRTV AGVV+K+I
Sbjct:   52 RSMAT-FTRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKCDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEELGKKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGTIKVGEEVEILGLMQGAPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDVQRGQVIAKPGSVKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYMRTADITGKVELPENVKMVMPGDNVTATFELILPVPLEAGQRFALREGGRTVGAGVVSKVI 448
The following BLAST results are available for this feature:
BLAST of NO04G00980 vs. NCBI_GenBank
Analysis Date: 2019-07-11 (BLASTP analysis of N. oceanica IMET1 genes)
Total hits: 20
Match NameE-valueIdentityDescription
XP_002293181.13.500e-16769.79translation factor elongation factor ef-tu [Thalas... [more]
XP_009036304.17.800e-16775.78hypothetical protein AURANDRAFT_60042 [Aureococcus... [more]
XP_012204439.17.800e-16771.89elongation factor Tu [Saprolegnia parasitica CBS 2... [more]
OQR98079.13.900e-16671.39translation elongation factor Tu [Achlya hypogyna][more]
XP_022953519.13.900e-16671.50elongation factor Tu, mitochondrial [Cucurbita mos... [more]
OQS07487.15.000e-16672.45translation elongation factor Tu [Thraustotheca cl... [more]
OSX71741.16.600e-16675.00hypothetical protein BU14_0505s0020 [Porphyra umbi... [more]
XP_008611190.18.600e-16668.14elongation factor Tu [Saprolegnia diclina VS20] >E... [more]
XP_005719137.11.500e-16571.74Translation elongation factor EF-Tu, mitochondrial... [more]
XP_002524809.11.500e-16574.37PREDICTED: elongation factor Tu, mitochondrial [Ri... [more]

Pages

back to top
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
nonsL074nonsL074Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ncniR059ncniR059Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region
ngnoR105ngnoR105Nannochloropsis oceanica (N. oceanica IMET1)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NSK005004NSK005004Nannochloropsis salina (N. salina CCMP1776)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
NO04G00980.1NO04G00980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following gene feature(s) are orthologous to this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|287513gene_1877Nannochloropsis oceanica (N. oceanica CCMP1779)gene
Naga_101021g1gene2126Nannochloropsis gaditana (N. gaditana B-31)gene


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
NO04G00980.1NO04G00980.1Nannochloropsis oceanica (N. oceanica IMET1)mRNA


Sequences
The following sequences are available for this feature:

gene sequence

>NO04G00980 ID=NO04G00980|Name=NO04G00980|organism=Nannochloropsis oceanica|type=gene|length=4233bp
CGCCGGTGTTGTCATCGGTCGCTTACCAAGAACGAGCGTGCGGCAGCAAG
CAGGAATAGGAACTGTGTTGTGCACACAAACCACGCCAGCACGTTAGCAA
ACCTTCCGGAGATATTAAAAAACACCTTCCTAGGCCTGATTAGCGTGCGG
AATGGCTTTACCATCGCACAACATCTCTCTCTCTCTCTGTTGCTTCGTGT
TAGCCTCCCCACCCCCCAACCCACCCACCTCAGCAAGCAAGCAACAGATA
CTCGCCACTCGGCGCATGCCCCGTTCTGTCTAAGTGTCCCTCTCACCTCT
GCCTACGCTCATGTAGACACAGGAAGAAGGATGGTGCTCTCTATCATGGC
GTCCCGCCAACTGGTGGCCATTAGCAGCAGTAGGCAAGTCGCCTGTACCC
TGCTCAAGAACAGCAGGAACGgtacgtttttattacgcgacgcgtgaagg
gaaaacgtttcgcaaaggcaaaacagggggaagcttggacatgtaccaag
acggtggagctgcactctttaagaaaaagttcttaacgcggtggtgtcca
tctcgctcgcccgtccctcctttcccccccccccccccccccctcgcatc
aacgcagCCACCAAACCGCGAGTAAGCCGTGCCCTGTCCACGGCCTTCCA
ACGCACAAAGCCCCACTTGAATATTGGCACCATCGGACACGTCGACCACG
GCAAGACCACGCTTACAGCCGCTATCACCAAGgtagggaaggagggagga
aacgcggggggacgggtcaaacggtcgtccccgacagaggtacataccca
caacagagactcatccattcattctttcgtttctgccgtctcccgacagG
TGCTAGCTGAGGCGGGTGGCGCAGAGTTCCGCTCATACGACGATATTGAC
AAGGCCCCGGAAGAGCGACAGCGgtacgtgctactgcttgcttgtccctc
cctccgttccttccttcctccctccctccctcccgtcctccgactcaccc
atcttttattgatgtgctccacagCAAGATCACCATCAACACCTCGCATG
TGGAGTATGAGACACCCAAGCGGCATTATGCTCACGTGGACTGCCCGGGC
CATGCTGACTACGTCAAGAATATGATCACGGGCGCGGCCCAGATGGACGg
tacgtcgccctccctcccttcctctctctctccctccctccctctctccc
tcccgccctctttatttctcgcgttcccgtagccatggctattctatgac
atgaaaattgagcggcacgtcgctttatcccccttccctccctttctcac
cttcacccttcctccctccctccctccctcccttcccccagGCGGCATCC
TGGTGGTGTCGGCCACCGACGGGGCCATGCCCCAGACGCGCGAACACATT
CTTCTCGCTAAGCAAGTGGGCATACCCCGCCTGGTCGTCTTCATGAACAA
ATGCGACATGGTCAAGGACGAGGAGCTCTTGGAGCTGGTGGAGATGGAAG
gtgagggagggagggagggagggagggggggggggggggggaagggttac
acacatcagtattaagtgcttgaaagatgcgatatttatataaattaagt
aatgagtaccttagtgcacgattcgccgctccagtggtgcagtatatgca
tagatagaacaaatatgtacgtgtgtagctcccatcgctgtcaaaggatc
agaaagggtgtattactgacgagtgggggcagtagatgtctcatcctccc
tcctccctccctgacttcctccttgtctccctccagTGCGTGAGCTCCTC
GACTTCTACGAGTTCCCGGGTGATGACACCCCCATCATCCGGGGCTCGGC
CTTGGCAGCTGTCAATGGGACAGACGATGCGATCGGgtaggtaccctgtc
cctccctcccttcgtcttttacgtctccacctgagtacccacgcacaatt
tgtcccgtccacaatatccccccctcccttccttcctccctcccttcctc
agAAAGGACGCCATCCTGAAGCTGATGGAGGCCGTGGACGAGACCATTCC
TACCCCTCCCCGTGACTTGGACAAGCCGTTTTTGATGCCCGTGGAGGACG
TTTTTTCGATCGCGGGGCGAGGAACAGTGGTGACGGGAAGGGTGGAGCAG
gtgagggagggagggaaggagggagggagggagggggggacctgtgacgg
gaaggatggagcaggtgacgagggaaggagggaaggagggaaggagggag
ggagggcgggtaggcagttatgtcttagacgacagtgagttgacattctg
tttctcaccactttcctcgttccatccctccctccttccctcccttcttc
cctccctccttcaacagGGCAAGATCAAGACAGGGGAGGAGGTGGAAATC
GTCGGTCTAACGGCTGCGCCCACCAAGACGACCGTTACAGgtaggggagg
agggaggagggacggagaaagggaaggagggagggagggagggagggggg
aaggagtcggagggagacaacgatgagggggagggagggggggagggtgt
gtatagaaggacgtgcatcccacaacttgggggtggcaccaatcgatggt
ttgccatccttgataagctgcggaaagaacgatcaccctcgcttcctccc
gcgctccctccctcctccttccttttgcttagatgaaggagggagggaga
gagggagggaggggggggagggagggtggcttagaccctgttttacgtgc
ggttgttttcccaatttctatgagatccaactgccccgtgacagggggac
atatccatgattgattgccccctctccctcccttcccccgtccctctccc
cctcctttcctgcctccctcccagctctagtctcttctctgggtcgctca
gtggcaggcgcaaagtgtcatctctcgtcgacttcacccctccctcccgc
tttcccccctcaccctcccttgcttgctctcagGCGTCGAAATGTTCAAA
AAGACGTTAGACTACGGCGGGGCCGGGGACAACGTCGGCTGCCTCCTCCG
AACCGTCAAGAGGGATGACGTCCAACGAGGGCAGGTGCTGGCGGCCCCGG
GCTCAGTGAAGACCTACAAGGAGTTCGAGGCGGAGTTGTATGTCCTGACG
CAGGAGGAAGgtaggctagggcccatgccctcttgcacttttggctgtat
ggctgtattgctgtactattgtatacaagtcttgaccaaaccgtttctcg
ccaacggcaggtccctgttcgtttccgggtatttctcttcctgcctttcc
tcttcttgtgcttacccttgttttcactcctttattttctcattcctccc
tccctgcctgcctgcctgcctgtgttccttcctccttgtgtcccagacgg
tcttcttcgtctccacatttctcatccatccatgcattcaccccctcccc
tccctcccctccttcccccgtccctgcagGAGGGCGACACACGCCCTTTC
TGGATAACTATCGACCGCAGTTCTACATCCGGACGTCGGACGTAACGGGC
TCCATTACGTTGGGGGAGGGGAAAGAGATGGCAATGCCCGGGGACAACAC
CACGGTCAAGgtacgggggagggagggacggatggagggaggacacaaaa
gactttcagccttaagaaatggtagaatcgcataggtaggcttatgtttt
catcttttttccttccgccctccctccctccctcccttcctccctccctc
cctcagGTGTCGCTCATCTACCCCACAGTGTTGAGCGAGGGGCTCCGATT
TGCTGTCCGGGAAGGAGGCCGCACAGTCGCCGCAGGAGTAGTGGCCAAGT
TAATCAAGTAAAGCGATTGGGAAAGAACAAAGTGATTAGATGGGAGGGGA
CAACGATTTTGCGAGGTGGTGGGAGGAGTGAGTATAGGAGGGGGCAGAAC
TAGGTTGGAATGTCGGTCCGGGTGCATGTGCAAAGAGCAGCGAACGTATT
TGCATGCGGCAGACACACGAAATCCAAAGCATCCACGGCGAAGAGTGACT
AATCACGACACGTCGGGGCTCTTTGAATCCCCCCTCCCTCGTCTATTCCG
AATAGCATGGCGAAGGAAGGCCTGCAGACACAAAGAAAGAAACACGAAAG
AACGAACACAAAAGACATTGGAGGGCAGCTCTGCATCTACCAATTGACTA
AGTGAACCATGCACATTCTGATCAACGACTTTC
back to top

protein sequence of NO04G00980.1

>NO04G00980.1-protein ID=NO04G00980.1-protein|Name=NO04G00980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=436bp
MVLSIMASRQLVAISSSRQVACTLLKNSRNATKPRVSRALSTAFQRTKPH
LNIGTIGHVDHGKTTLTAAITKVLAEAGGAEFRSYDDIDKAPEERQRKIT
INTSHVEYETPKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGA
MPQTREHILLAKQVGIPRLVVFMNKCDMVKDEELLELVEMEVRELLDFYE
FPGDDTPIIRGSALAAVNGTDDAIGKDAILKLMEAVDETIPTPPRDLDKP
FLMPVEDVFSIAGRGTVVTGRVEQGKIKTGEEVEIVGLTAAPTKTTVTGV
EMFKKTLDYGGAGDNVGCLLRTVKRDDVQRGQVLAAPGSVKTYKEFEAEL
YVLTQEEGGRHTPFLDNYRPQFYIRTSDVTGSITLGEGKEMAMPGDNTTV
KVSLIYPTVLSEGLRFAVREGGRTVAAGVVAKLIK*
back to top
Synonyms
Publications